Wall clock time and date at job start Tue Mar 9 2021 13:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42101 * 108.57792 * 2 1 4 4 O 1.42099 * 108.57912 * 228.97075 * 2 1 3 5 5 C 1.81400 * 101.92193 * 114.48223 * 2 1 3 6 6 H 1.09003 * 112.84652 * 53.80362 * 5 2 1 7 7 C 1.53778 * 113.61646 * 185.00218 * 5 2 1 8 8 C 1.53782 * 87.08123 * 139.98469 * 7 5 2 9 9 H 1.09004 * 113.60984 * 219.93214 * 8 7 5 10 10 C 1.52998 * 113.61665 * 89.11817 * 8 7 5 11 11 N 1.46496 * 109.46846 * 174.99674 * 10 8 7 12 12 C 1.34777 * 119.99613 * 179.97438 * 11 10 8 13 13 O 1.21691 * 120.00306 * 0.02562 * 12 11 10 14 14 C 1.46686 * 119.99903 * 180.02562 * 12 11 10 15 15 C 1.37867 * 126.23342 * 179.71746 * 14 12 11 16 16 C 1.39838 * 107.08639 * 179.90735 * 15 14 12 17 17 C 1.50694 * 126.06768 * 180.13614 * 16 15 14 18 18 O 1.42902 * 109.47305 * 300.28590 * 17 16 15 19 19 Si 1.86303 * 109.47205 * 180.28688 * 17 16 15 20 20 C 1.35451 * 107.86269 * 0.36032 * 16 15 14 21 21 N 1.35536 * 108.87031 * 359.77737 * 20 16 15 22 22 C 1.53777 * 87.08021 * 334.56399 * 8 7 5 23 23 H 1.08997 * 109.47711 * 305.51645 * 1 2 3 24 24 H 1.09004 * 109.47278 * 65.51829 * 1 2 3 25 25 H 1.09003 * 109.47076 * 185.51293 * 1 2 3 26 26 H 1.09003 * 113.61560 * 25.43092 * 7 5 2 27 27 H 1.09011 * 113.61151 * 254.53319 * 7 5 2 28 28 H 1.09002 * 109.47106 * 54.99725 * 10 8 7 29 29 H 1.08999 * 109.46731 * 294.99613 * 10 8 7 30 30 H 0.96996 * 120.00516 * 0.02562 * 11 10 8 31 31 H 1.08007 * 126.45911 * 0.03308 * 15 14 12 32 32 H 1.08999 * 109.47211 * 60.28789 * 17 16 15 33 33 H 0.96700 * 113.99835 * 300.00390 * 18 17 16 34 34 H 1.48499 * 110.00319 * 179.97438 * 19 17 16 35 35 H 1.48499 * 109.99767 * 301.32126 * 19 17 16 36 36 H 1.07999 * 125.56154 * 179.75652 * 20 16 15 37 37 H 0.96998 * 125.67653 * 180.02562 * 21 20 16 38 38 H 1.09003 * 113.61309 * 139.98350 * 22 8 7 39 39 H 1.08996 * 113.61943 * 270.88534 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.6957 -1.6957 1.7677 7 6 3.6893 -0.7533 1.9509 8 6 3.2919 -0.3791 3.3886 9 1 3.9585 0.3496 3.8500 10 6 3.0230 -1.5894 4.2850 11 7 2.7709 -1.1360 5.6550 12 6 2.5079 -2.0345 6.6245 13 8 2.4802 -3.2224 6.3620 14 6 2.2549 -1.5805 7.9962 15 6 1.9691 -2.3826 9.0804 16 6 1.8033 -1.5390 10.1833 17 6 1.4812 -1.9714 11.5905 18 8 0.2367 -2.6738 11.5999 19 14 1.3556 -0.4710 12.6878 20 6 1.9787 -0.2640 9.7612 21 7 2.2537 -0.2755 8.4340 22 6 2.0176 0.2405 2.7913 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 4.2603 0.0218 1.4397 27 1 4.1439 -1.7405 1.8664 28 1 3.8906 -2.2492 4.2745 29 1 2.1515 -2.1292 3.9147 30 1 2.7926 -0.1891 5.8642 31 1 1.8903 -3.4598 9.0788 32 1 2.2708 -2.6261 11.9592 33 1 -0.5125 -2.1508 11.2835 34 1 1.0376 -0.8838 14.0783 35 1 2.6331 0.2856 12.6616 36 1 1.9103 0.6178 10.3809 37 1 2.4220 0.5058 7.8844 38 1 1.1225 0.0558 3.3853 39 1 2.1314 1.2874 2.5100 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:08 Heat of formation + Delta-G solvation = -56.856634 kcal Electronic energy + Delta-G solvation = -23622.721407 eV Core-core repulsion = 19854.425439 eV Total energy + Delta-G solvation = -3768.295968 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.55146 -41.00328 -39.76304 -38.03002 -37.66112 -37.08077 -35.67005 -32.67343 -31.10757 -30.74039 -29.35924 -27.19045 -26.61365 -25.54993 -23.68004 -21.43073 -21.00873 -20.67167 -20.02981 -19.58587 -18.64346 -17.56308 -17.30509 -17.18746 -17.02199 -16.84684 -16.61477 -16.05152 -16.04054 -15.55750 -15.22786 -14.91197 -14.57288 -14.46993 -14.37041 -14.29882 -14.07966 -13.95484 -13.93917 -13.57496 -13.41551 -13.21825 -13.07519 -12.93928 -12.26149 -12.13306 -11.99033 -11.97757 -11.91663 -11.34698 -11.11865 -10.42606 -10.35629 -9.98176 -9.36670 -5.07828 -1.11355 0.33901 1.30054 1.45563 1.59077 1.61607 1.82472 1.93321 1.98997 2.30432 2.40053 2.66025 2.97806 3.13440 3.20775 3.27127 3.56297 3.68473 3.71133 3.77064 3.83465 3.92568 3.97302 4.07367 4.23934 4.26546 4.31316 4.47843 4.51050 4.56471 4.57016 4.64849 4.66577 4.84648 4.89511 5.00070 5.15100 5.52476 5.73404 6.12299 6.30762 6.68197 7.02385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.424 3.576 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.609 4.609 6 H 0.155 0.845 7 C -0.097 4.097 8 C -0.115 4.115 9 H 0.096 0.904 10 C 0.136 3.864 11 N -0.733 5.733 12 C 0.590 3.410 13 O -0.523 6.523 14 C -0.060 4.060 15 C -0.074 4.074 16 C -0.211 4.211 17 C -0.033 4.033 18 O -0.542 6.542 19 Si 0.687 3.313 20 C 0.035 3.965 21 N -0.536 5.536 22 C -0.113 4.113 23 H 0.128 0.872 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.395 0.605 31 H 0.151 0.849 32 H 0.111 0.889 33 H 0.377 0.623 34 H -0.256 1.256 35 H -0.258 1.258 36 H 0.176 0.824 37 H 0.418 0.582 38 H 0.088 0.912 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 6.337 1.824 7.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.135 4.135 9 H 0.114 0.886 10 C 0.013 3.987 11 N -0.385 5.385 12 C 0.378 3.622 13 O -0.398 6.398 14 C -0.172 4.172 15 C -0.100 4.100 16 C -0.218 4.218 17 C -0.145 4.145 18 O -0.347 6.347 19 Si 0.589 3.411 20 C -0.101 4.101 21 N -0.132 5.132 22 C -0.151 4.151 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.229 0.771 31 H 0.168 0.832 32 H 0.129 0.871 33 H 0.224 0.776 34 H -0.181 1.181 35 H -0.183 1.183 36 H 0.193 0.807 37 H 0.255 0.745 38 H 0.107 0.893 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.820 5.789 1.734 6.311 hybrid contribution -0.200 0.080 0.109 0.242 sum -2.021 5.869 1.843 6.475 Atomic orbital electron populations 1.30231 1.26592 1.11694 1.11888 1.07800 0.78491 0.75851 0.77266 1.93608 1.79234 1.34183 1.86307 1.93618 1.79078 1.66971 1.53786 1.31779 1.07711 1.12259 1.20055 0.82758 1.22599 0.90717 1.04653 0.95607 1.22459 0.98083 0.97675 0.95233 0.88593 1.21198 1.02471 0.95372 0.79672 1.45826 1.73675 1.09737 1.09235 1.17039 0.76591 0.85816 0.82766 1.90893 1.51241 1.15798 1.81873 1.20376 1.18222 0.83876 0.94730 1.21230 0.99411 0.99692 0.89709 1.19912 1.12217 0.92614 0.97018 1.24374 0.88433 1.05262 0.96451 1.86505 1.16609 1.43110 1.88455 0.95152 0.86059 0.79993 0.79869 1.21883 1.05170 0.98956 0.84119 1.41918 1.54726 1.07451 1.09089 1.22844 0.99630 0.98285 0.94305 0.85293 0.85168 0.85270 0.87957 0.88705 0.90329 0.90600 0.77098 0.83172 0.87129 0.77567 1.18052 1.18251 0.80705 0.74457 0.89313 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.92 10.62 101.05 1.07 4.00 16 2 S 2.42 -4.41 5.30 -107.50 -0.57 -4.98 16 3 O -0.94 -1.47 17.34 -57.83 -1.00 -2.47 16 4 O -0.94 -2.58 18.10 -57.83 -1.05 -3.63 16 5 C -0.61 2.55 3.81 -25.92 -0.10 2.46 16 6 H 0.15 -0.91 7.72 -51.93 -0.40 -1.31 16 7 C -0.10 0.34 7.26 -25.92 -0.19 0.15 16 8 C -0.11 0.51 3.94 -89.81 -0.35 0.16 16 9 H 0.10 -0.51 8.14 -51.93 -0.42 -0.94 16 10 C 0.14 -0.35 5.35 -4.05 -0.02 -0.38 16 11 N -0.73 1.88 5.55 -61.62 -0.34 1.53 16 12 C 0.59 0.75 7.79 -12.85 -0.10 0.65 16 13 O -0.52 -2.93 16.88 5.20 0.09 -2.84 16 14 C -0.06 -0.01 7.06 -81.98 -0.58 -0.59 16 15 C -0.07 -0.12 10.59 -39.12 -0.41 -0.53 16 16 C -0.21 0.09 5.44 -105.02 -0.57 -0.48 16 17 C -0.03 0.02 3.02 36.00 0.11 0.12 16 18 O -0.54 -0.24 12.88 -35.23 -0.45 -0.69 16 19 Si 0.69 -1.50 30.59 -169.99 -5.20 -6.70 16 20 C 0.04 -0.10 10.45 -16.91 -0.18 -0.28 16 21 N -0.54 1.80 5.99 -9.39 -0.06 1.74 16 22 C -0.11 0.57 7.16 -25.92 -0.19 0.38 16 23 H 0.13 -0.80 8.14 -51.93 -0.42 -1.23 16 24 H 0.13 -0.56 8.14 -51.92 -0.42 -0.98 16 25 H 0.13 -0.75 8.14 -51.92 -0.42 -1.18 16 26 H 0.10 -0.35 8.10 -51.93 -0.42 -0.77 16 27 H 0.09 -0.35 8.10 -51.92 -0.42 -0.77 16 28 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 29 H 0.08 -0.16 7.39 -51.93 -0.38 -0.54 16 30 H 0.40 -2.24 7.60 -40.82 -0.31 -2.55 16 31 H 0.15 0.42 8.06 -52.48 -0.42 -0.01 16 32 H 0.11 0.05 7.96 -51.93 -0.41 -0.37 16 33 H 0.38 -1.35 8.70 45.56 0.40 -0.95 16 34 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 35 H -0.26 0.06 7.11 56.52 0.40 0.46 16 36 H 0.18 -1.02 6.19 -52.49 -0.32 -1.35 16 37 H 0.42 -2.86 8.19 -40.82 -0.33 -3.19 16 38 H 0.09 -0.54 8.10 -51.93 -0.42 -0.96 16 39 H 0.11 -0.56 7.48 -51.93 -0.39 -0.95 16 LS Contribution 343.62 15.07 5.18 5.18 Total: 0.00 -15.27 343.62 -10.07 -25.34 By element: Atomic # 1 Polarization: -12.98 SS G_CDS: -5.16 Total: -18.14 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.51 Total: 5.66 kcal Atomic # 7 Polarization: 3.68 SS G_CDS: -0.40 Total: 3.28 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -2.42 Total: -9.63 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.20 Total: -6.70 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -0.57 Total: -4.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -15.27 -10.07 -25.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.521 kcal (2) G-P(sol) polarization free energy of solvation -15.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds