Wall clock time and date at job start Tue Mar 9 2021 13:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 108.57813 * 2 1 4 4 O 1.42092 * 108.57999 * 228.97262 * 2 1 3 5 5 C 1.81409 * 101.91993 * 114.48574 * 2 1 3 6 6 H 1.08997 * 112.84464 * 53.80435 * 5 2 1 7 7 C 1.53782 * 113.61066 * 185.00018 * 5 2 1 8 8 C 1.53777 * 87.07748 * 139.98191 * 7 5 2 9 9 H 1.08997 * 113.61626 * 219.93134 * 8 7 5 10 10 C 1.53006 * 113.61482 * 89.11282 * 8 7 5 11 11 N 1.46502 * 109.47212 * 174.99735 * 10 8 7 12 12 C 1.34772 * 119.99849 * 180.02562 * 11 10 8 13 13 O 1.21570 * 120.00459 * 359.97438 * 12 11 10 14 14 C 1.47693 * 119.99674 * 180.02562 * 12 11 10 15 15 C 1.39830 * 120.16372 * 180.02562 * 14 12 11 16 16 F 1.35096 * 120.11199 * 359.96681 * 15 14 12 17 17 C 1.38324 * 119.77900 * 179.97438 * 15 14 12 18 18 C 1.38203 * 120.11437 * 359.97438 * 17 15 14 19 19 C 1.38455 * 120.34409 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.89429 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47131 * 119.99711 * 20 19 18 22 22 Si 1.86305 * 109.47185 * 0.02562 * 20 19 18 23 23 C 1.37863 * 120.21560 * 0.23494 * 19 18 17 24 24 C 1.53775 * 113.61418 * 282.49847 * 5 2 1 25 25 H 1.08998 * 109.47405 * 305.51429 * 1 2 3 26 26 H 1.09000 * 109.46896 * 65.51237 * 1 2 3 27 27 H 1.08996 * 109.46784 * 185.51281 * 1 2 3 28 28 H 1.08998 * 113.61591 * 25.43477 * 7 5 2 29 29 H 1.09004 * 113.61082 * 254.52888 * 7 5 2 30 30 H 1.09003 * 109.46604 * 55.00020 * 10 8 7 31 31 H 1.08991 * 109.47054 * 295.00003 * 10 8 7 32 32 H 0.96999 * 119.99703 * 0.02562 * 11 10 8 33 33 H 1.07996 * 119.94350 * 179.97438 * 17 15 14 34 34 H 1.08006 * 119.82907 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.47358 * 240.00071 * 20 19 18 36 36 H 0.96700 * 114.00311 * 300.00591 * 21 20 19 37 37 H 1.48499 * 109.99670 * 58.67633 * 22 20 19 38 38 H 1.48497 * 110.00233 * 179.97438 * 22 20 19 39 39 H 1.08000 * 120.05805 * 179.72347 * 23 19 18 40 40 H 1.09000 * 113.61386 * 105.47225 * 24 5 2 41 41 H 1.09001 * 113.61588 * 334.56537 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 1 1.6957 -1.6958 1.7677 7 6 3.6894 -0.7535 1.9508 8 6 3.2921 -0.3792 3.3885 9 1 3.9585 0.3494 3.8500 10 6 3.0231 -1.5897 4.2849 11 7 2.7710 -1.1363 5.6550 12 6 2.5088 -2.0350 6.6246 13 8 2.4811 -3.2217 6.3623 14 6 2.2541 -1.5778 8.0057 15 6 1.9824 -2.5072 9.0145 16 9 1.9511 -3.8273 8.7294 17 6 1.7455 -2.0703 10.3054 18 6 1.7778 -0.7198 10.5973 19 6 2.0464 0.2046 9.6022 20 6 2.0786 1.6748 9.9317 21 8 3.3714 2.2027 9.6283 22 14 1.7212 1.9129 11.7446 23 6 2.2793 -0.2150 8.3098 24 6 2.0176 0.2403 2.7913 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 4.2603 0.0217 1.4398 29 1 4.1439 -1.7406 1.8664 30 1 3.8907 -2.2495 4.2743 31 1 2.1516 -2.1294 3.9146 32 1 2.7927 -0.1894 5.8642 33 1 1.5349 -2.7857 11.0865 34 1 1.5926 -0.3838 11.6069 35 1 1.3254 2.1961 9.3410 36 1 4.0922 1.7845 10.1189 37 1 2.7230 1.1806 12.5602 38 1 1.7506 3.3586 12.0825 39 1 2.4841 0.5086 7.5347 40 1 1.1226 0.0556 3.3853 41 1 2.1316 1.2872 2.5100 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:33 Heat of formation + Delta-G solvation = -116.481944 kcal Electronic energy + Delta-G solvation = -27576.408791 eV Core-core repulsion = 23273.273071 eV Total energy + Delta-G solvation = -4303.135721 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.91506 -41.50563 -40.63765 -39.69969 -37.99252 -37.75226 -37.04271 -35.64881 -32.98663 -32.44293 -30.73535 -29.39659 -27.13363 -26.81518 -25.98947 -24.90746 -23.05289 -21.71855 -20.67986 -19.87538 -19.21263 -18.60904 -18.46652 -18.30772 -17.49289 -17.25875 -17.03863 -16.93210 -16.69252 -16.40128 -16.24834 -16.14393 -15.92201 -15.69773 -15.00833 -14.87465 -14.55847 -14.42193 -14.40552 -14.27089 -14.07741 -13.90265 -13.70423 -13.47378 -13.30570 -13.16649 -13.03737 -12.94300 -12.86870 -12.45123 -12.09240 -11.93257 -11.88945 -11.85797 -11.27586 -11.08166 -10.79158 -10.50051 -10.22898 -9.91825 -5.13916 -1.07312 -0.58358 -0.17450 1.06525 1.41863 1.58611 1.63121 1.80502 1.85789 2.40743 2.44284 2.70714 2.94736 3.02769 3.09703 3.17849 3.22827 3.29128 3.32538 3.38519 3.48366 3.74305 3.81265 3.81735 3.93190 3.96994 4.13372 4.25697 4.29740 4.32202 4.38057 4.51982 4.56303 4.59011 4.60102 4.61522 4.70281 4.73088 4.79278 4.94924 4.97086 5.21449 5.46596 6.17460 6.25765 7.03029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.424 3.576 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.097 4.097 8 C -0.115 4.115 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.725 5.725 12 C 0.559 3.441 13 O -0.520 6.520 14 C -0.175 4.175 15 C 0.167 3.833 16 F -0.111 7.111 17 C -0.156 4.156 18 C -0.059 4.059 19 C -0.139 4.139 20 C -0.073 4.073 21 O -0.528 6.528 22 Si 0.683 3.317 23 C -0.031 4.031 24 C -0.112 4.112 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.402 0.598 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.123 0.877 36 H 0.378 0.622 37 H -0.257 1.257 38 H -0.254 1.254 39 H 0.139 0.861 40 H 0.089 0.911 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 3.038 5.103 7.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.135 4.135 9 H 0.116 0.884 10 C 0.013 3.987 11 N -0.378 5.378 12 C 0.345 3.655 13 O -0.396 6.396 14 C -0.179 4.179 15 C 0.147 3.853 16 F -0.089 7.089 17 C -0.175 4.175 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.183 4.183 21 O -0.335 6.335 22 Si 0.584 3.416 23 C -0.050 4.050 24 C -0.150 4.150 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.121 0.879 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.238 0.762 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.226 0.774 37 H -0.182 1.182 38 H -0.178 1.178 39 H 0.157 0.843 40 H 0.107 0.893 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.240 3.083 4.560 6.387 hybrid contribution 0.456 -0.311 0.292 0.624 sum -2.784 2.772 4.852 6.243 Atomic orbital electron populations 1.30230 1.26645 1.11657 1.11874 1.07793 0.78470 0.75854 0.77262 1.93609 1.79205 1.34162 1.86300 1.93614 1.79082 1.66999 1.53832 1.31777 1.07720 1.12245 1.20061 0.82817 1.22596 0.90693 1.04604 0.95659 1.22458 0.98157 0.97680 0.95170 0.88444 1.21205 1.02404 0.95411 0.79729 1.45823 1.72869 1.10237 1.08861 1.17961 0.77217 0.85955 0.84342 1.90886 1.50124 1.15927 1.82629 1.20048 1.09908 0.94036 0.93948 1.17762 0.96677 0.78117 0.92782 1.91633 1.92613 1.30562 1.94048 1.21179 1.03962 0.97083 0.95275 1.21107 0.95333 0.92046 0.99204 1.20283 1.03363 0.96573 0.93712 1.25018 0.88506 0.90864 1.13886 1.86614 1.15437 1.63646 1.67773 0.95026 0.90782 0.82138 0.73644 1.21023 0.94190 0.93164 0.96636 1.22845 0.99667 0.98301 0.94234 0.85269 0.85206 0.85312 0.87946 0.88759 0.90371 0.90646 0.76231 0.83203 0.84030 0.85882 0.77388 1.18196 1.17839 0.84306 0.89274 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.69 10.62 101.05 1.07 3.76 16 2 S 2.42 -3.49 5.30 -107.50 -0.57 -4.06 16 3 O -0.94 -1.84 17.34 -57.83 -1.00 -2.84 16 4 O -0.94 -2.89 18.10 -57.83 -1.05 -3.94 16 5 C -0.61 2.26 3.81 -25.92 -0.10 2.16 16 6 H 0.15 -0.84 7.72 -51.93 -0.40 -1.24 16 7 C -0.10 0.29 7.26 -25.92 -0.19 0.10 16 8 C -0.11 0.43 3.94 -89.81 -0.35 0.07 16 9 H 0.10 -0.44 8.14 -51.93 -0.42 -0.86 16 10 C 0.14 -0.26 5.35 -4.04 -0.02 -0.28 16 11 N -0.72 1.17 5.51 -61.30 -0.34 0.83 16 12 C 0.56 1.06 7.77 -12.40 -0.10 0.96 16 13 O -0.52 -3.20 15.34 5.30 0.08 -3.11 16 14 C -0.18 -0.06 5.88 -104.91 -0.62 -0.68 16 15 C 0.17 0.21 7.29 -38.95 -0.28 -0.08 16 16 F -0.11 -0.46 15.55 2.25 0.04 -0.42 16 17 C -0.16 0.25 10.01 -39.56 -0.40 -0.15 16 18 C -0.06 0.18 8.66 -39.51 -0.34 -0.16 16 19 C -0.14 0.39 5.38 -104.68 -0.56 -0.17 16 20 C -0.07 0.24 2.82 36.00 0.10 0.34 16 21 O -0.53 0.95 12.77 -35.23 -0.45 0.50 16 22 Si 0.68 -2.34 29.77 -169.99 -5.06 -7.40 16 23 C -0.03 0.07 9.10 -39.19 -0.36 -0.29 16 24 C -0.11 0.49 7.16 -25.92 -0.19 0.31 16 25 H 0.13 -0.76 8.14 -51.93 -0.42 -1.18 16 26 H 0.13 -0.51 8.14 -51.92 -0.42 -0.93 16 27 H 0.13 -0.71 8.14 -51.93 -0.42 -1.13 16 28 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 29 H 0.09 -0.31 8.10 -51.93 -0.42 -0.73 16 30 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 -0.11 7.39 -51.93 -0.38 -0.50 16 32 H 0.40 -1.70 6.51 -40.82 -0.27 -1.97 16 33 H 0.15 -0.51 8.06 -52.49 -0.42 -0.94 16 34 H 0.14 -0.73 4.86 -52.48 -0.25 -0.99 16 35 H 0.12 -0.53 7.96 -51.93 -0.41 -0.94 16 36 H 0.38 -1.63 8.70 45.56 0.40 -1.23 16 37 H -0.26 0.37 7.11 56.52 0.40 0.78 16 38 H -0.25 -0.08 7.11 56.52 0.40 0.33 16 39 H 0.14 -0.59 6.41 -52.49 -0.34 -0.93 16 40 H 0.09 -0.49 8.10 -51.93 -0.42 -0.91 16 41 H 0.11 -0.48 7.48 -51.93 -0.39 -0.87 16 LS Contribution 359.03 15.07 5.41 5.41 Total: 0.00 -14.29 359.03 -10.31 -24.60 By element: Atomic # 1 Polarization: -10.41 SS G_CDS: -5.04 Total: -15.46 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.33 Total: 5.90 kcal Atomic # 7 Polarization: 1.17 SS G_CDS: -0.34 Total: 0.83 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -2.42 Total: -9.39 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.04 Total: -0.42 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: -5.06 Total: -7.40 kcal Atomic # 16 Polarization: -3.49 SS G_CDS: -0.57 Total: -4.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -14.29 -10.31 -24.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.883 kcal (2) G-P(sol) polarization free energy of solvation -14.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds