Wall clock time and date at job start Tue Mar 9 2021 13:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42101 * 108.57792 * 2 1 4 4 O 1.42099 * 108.57912 * 228.97075 * 2 1 3 5 5 C 1.81400 * 101.92193 * 114.48223 * 2 1 3 6 6 H 1.09003 * 112.84652 * 53.80362 * 5 2 1 7 7 C 1.53778 * 113.61646 * 185.00218 * 5 2 1 8 8 C 1.53782 * 87.08123 * 139.98469 * 7 5 2 9 9 H 1.09004 * 113.60984 * 219.93214 * 8 7 5 10 10 C 1.52998 * 113.61665 * 89.11817 * 8 7 5 11 11 N 1.46496 * 109.46846 * 174.99674 * 10 8 7 12 12 C 1.34777 * 119.99613 * 179.97438 * 11 10 8 13 13 O 1.21691 * 120.00306 * 0.02562 * 12 11 10 14 14 C 1.46686 * 119.99903 * 180.02562 * 12 11 10 15 15 C 1.37867 * 126.23342 * 179.71746 * 14 12 11 16 16 C 1.39838 * 107.08639 * 179.90735 * 15 14 12 17 17 C 1.50694 * 126.06768 * 180.13614 * 16 15 14 18 18 O 1.42902 * 109.47305 * 300.28590 * 17 16 15 19 19 Si 1.86303 * 109.47205 * 180.28688 * 17 16 15 20 20 C 1.35451 * 107.86269 * 0.36032 * 16 15 14 21 21 N 1.35536 * 108.87031 * 359.77737 * 20 16 15 22 22 C 1.53777 * 87.08021 * 334.56399 * 8 7 5 23 23 H 1.08997 * 109.47711 * 305.51645 * 1 2 3 24 24 H 1.09004 * 109.47278 * 65.51829 * 1 2 3 25 25 H 1.09003 * 109.47076 * 185.51293 * 1 2 3 26 26 H 1.09003 * 113.61560 * 25.43092 * 7 5 2 27 27 H 1.09011 * 113.61151 * 254.53319 * 7 5 2 28 28 H 1.09002 * 109.47106 * 54.99725 * 10 8 7 29 29 H 1.08999 * 109.46731 * 294.99613 * 10 8 7 30 30 H 0.96996 * 120.00516 * 0.02562 * 11 10 8 31 31 H 1.08007 * 126.45911 * 0.03308 * 15 14 12 32 32 H 1.08999 * 109.47211 * 60.28789 * 17 16 15 33 33 H 0.96700 * 113.99835 * 300.00390 * 18 17 16 34 34 H 1.48499 * 110.00319 * 179.97438 * 19 17 16 35 35 H 1.48499 * 109.99767 * 301.32126 * 19 17 16 36 36 H 1.07999 * 125.56154 * 179.75652 * 20 16 15 37 37 H 0.96998 * 125.67653 * 180.02562 * 21 20 16 38 38 H 1.09003 * 113.61309 * 139.98350 * 22 8 7 39 39 H 1.08996 * 113.61943 * 270.88534 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7355 1.6153 6 1 1.6957 -1.6957 1.7677 7 6 3.6893 -0.7533 1.9509 8 6 3.2919 -0.3791 3.3886 9 1 3.9585 0.3496 3.8500 10 6 3.0230 -1.5894 4.2850 11 7 2.7709 -1.1360 5.6550 12 6 2.5079 -2.0345 6.6245 13 8 2.4802 -3.2224 6.3620 14 6 2.2549 -1.5805 7.9962 15 6 1.9691 -2.3826 9.0804 16 6 1.8033 -1.5390 10.1833 17 6 1.4812 -1.9714 11.5905 18 8 0.2367 -2.6738 11.5999 19 14 1.3556 -0.4710 12.6878 20 6 1.9787 -0.2640 9.7612 21 7 2.2537 -0.2755 8.4340 22 6 2.0176 0.2405 2.7913 23 1 -0.3634 0.5970 0.8364 24 1 -0.3634 0.4259 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 4.2603 0.0218 1.4397 27 1 4.1439 -1.7405 1.8664 28 1 3.8906 -2.2492 4.2745 29 1 2.1515 -2.1292 3.9147 30 1 2.7926 -0.1891 5.8642 31 1 1.8903 -3.4598 9.0788 32 1 2.2708 -2.6261 11.9592 33 1 -0.5125 -2.1508 11.2835 34 1 1.0376 -0.8838 14.0783 35 1 2.6331 0.2856 12.6616 36 1 1.9103 0.6178 10.3809 37 1 2.4220 0.5058 7.8844 38 1 1.1225 0.0558 3.3853 39 1 2.1314 1.2874 2.5100 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:07 Heat of formation + Delta-G solvation = -68.351268 kcal Electronic energy + Delta-G solvation = -23623.219852 eV Core-core repulsion = 19854.425439 eV Total energy + Delta-G solvation = -3768.794413 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.46324 -40.81818 -39.71618 -38.01335 -37.62794 -37.06352 -35.65172 -32.58230 -31.03893 -30.43500 -29.18999 -26.85185 -26.51268 -25.35017 -23.61229 -21.36767 -20.87813 -20.53793 -19.90262 -19.37761 -18.44920 -17.50021 -17.16582 -17.12990 -16.91062 -16.70361 -16.58169 -15.99736 -15.83709 -15.46203 -15.09464 -14.82653 -14.43781 -14.41238 -14.11822 -13.96446 -13.92483 -13.91389 -13.62810 -13.48068 -13.24245 -13.20606 -13.07089 -12.76578 -12.25653 -11.98048 -11.95720 -11.65486 -11.62216 -11.39098 -10.93092 -10.35911 -10.31854 -9.91258 -9.26774 -4.91549 -0.92448 0.36511 1.41479 1.55319 1.74138 1.82163 1.91883 2.10690 2.15599 2.26174 2.62883 2.91244 3.26412 3.39876 3.47861 3.57378 3.69284 3.84782 3.99674 4.07512 4.13403 4.19137 4.24461 4.36404 4.40554 4.56674 4.60097 4.65991 4.72047 4.84505 4.90278 4.92555 4.93228 4.96803 5.03728 5.18305 5.30857 5.59334 5.73945 6.35189 6.54083 6.91771 7.04840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.418 3.582 3 O -0.978 6.978 4 O -0.995 6.995 5 C -0.594 4.594 6 H 0.175 0.825 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.112 0.888 10 C 0.134 3.866 11 N -0.711 5.711 12 C 0.588 3.412 13 O -0.578 6.578 14 C -0.068 4.068 15 C -0.107 4.107 16 C -0.228 4.228 17 C -0.053 4.053 18 O -0.566 6.566 19 Si 0.802 3.198 20 C 0.060 3.940 21 N -0.514 5.514 22 C -0.107 4.107 23 H 0.154 0.846 24 H 0.129 0.871 25 H 0.148 0.852 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.414 0.586 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.393 0.607 34 H -0.312 1.312 35 H -0.272 1.272 36 H 0.215 0.785 37 H 0.438 0.562 38 H 0.109 0.891 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 8.852 2.646 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.976 6.976 4 O -0.992 6.992 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.152 4.152 8 C -0.124 4.124 9 H 0.130 0.870 10 C 0.011 3.989 11 N -0.363 5.363 12 C 0.376 3.624 13 O -0.457 6.457 14 C -0.181 4.181 15 C -0.134 4.134 16 C -0.234 4.234 17 C -0.162 4.162 18 O -0.374 6.374 19 Si 0.707 3.293 20 C -0.078 4.078 21 N -0.111 5.111 22 C -0.145 4.145 23 H 0.173 0.827 24 H 0.148 0.852 25 H 0.166 0.834 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.251 0.749 31 H 0.139 0.861 32 H 0.107 0.893 33 H 0.243 0.757 34 H -0.241 1.241 35 H -0.198 1.198 36 H 0.232 0.768 37 H 0.280 0.720 38 H 0.127 0.873 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.775 8.377 2.454 9.160 hybrid contribution 0.078 -0.770 -0.069 0.777 sum -2.697 7.608 2.385 8.416 Atomic orbital electron populations 1.30100 1.22679 1.13584 1.13102 1.07558 0.79758 0.74439 0.77517 1.93547 1.80879 1.35978 1.87151 1.93544 1.81036 1.67827 1.56837 1.31688 1.07495 1.13359 1.17993 0.80769 1.22740 0.91274 1.04666 0.96559 1.22334 0.98835 0.97071 0.94151 0.87034 1.21215 1.01809 0.96100 0.79765 1.45641 1.71851 1.10226 1.08615 1.17229 0.76096 0.85433 0.83618 1.90862 1.53975 1.18129 1.82757 1.20089 1.18936 0.85216 0.93899 1.21209 1.01428 0.99035 0.91691 1.19947 1.13593 0.93476 0.96428 1.24738 0.87688 1.06345 0.97462 1.86456 1.17619 1.44591 1.88725 0.93907 0.83362 0.77011 0.74997 1.22367 1.02206 0.99025 0.84196 1.41843 1.53222 1.06831 1.09219 1.22934 1.00033 0.98159 0.93409 0.82723 0.85201 0.83372 0.88255 0.88877 0.91804 0.90858 0.74941 0.86064 0.89258 0.75698 1.24061 1.19831 0.76825 0.72019 0.87279 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.59 10.62 113.37 1.20 7.79 16 2 S 2.42 -7.27 5.30 -56.49 -0.30 -7.57 16 3 O -0.98 -4.10 17.34 -127.37 -2.21 -6.31 16 4 O -1.00 -7.46 18.10 -127.37 -2.30 -9.77 16 5 C -0.59 5.36 3.81 31.12 0.12 5.48 16 6 H 0.17 -2.27 7.72 -2.39 -0.02 -2.29 16 7 C -0.11 0.78 7.26 31.12 0.23 1.00 16 8 C -0.10 1.06 3.94 -10.27 -0.04 1.02 16 9 H 0.11 -1.43 8.14 -2.39 -0.02 -1.45 16 10 C 0.13 -0.76 5.35 86.38 0.46 -0.30 16 11 N -0.71 4.32 5.55 -467.09 -2.59 1.73 16 12 C 0.59 1.83 7.79 86.45 0.67 2.50 16 13 O -0.58 -7.75 16.88 -4.32 -0.07 -7.82 16 14 C -0.07 -0.03 7.06 40.35 0.28 0.25 16 15 C -0.11 -0.53 10.59 22.57 0.24 -0.29 16 16 C -0.23 0.20 5.44 -20.12 -0.11 0.10 16 17 C -0.05 0.02 3.02 71.23 0.22 0.23 16 18 O -0.57 -1.14 12.88 -148.98 -1.92 -3.06 16 19 Si 0.80 -4.42 30.59 68.60 2.10 -2.32 16 20 C 0.06 -0.50 10.45 83.48 0.87 0.38 16 21 N -0.51 4.59 5.99 -183.62 -1.10 3.49 16 22 C -0.11 1.30 7.16 31.12 0.22 1.52 16 23 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 24 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 25 H 0.15 -2.02 8.14 -2.39 -0.02 -2.04 16 26 H 0.10 -0.60 8.10 -2.39 -0.02 -0.62 16 27 H 0.09 -0.61 8.10 -2.38 -0.02 -0.63 16 28 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.07 -0.34 7.39 -2.39 -0.02 -0.36 16 30 H 0.41 -5.67 7.60 -92.71 -0.70 -6.37 16 31 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 32 H 0.09 0.27 7.96 -2.39 -0.02 0.25 16 33 H 0.39 -2.69 8.70 -74.06 -0.64 -3.34 16 34 H -0.31 -1.23 7.11 99.48 0.71 -0.52 16 35 H -0.27 0.81 7.11 99.48 0.71 1.52 16 36 H 0.22 -3.47 6.19 -2.91 -0.02 -3.49 16 37 H 0.44 -7.52 8.19 -92.71 -0.76 -8.28 16 38 H 0.11 -1.69 8.10 -2.39 -0.02 -1.71 16 39 H 0.11 -1.38 7.48 -2.39 -0.02 -1.40 16 Total: 0.00 -40.29 343.62 -5.00 -45.29 By element: Atomic # 1 Polarization: -32.36 SS G_CDS: -0.96 Total: -33.33 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 4.37 Total: 19.68 kcal Atomic # 7 Polarization: 8.91 SS G_CDS: -3.69 Total: 5.22 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -6.51 Total: -26.96 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: 2.10 Total: -2.32 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -0.30 Total: -7.57 kcal Total: -40.29 -5.00 -45.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.064 kcal (2) G-P(sol) polarization free energy of solvation -40.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds