Wall clock time and date at job start Tue Mar 9 2021 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 5 5 C 1.53002 * 109.47253 * 202.87213 * 3 2 1 6 6 C 1.52996 * 109.46972 * 59.99852 * 5 3 2 7 7 C 1.53001 * 109.47486 * 60.00463 * 6 5 3 8 8 H 1.08996 * 109.46778 * 59.99584 * 7 6 5 9 9 N 1.46496 * 109.47308 * 180.02562 * 7 6 5 10 10 C 1.34781 * 119.99775 * 205.00143 * 9 7 6 11 11 O 1.21281 * 120.00039 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00051 * 180.02562 * 10 9 7 13 13 O 1.42901 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.35993 * 116.99849 * 179.97438 * 13 12 10 15 15 C 1.39162 * 120.07129 * 179.97438 * 14 13 12 16 16 O 1.35996 * 120.06978 * 0.02562 * 15 14 13 17 17 C 1.42901 * 116.99548 * 180.02562 * 16 15 14 18 18 C 1.38556 * 119.85444 * 180.02562 * 15 14 13 19 19 C 1.38242 * 119.99963 * 0.02562 * 18 15 14 20 20 C 1.50701 * 119.92932 * 180.02562 * 19 18 15 21 21 O 1.42899 * 109.47129 * 64.99204 * 20 19 18 22 22 Si 1.86299 * 109.47384 * 184.99902 * 20 19 18 23 23 C 1.38253 * 120.14880 * 359.97438 * 19 18 15 24 24 C 1.38247 * 120.14173 * 359.77210 * 23 19 18 25 25 C 1.53002 * 109.46637 * 299.99742 * 7 6 5 26 26 C 1.52997 * 109.47306 * 322.87033 * 3 2 1 27 27 H 4.18743 * 15.03955 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.47407 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.46986 * 300.00110 * 5 3 2 30 30 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 31 31 H 1.09004 * 109.47298 * 300.00176 * 6 5 3 32 32 H 0.96996 * 120.00066 * 24.99270 * 9 7 6 33 33 H 1.09001 * 109.46822 * 299.99474 * 12 10 9 34 34 H 1.09000 * 109.47296 * 59.99069 * 12 10 9 35 35 H 1.08996 * 109.46681 * 299.99681 * 17 16 15 36 36 H 1.08993 * 109.47335 * 60.00007 * 17 16 15 37 37 H 1.09000 * 109.46986 * 180.02562 * 17 16 15 38 38 H 1.07998 * 120.00328 * 179.97438 * 18 15 14 39 39 H 1.09005 * 109.46897 * 304.99655 * 20 19 18 40 40 H 0.96705 * 113.99730 * 60.01062 * 21 20 19 41 41 H 1.48506 * 109.99793 * 179.97438 * 22 20 19 42 42 H 1.48499 * 109.99732 * 301.31299 * 22 20 19 43 43 H 1.07995 * 119.92877 * 180.02562 * 23 19 18 44 44 H 1.08001 * 119.99358 * 180.27863 * 24 23 19 45 45 H 1.09000 * 109.46986 * 179.97438 * 25 7 6 46 46 H 1.08993 * 109.47662 * 299.99908 * 25 7 6 47 47 H 1.08998 * 109.47533 * 59.99773 * 26 3 2 48 48 H 1.08996 * 109.47853 * 180.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 -0.1267 -1.0197 5 6 3.1554 1.3300 0.5607 6 6 2.6453 1.5087 1.9920 7 6 3.1558 0.3589 2.8628 8 1 4.2458 0.3595 2.8627 9 7 2.6669 0.5298 4.2331 10 6 3.3438 -0.0157 5.2630 11 8 4.3574 -0.6485 5.0553 12 6 2.8406 0.1595 6.6726 13 8 3.7222 -0.5057 7.5794 14 6 3.4099 -0.4438 8.9015 15 6 4.2243 -1.0696 9.8405 16 8 5.3345 -1.7441 9.4379 17 6 6.1229 -2.3624 10.4568 18 6 3.9015 -1.0041 11.1863 19 6 2.7723 -0.3185 11.5937 20 6 2.4231 -0.2478 13.0580 21 8 3.4329 0.4860 13.7536 22 14 0.7808 0.6072 13.2642 23 6 1.9632 0.3033 10.6609 24 6 2.2824 0.2461 9.3170 25 6 2.6464 -0.9704 2.3021 26 6 3.1565 -1.1491 0.8707 27 1 -1.0500 0.0005 -0.0001 28 1 4.2454 1.3307 0.5603 29 1 2.7917 2.1492 -0.0596 30 1 3.0079 2.4560 2.3912 31 1 1.5553 1.5082 1.9920 32 1 1.8561 1.0356 4.3992 33 1 2.8027 1.2214 6.9155 34 1 1.8417 -0.2685 6.7577 35 1 6.4782 -1.6023 11.1526 36 1 5.5160 -3.0913 10.9937 37 1 6.9763 -2.8646 10.0012 38 1 4.5316 -1.4893 11.9170 39 1 2.3612 -1.2567 13.4659 40 1 3.5433 1.3950 13.4425 41 1 0.4248 0.6828 14.7040 42 1 0.8426 1.9726 12.6835 43 1 1.0821 0.8382 10.9832 44 1 1.6511 0.7365 8.5908 45 1 3.0104 -1.7896 2.9222 46 1 1.5565 -0.9709 2.3020 47 1 2.7936 -2.0962 0.4714 48 1 4.2465 -1.1485 0.8711 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17761044_60476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:30 Heat of formation + Delta-G solvation = -58.222680 kcal Electronic energy + Delta-G solvation = -29794.395720 eV Core-core repulsion = 25590.324280 eV Total energy + Delta-G solvation = -4204.071440 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.166 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84829 -41.17915 -39.87773 -39.12561 -38.87542 -37.03292 -35.79970 -33.23966 -32.09013 -31.84748 -31.50325 -30.81367 -28.94438 -28.39875 -26.21317 -24.26342 -23.74963 -23.35434 -22.53558 -21.70709 -21.49370 -19.81479 -18.74823 -18.50236 -18.15639 -17.87480 -17.51795 -17.32668 -17.09438 -16.67865 -16.36850 -16.13741 -15.85065 -15.81245 -15.66126 -15.40925 -15.31350 -15.08984 -14.71540 -14.34209 -14.01371 -13.82536 -13.77881 -13.53717 -13.44707 -13.22495 -12.91119 -12.64538 -12.59012 -12.29175 -12.21157 -12.18061 -12.14238 -12.00649 -11.77023 -11.63012 -11.51035 -11.07768 -10.93414 -10.79172 -10.61382 -10.15246 -9.79752 -8.93111 -4.88425 0.15858 0.26979 1.33114 1.44930 1.48254 1.63045 1.95841 1.98540 1.99162 2.30267 2.54477 2.56508 3.40636 3.43008 3.50550 3.65217 3.70964 3.76959 3.84991 3.89905 4.01441 4.03440 4.08941 4.11082 4.13699 4.21071 4.27316 4.30221 4.35268 4.44018 4.47043 4.50607 4.56696 4.63437 4.64707 4.65676 4.85693 5.00005 5.03592 5.04960 5.11665 5.11859 5.14420 5.16415 5.29565 5.36152 5.37511 5.45616 5.58707 5.95918 6.41178 6.49103 6.53589 6.77262 7.13759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.194 4.194 3 C 0.016 3.984 4 H 0.103 0.897 5 C -0.107 4.107 6 C -0.118 4.118 7 C 0.149 3.851 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.512 3.488 11 O -0.571 6.571 12 C 0.035 3.965 13 O -0.314 6.314 14 C 0.085 3.915 15 C 0.076 3.924 16 O -0.335 6.335 17 C 0.020 3.980 18 C -0.151 4.151 19 C -0.115 4.115 20 C -0.085 4.085 21 O -0.550 6.550 22 Si 0.776 3.224 23 C -0.111 4.111 24 C -0.160 4.160 25 C -0.125 4.125 26 C -0.108 4.108 27 H 0.235 0.765 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.419 0.581 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.386 0.614 41 H -0.307 1.307 42 H -0.273 1.273 43 H 0.158 0.842 44 H 0.174 0.826 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 3.545 -1.704 7.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.194 4.194 3 C -0.002 4.002 4 H 0.121 0.879 5 C -0.145 4.145 6 C -0.156 4.156 7 C 0.045 3.955 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.298 3.702 11 O -0.449 6.449 12 C -0.043 4.043 13 O -0.228 6.228 14 C 0.040 3.960 15 C 0.031 3.969 16 O -0.249 6.249 17 C -0.074 4.074 18 C -0.170 4.170 19 C -0.116 4.116 20 C -0.193 4.193 21 O -0.359 6.359 22 Si 0.681 3.319 23 C -0.129 4.129 24 C -0.179 4.179 25 C -0.163 4.163 26 C -0.146 4.146 27 H 0.251 0.749 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.257 0.743 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.235 0.765 41 H -0.236 1.236 42 H -0.200 1.200 43 H 0.175 0.825 44 H 0.192 0.808 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.253 3.080 -1.482 7.127 hybrid contribution 0.741 0.547 0.416 1.011 sum -5.512 3.627 -1.066 6.684 Atomic orbital electron populations 1.25557 0.96768 1.00185 1.00963 1.23307 0.94815 1.00902 1.00392 1.18463 0.84488 0.96286 1.00929 0.87948 1.21526 1.01659 0.96052 0.95260 1.21761 1.01824 0.97283 0.94752 1.20974 0.99055 0.95442 0.80032 0.91142 1.45777 1.29495 1.55286 1.05516 1.20565 0.83567 0.78653 0.87381 1.90767 1.26646 1.41462 1.85988 1.22769 0.94935 1.00886 0.85697 1.86223 1.50636 1.72201 1.13690 1.18599 0.95574 0.99629 0.82219 1.18675 0.89017 0.97184 0.92029 1.86193 1.35402 1.66211 1.37085 1.23283 0.95154 0.97478 0.91491 1.21020 0.99902 1.03418 0.92638 1.20115 0.95642 0.99396 0.96440 1.25310 1.02211 1.02944 0.88847 1.86573 1.57398 1.29835 1.62045 0.93955 0.78434 0.80632 0.78861 1.21041 0.99942 0.99857 0.92025 1.21367 0.96401 1.01945 0.98145 1.21855 1.01163 0.96979 0.96325 1.21511 1.01346 0.97962 0.93765 0.74888 0.89853 0.90133 0.89948 0.90612 0.74312 0.85633 0.85528 0.91946 0.91540 0.87116 0.84050 0.86035 0.76451 1.23557 1.19960 0.82533 0.80836 0.93624 0.91333 0.91428 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 0.14 19.25 74.32 1.43 1.57 16 2 C -0.19 -0.11 10.06 31.12 0.31 0.21 16 3 C 0.02 -0.03 3.07 -12.60 -0.04 -0.07 16 4 H 0.10 -0.37 8.14 -2.39 -0.02 -0.38 16 5 C -0.11 0.46 5.43 30.59 0.17 0.63 16 6 C -0.12 0.55 5.17 30.59 0.16 0.70 16 7 C 0.15 -0.04 2.45 44.99 0.11 0.07 16 8 H 0.07 0.32 7.58 -2.39 -0.02 0.30 16 9 N -0.71 1.78 5.08 -442.54 -2.25 -0.47 16 10 C 0.51 2.34 7.87 87.66 0.69 3.03 16 11 O -0.57 -9.47 16.16 16.01 0.26 -9.22 16 12 C 0.03 -0.05 5.22 71.23 0.37 0.32 16 13 O -0.31 -2.87 9.45 -67.05 -0.63 -3.51 16 14 C 0.09 0.51 6.70 22.57 0.15 0.66 16 15 C 0.08 0.64 6.70 22.57 0.15 0.79 16 16 O -0.33 -3.83 10.28 -79.64 -0.82 -4.65 16 17 C 0.02 0.06 9.81 113.37 1.11 1.17 16 18 C -0.15 -0.59 8.67 22.35 0.19 -0.40 16 19 C -0.12 -0.02 5.35 -19.86 -0.11 -0.13 16 20 C -0.09 0.11 2.80 71.24 0.20 0.31 16 21 O -0.55 -1.20 12.83 -148.98 -1.91 -3.11 16 22 Si 0.78 -3.05 29.88 68.60 2.05 -1.00 16 23 C -0.11 0.32 8.66 22.28 0.19 0.52 16 24 C -0.16 0.34 9.04 22.35 0.20 0.54 16 25 C -0.12 -0.19 5.27 30.60 0.16 -0.03 16 26 C -0.11 0.03 5.43 30.60 0.17 0.20 16 27 H 0.23 -1.49 7.80 -4.42 -0.03 -1.53 16 28 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.08 -0.37 7.23 -2.38 -0.02 -0.39 16 32 H 0.42 -4.24 8.60 -92.71 -0.80 -5.03 16 33 H 0.13 -1.07 7.65 -2.39 -0.02 -1.09 16 34 H 0.13 -1.08 7.68 -2.39 -0.02 -1.10 16 35 H 0.06 0.05 7.66 -2.39 -0.02 0.03 16 36 H 0.07 0.00 7.66 -2.39 -0.02 -0.02 16 37 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.14 0.34 6.30 -2.91 -0.02 0.32 16 39 H 0.12 -0.30 7.96 -2.38 -0.02 -0.31 16 40 H 0.39 -1.34 8.70 -74.05 -0.64 -1.98 16 41 H -0.31 -1.37 7.11 99.48 0.71 -0.67 16 42 H -0.27 0.42 7.00 99.48 0.70 1.12 16 43 H 0.16 -1.29 4.83 -2.91 -0.01 -1.30 16 44 H 0.17 -1.76 6.30 -2.91 -0.02 -1.78 16 45 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.07 0.08 7.23 -2.39 -0.02 0.06 16 47 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 48 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -28.74 393.06 1.90 -26.84 By element: Atomic # 1 Polarization: -14.53 SS G_CDS: -0.42 Total: -14.95 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.63 Total: 10.08 kcal Atomic # 7 Polarization: 1.78 SS G_CDS: -2.25 Total: -0.47 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -3.11 Total: -20.49 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -1.00 kcal Total: -28.74 1.90 -26.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17761044_60476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.387 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds