Wall clock time and date at job start Tue Mar 9 2021 13:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42098 * 108.57813 * 2 1 4 4 O 1.42092 * 108.57999 * 228.97262 * 2 1 3 5 5 C 1.81409 * 101.91993 * 114.48574 * 2 1 3 6 6 H 1.08997 * 112.84464 * 53.80435 * 5 2 1 7 7 C 1.53782 * 113.61066 * 185.00018 * 5 2 1 8 8 C 1.53777 * 87.07748 * 139.98191 * 7 5 2 9 9 H 1.08997 * 113.61626 * 219.93134 * 8 7 5 10 10 C 1.53006 * 113.61482 * 89.11282 * 8 7 5 11 11 N 1.46502 * 109.47212 * 174.99735 * 10 8 7 12 12 C 1.34772 * 119.99849 * 180.02562 * 11 10 8 13 13 O 1.21570 * 120.00459 * 359.97438 * 12 11 10 14 14 C 1.47693 * 119.99674 * 180.02562 * 12 11 10 15 15 C 1.39830 * 120.16372 * 180.02562 * 14 12 11 16 16 F 1.35096 * 120.11199 * 359.96681 * 15 14 12 17 17 C 1.38324 * 119.77900 * 179.97438 * 15 14 12 18 18 C 1.38203 * 120.11437 * 359.97438 * 17 15 14 19 19 C 1.38455 * 120.34409 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.89429 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47131 * 119.99711 * 20 19 18 22 22 Si 1.86305 * 109.47185 * 0.02562 * 20 19 18 23 23 C 1.37863 * 120.21560 * 0.23494 * 19 18 17 24 24 C 1.53775 * 113.61418 * 282.49847 * 5 2 1 25 25 H 1.08998 * 109.47405 * 305.51429 * 1 2 3 26 26 H 1.09000 * 109.46896 * 65.51237 * 1 2 3 27 27 H 1.08996 * 109.46784 * 185.51281 * 1 2 3 28 28 H 1.08998 * 113.61591 * 25.43477 * 7 5 2 29 29 H 1.09004 * 113.61082 * 254.52888 * 7 5 2 30 30 H 1.09003 * 109.46604 * 55.00020 * 10 8 7 31 31 H 1.08991 * 109.47054 * 295.00003 * 10 8 7 32 32 H 0.96999 * 119.99703 * 0.02562 * 11 10 8 33 33 H 1.07996 * 119.94350 * 179.97438 * 17 15 14 34 34 H 1.08006 * 119.82907 * 180.02562 * 18 17 15 35 35 H 1.08999 * 109.47358 * 240.00071 * 20 19 18 36 36 H 0.96700 * 114.00311 * 300.00591 * 21 20 19 37 37 H 1.48499 * 109.99670 * 58.67633 * 22 20 19 38 38 H 1.48497 * 110.00233 * 179.97438 * 22 20 19 39 39 H 1.08000 * 120.05805 * 179.72347 * 23 19 18 40 40 H 1.09000 * 113.61386 * 105.47225 * 24 5 2 41 41 H 1.09001 * 113.61588 * 334.56537 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 1 1.6957 -1.6958 1.7677 7 6 3.6894 -0.7535 1.9508 8 6 3.2921 -0.3792 3.3885 9 1 3.9585 0.3494 3.8500 10 6 3.0231 -1.5897 4.2849 11 7 2.7710 -1.1363 5.6550 12 6 2.5088 -2.0350 6.6246 13 8 2.4811 -3.2217 6.3623 14 6 2.2541 -1.5778 8.0057 15 6 1.9824 -2.5072 9.0145 16 9 1.9511 -3.8273 8.7294 17 6 1.7455 -2.0703 10.3054 18 6 1.7778 -0.7198 10.5973 19 6 2.0464 0.2046 9.6022 20 6 2.0786 1.6748 9.9317 21 8 3.3714 2.2027 9.6283 22 14 1.7212 1.9129 11.7446 23 6 2.2793 -0.2150 8.3098 24 6 2.0176 0.2403 2.7913 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3633 -1.0229 0.0987 28 1 4.2603 0.0217 1.4398 29 1 4.1439 -1.7406 1.8664 30 1 3.8907 -2.2495 4.2743 31 1 2.1516 -2.1294 3.9146 32 1 2.7927 -0.1894 5.8642 33 1 1.5349 -2.7857 11.0865 34 1 1.5926 -0.3838 11.6069 35 1 1.3254 2.1961 9.3410 36 1 4.0922 1.7845 10.1189 37 1 2.7230 1.1806 12.5602 38 1 1.7506 3.3586 12.0825 39 1 2.4841 0.5086 7.5347 40 1 1.1226 0.0556 3.3853 41 1 2.1316 1.2872 2.5100 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:32 Heat of formation + Delta-G solvation = -124.505953 kcal Electronic energy + Delta-G solvation = -27576.756739 eV Core-core repulsion = 23273.273071 eV Total energy + Delta-G solvation = -4303.483668 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.01325 -41.45493 -40.42777 -39.64692 -38.00860 -37.57266 -37.05871 -35.67372 -32.87013 -32.28902 -30.45102 -29.24597 -26.84417 -26.62484 -25.83933 -24.75209 -22.92310 -21.69324 -20.50782 -19.75467 -19.07626 -18.47851 -18.34278 -18.23243 -17.37867 -17.14742 -16.98370 -16.91756 -16.68883 -16.21014 -16.17746 -16.07451 -15.74661 -15.55700 -14.88549 -14.74273 -14.49705 -14.37955 -14.12324 -13.97486 -13.91881 -13.62509 -13.56968 -13.29352 -13.22608 -13.15850 -13.06630 -12.84498 -12.74107 -12.29325 -11.97422 -11.74246 -11.64394 -11.59838 -11.29041 -10.92255 -10.63385 -10.44456 -10.13806 -9.82136 -4.87470 -0.91910 -0.49347 -0.02299 1.32297 1.60736 1.64164 1.82573 1.92422 2.03239 2.48037 2.63102 2.91652 3.05494 3.26433 3.32766 3.40194 3.42826 3.52285 3.56427 3.58078 3.66716 4.01952 4.07917 4.11740 4.13832 4.25027 4.36415 4.48795 4.56623 4.60511 4.62863 4.70989 4.79366 4.82498 4.88884 4.91248 4.93399 4.96152 4.97161 5.14609 5.19129 5.31863 5.60278 6.34438 6.50913 7.03285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.420 3.580 3 O -0.978 6.978 4 O -0.995 6.995 5 C -0.594 4.594 6 H 0.175 0.825 7 C -0.112 4.112 8 C -0.106 4.106 9 H 0.110 0.890 10 C 0.134 3.866 11 N -0.706 5.706 12 C 0.553 3.447 13 O -0.573 6.573 14 C -0.188 4.188 15 C 0.133 3.867 16 F -0.137 7.137 17 C -0.153 4.153 18 C -0.052 4.052 19 C -0.131 4.131 20 C -0.073 4.073 21 O -0.544 6.544 22 Si 0.758 3.242 23 C -0.023 4.023 24 C -0.108 4.108 25 H 0.154 0.846 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.417 0.583 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.388 0.612 37 H -0.280 1.280 38 H -0.307 1.307 39 H 0.161 0.839 40 H 0.109 0.891 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 4.348 6.399 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.608 3.392 3 O -0.975 6.975 4 O -0.992 6.992 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.151 4.151 8 C -0.126 4.126 9 H 0.128 0.872 10 C 0.011 3.989 11 N -0.359 5.359 12 C 0.341 3.659 13 O -0.453 6.453 14 C -0.192 4.192 15 C 0.112 3.888 16 F -0.116 7.116 17 C -0.172 4.172 18 C -0.069 4.069 19 C -0.132 4.132 20 C -0.182 4.182 21 O -0.352 6.352 22 Si 0.664 3.336 23 C -0.042 4.042 24 C -0.146 4.146 25 H 0.172 0.828 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.255 0.745 33 H 0.183 0.817 34 H 0.183 0.817 35 H 0.157 0.843 36 H 0.237 0.763 37 H -0.207 1.207 38 H -0.235 1.235 39 H 0.179 0.821 40 H 0.127 0.873 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.422 4.433 5.811 8.542 hybrid contribution 0.833 -0.626 -0.010 1.042 sum -3.589 3.806 5.801 7.811 Atomic orbital electron populations 1.30097 1.22668 1.13577 1.13092 1.07527 0.79757 0.74426 0.77441 1.93548 1.80877 1.35972 1.87118 1.93541 1.81042 1.67836 1.56775 1.31684 1.07448 1.13305 1.18042 0.80779 1.22729 0.91306 1.04655 0.96430 1.22343 0.98906 0.97086 0.94227 0.87203 1.21222 1.01785 0.96086 0.79791 1.45712 1.71182 1.10605 1.08431 1.18300 0.76615 0.85579 0.85395 1.90853 1.52853 1.18119 1.83511 1.20041 1.11079 0.95030 0.93026 1.18227 0.98869 0.77317 0.94362 1.91558 1.93180 1.32467 1.94373 1.21377 1.03213 0.98115 0.94467 1.21377 0.93978 0.91299 1.00252 1.20398 1.02424 0.96898 0.93466 1.25135 0.88478 0.90437 1.14168 1.86597 1.16214 1.64152 1.68258 0.94205 0.89152 0.78043 0.72185 1.21205 0.93206 0.92204 0.97571 1.22933 1.00025 0.98187 0.93468 0.82757 0.85181 0.83362 0.88245 0.88830 0.91789 0.90818 0.74481 0.81707 0.81711 0.84281 0.76253 1.20693 1.23510 0.82136 0.87294 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.09 10.62 113.37 1.20 7.30 16 2 S 2.42 -5.24 5.30 -56.49 -0.30 -5.54 16 3 O -0.98 -5.01 17.34 -127.37 -2.21 -7.21 16 4 O -0.99 -8.10 18.10 -127.37 -2.30 -10.40 16 5 C -0.59 4.66 3.81 31.12 0.12 4.78 16 6 H 0.17 -2.09 7.72 -2.39 -0.02 -2.11 16 7 C -0.11 0.62 7.26 31.12 0.23 0.85 16 8 C -0.11 0.87 3.94 -10.27 -0.04 0.83 16 9 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 10 C 0.13 -0.53 5.35 86.38 0.46 -0.07 16 11 N -0.71 2.60 5.51 -466.12 -2.57 0.03 16 12 C 0.55 2.54 7.77 86.74 0.67 3.21 16 13 O -0.57 -8.28 15.34 -3.94 -0.06 -8.34 16 14 C -0.19 -0.17 5.88 -20.05 -0.12 -0.29 16 15 C 0.13 0.44 7.29 22.68 0.17 0.61 16 16 F -0.14 -1.47 15.55 44.97 0.70 -0.77 16 17 C -0.15 0.57 10.01 22.28 0.22 0.79 16 18 C -0.05 0.41 8.66 22.31 0.19 0.60 16 19 C -0.13 1.01 5.38 -19.90 -0.11 0.90 16 20 C -0.07 0.65 2.82 71.23 0.20 0.85 16 21 O -0.54 3.03 12.77 -148.98 -1.90 1.13 16 22 Si 0.76 -6.26 29.77 68.60 2.04 -4.22 16 23 C -0.02 0.14 9.10 22.52 0.20 0.35 16 24 C -0.11 1.12 7.16 31.12 0.22 1.34 16 25 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 26 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 27 H 0.15 -1.92 8.14 -2.39 -0.02 -1.94 16 28 H 0.10 -0.48 8.10 -2.39 -0.02 -0.50 16 29 H 0.09 -0.51 8.10 -2.39 -0.02 -0.53 16 30 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 -0.24 7.39 -2.39 -0.02 -0.25 16 32 H 0.42 -4.21 6.51 -92.71 -0.60 -4.82 16 33 H 0.17 -1.23 8.06 -2.91 -0.02 -1.25 16 34 H 0.17 -2.12 4.86 -2.91 -0.01 -2.14 16 35 H 0.14 -1.62 7.96 -2.39 -0.02 -1.64 16 36 H 0.39 -4.00 8.70 -74.06 -0.64 -4.64 16 37 H -0.28 1.21 7.11 99.48 0.71 1.91 16 38 H -0.31 -0.29 7.11 99.48 0.71 0.42 16 39 H 0.16 -1.78 6.41 -2.91 -0.02 -1.80 16 40 H 0.11 -1.50 8.10 -2.39 -0.02 -1.52 16 41 H 0.11 -1.17 7.48 -2.39 -0.02 -1.19 16 Total: 0.00 -36.75 359.03 -3.09 -39.84 By element: Atomic # 1 Polarization: -26.44 SS G_CDS: -0.12 Total: -26.56 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 3.63 Total: 22.05 kcal Atomic # 7 Polarization: 2.60 SS G_CDS: -2.57 Total: 0.03 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -6.48 Total: -24.83 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.70 Total: -0.77 kcal Atomic # 14 Polarization: -6.26 SS G_CDS: 2.04 Total: -4.22 kcal Atomic # 16 Polarization: -5.24 SS G_CDS: -0.30 Total: -5.54 kcal Total: -36.75 -3.09 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.663 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds