Wall clock time and date at job start Tue Mar 9 2021 13:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42094 * 108.58122 * 2 1 4 4 O 1.42096 * 108.57643 * 228.97142 * 2 1 3 5 5 C 1.81399 * 101.92020 * 114.48890 * 2 1 3 6 6 H 1.08995 * 112.85398 * 53.79855 * 5 2 1 7 7 C 1.53781 * 113.61599 * 184.99875 * 5 2 1 8 8 C 1.53781 * 87.08272 * 140.06320 * 7 5 2 9 9 H 1.09006 * 113.61315 * 219.93895 * 8 7 5 10 10 C 1.52997 * 113.61559 * 89.11775 * 8 7 5 11 11 N 1.46505 * 109.47212 * 174.99892 * 10 8 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21280 * 120.00597 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99622 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47064 * 180.02562 * 14 12 11 16 16 C 1.38231 * 120.00143 * 269.72607 * 15 14 12 17 17 C 1.38236 * 120.00347 * 179.78735 * 16 15 14 18 18 C 1.38235 * 119.99524 * 0.46520 * 17 16 15 19 19 C 1.50703 * 119.99843 * 179.78738 * 18 17 16 20 20 O 1.42902 * 109.46895 * 119.98035 * 19 18 17 21 21 Si 1.86300 * 109.47272 * 359.97438 * 19 18 17 22 22 C 1.38239 * 120.00221 * 359.77040 * 18 17 16 23 23 C 1.38232 * 119.99813 * 0.02562 * 22 18 17 24 24 C 1.53785 * 87.08073 * 334.56615 * 8 7 5 25 25 H 1.09003 * 109.47146 * 305.51384 * 1 2 3 26 26 H 1.08998 * 109.46719 * 65.50953 * 1 2 3 27 27 H 1.09001 * 109.47222 * 185.51351 * 1 2 3 28 28 H 1.09008 * 113.61305 * 25.51718 * 7 5 2 29 29 H 1.08994 * 113.61330 * 254.61060 * 7 5 2 30 30 H 1.09002 * 109.47153 * 54.99884 * 10 8 7 31 31 H 1.09001 * 109.46832 * 295.00075 * 10 8 7 32 32 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 33 33 H 1.09001 * 109.47380 * 300.00190 * 14 12 11 34 34 H 1.09002 * 109.47060 * 60.00278 * 14 12 11 35 35 H 1.08007 * 119.99753 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.00581 * 180.25602 * 17 16 15 37 37 H 1.09001 * 109.47268 * 239.97800 * 19 18 17 38 38 H 0.96695 * 114.00053 * 180.02562 * 20 19 18 39 39 H 1.48501 * 109.99727 * 59.99891 * 21 19 18 40 40 H 1.48492 * 109.99911 * 181.31540 * 21 19 18 41 41 H 1.07997 * 120.00050 * 179.97438 * 22 18 17 42 42 H 1.07998 * 120.00173 * 179.97438 * 23 22 18 43 43 H 1.09001 * 113.61080 * 139.98070 * 24 8 7 44 44 H 1.09005 * 113.61662 * 270.88227 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 1 1.6957 -1.6958 1.7677 7 6 3.6893 -0.7537 1.9508 8 6 3.2919 -0.3816 3.3890 9 1 3.9582 0.3467 3.8515 10 6 3.0233 -1.5933 4.2837 11 7 2.7711 -1.1419 5.6544 12 6 2.5082 -2.0420 6.6225 13 8 2.4810 -3.2255 6.3591 14 6 2.2493 -1.5777 8.0327 15 6 1.9846 -2.7713 8.9138 16 6 0.6929 -3.2341 9.0810 17 6 0.4505 -4.3316 9.8858 18 6 1.4989 -4.9604 10.5310 19 6 1.2342 -6.1540 11.4122 20 8 1.9482 -7.2851 10.9092 21 14 -0.5913 -6.5260 11.4221 22 6 2.7902 -4.4947 10.3677 23 6 3.0329 -3.3997 9.5596 24 6 2.0173 0.2386 2.7926 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 4.2601 0.0225 1.4408 29 1 4.1441 -1.7405 1.8650 30 1 3.8910 -2.2529 4.2722 31 1 2.1519 -2.1328 3.9126 32 1 2.7925 -0.1954 5.8650 33 1 3.1212 -1.0389 8.4037 34 1 1.3821 -0.9175 8.0444 35 1 -0.1267 -2.7405 8.5797 36 1 -0.5582 -4.6958 10.0131 37 1 1.5662 -5.9369 12.4274 38 1 1.8238 -8.0914 11.4282 39 1 -1.0564 -6.8236 10.0436 40 1 -0.8693 -7.6813 12.3125 41 1 3.6092 -4.9857 10.8722 42 1 4.0417 -3.0355 9.4324 43 1 1.1223 0.0528 3.3864 44 1 2.1309 1.2860 2.5128 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:36 Heat of formation + Delta-G solvation = -79.820775 kcal Electronic energy + Delta-G solvation = -26444.122702 eV Core-core repulsion = 22456.493086 eV Total energy + Delta-G solvation = -3987.629616 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.31699 -40.58356 -39.72961 -37.99818 -37.71251 -37.04795 -35.47977 -34.15803 -31.88886 -30.80509 -30.47619 -28.81005 -27.12671 -25.97061 -24.90958 -23.75849 -22.11703 -21.41818 -20.53710 -19.80963 -18.60392 -18.51092 -18.05184 -17.61477 -17.26722 -17.03430 -16.96243 -16.85896 -16.26532 -16.09560 -15.94891 -15.37032 -14.99400 -14.78592 -14.63981 -14.43494 -14.32159 -14.27221 -14.10375 -13.90382 -13.86706 -13.50955 -13.35196 -13.23375 -13.09053 -13.06807 -13.00751 -12.79383 -12.18929 -12.09474 -11.91194 -11.89376 -11.84763 -11.66711 -11.20815 -10.89901 -10.48574 -10.17350 -9.79767 -9.54362 -4.95868 -1.07778 0.29019 0.53220 1.29998 1.61092 1.62083 1.63362 1.98515 2.02741 2.44146 2.70082 2.77194 3.03333 3.18784 3.27692 3.35375 3.37650 3.59583 3.73668 3.81496 3.82942 3.87980 3.94129 4.01037 4.06805 4.14801 4.20759 4.29896 4.33118 4.36543 4.43893 4.52609 4.55001 4.56613 4.59697 4.65458 4.72621 4.74429 4.97182 5.03143 5.12691 5.31492 5.43496 5.61641 5.63092 6.04773 6.39011 6.46305 7.18693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.609 4.609 6 H 0.153 0.847 7 C -0.098 4.098 8 C -0.113 4.113 9 H 0.097 0.903 10 C 0.135 3.865 11 N -0.733 5.733 12 C 0.512 3.488 13 O -0.526 6.526 14 C -0.102 4.102 15 C -0.065 4.065 16 C -0.100 4.100 17 C -0.112 4.112 18 C -0.072 4.072 19 C -0.076 4.076 20 O -0.535 6.535 21 Si 0.681 3.319 22 C -0.089 4.089 23 C -0.104 4.104 24 C -0.112 4.112 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.379 0.621 39 H -0.255 1.255 40 H -0.262 1.262 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 4.921 5.316 7.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.171 0.829 7 C -0.137 4.137 8 C -0.133 4.133 9 H 0.115 0.885 10 C 0.011 3.989 11 N -0.387 5.387 12 C 0.298 3.702 13 O -0.401 6.401 14 C -0.142 4.142 15 C -0.065 4.065 16 C -0.118 4.118 17 C -0.130 4.130 18 C -0.072 4.072 19 C -0.186 4.186 20 O -0.342 6.342 21 Si 0.582 3.418 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.150 4.150 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.227 0.773 39 H -0.180 1.180 40 H -0.187 1.187 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.107 0.893 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.862 4.182 3.815 6.343 hybrid contribution 0.091 -0.960 0.658 1.167 sum -2.771 3.222 4.473 6.170 Atomic orbital electron populations 1.30232 1.26650 1.11652 1.11880 1.07806 0.78479 0.75861 0.77296 1.93607 1.79204 1.34173 1.86317 1.93615 1.79081 1.66988 1.53850 1.31776 1.07750 1.12258 1.20013 0.82877 1.22605 0.90660 1.04560 0.95854 1.22454 0.98022 0.97729 0.95101 0.88486 1.21150 1.02101 0.95233 0.80371 1.45982 1.73476 1.10369 1.08848 1.20616 0.76441 0.86284 0.86813 1.90783 1.49647 1.16693 1.82937 1.20681 1.04925 0.97417 0.91162 1.19248 0.93686 0.96500 0.97111 1.20867 0.96250 0.96510 0.98147 1.20870 0.98061 0.96715 0.97348 1.19241 0.94128 0.95368 0.98506 1.24814 1.08732 0.86795 0.98248 1.86609 1.70470 1.20344 1.56795 0.95170 0.76748 0.87792 0.82054 1.20933 0.96191 0.95511 0.98114 1.20994 0.98511 0.95884 0.96799 1.22838 0.99716 0.98241 0.94171 0.85269 0.85189 0.85321 0.87997 0.88834 0.90723 0.91021 0.76322 0.87634 0.87612 0.85727 0.85580 0.90588 0.77321 1.17990 1.18720 0.85758 0.85970 0.89313 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.67 10.62 101.05 1.07 3.74 16 2 S 2.42 -3.29 5.30 -107.50 -0.57 -3.86 16 3 O -0.94 -1.87 17.35 -57.83 -1.00 -2.87 16 4 O -0.94 -2.99 18.10 -57.83 -1.05 -4.04 16 5 C -0.61 2.22 3.81 -25.92 -0.10 2.12 16 6 H 0.15 -0.81 7.72 -51.93 -0.40 -1.21 16 7 C -0.10 0.28 7.26 -25.92 -0.19 0.10 16 8 C -0.11 0.44 3.94 -89.81 -0.35 0.09 16 9 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 10 C 0.13 -0.29 5.35 -4.04 -0.02 -0.31 16 11 N -0.73 1.94 5.56 -60.29 -0.33 1.60 16 12 C 0.51 0.18 7.82 -10.99 -0.09 0.10 16 13 O -0.53 -2.87 16.03 5.56 0.09 -2.78 16 14 C -0.10 0.23 5.83 -29.03 -0.17 0.06 16 15 C -0.06 -0.06 4.37 -104.62 -0.46 -0.51 16 16 C -0.10 -0.10 9.70 -39.58 -0.38 -0.48 16 17 C -0.11 -0.17 8.67 -39.58 -0.34 -0.51 16 18 C -0.07 -0.17 5.42 -104.62 -0.57 -0.73 16 19 C -0.08 -0.06 2.81 36.01 0.10 0.04 16 20 O -0.54 -1.25 12.74 -35.23 -0.45 -1.70 16 21 Si 0.68 -0.11 29.79 -169.99 -5.06 -5.18 16 22 C -0.09 -0.22 9.61 -39.58 -0.38 -0.60 16 23 C -0.10 -0.17 9.70 -39.58 -0.38 -0.55 16 24 C -0.11 0.50 7.16 -25.91 -0.19 0.32 16 25 H 0.13 -0.76 8.14 -51.92 -0.42 -1.18 16 26 H 0.13 -0.51 8.14 -51.92 -0.42 -0.93 16 27 H 0.13 -0.70 8.14 -51.92 -0.42 -1.12 16 28 H 0.10 -0.30 8.10 -51.92 -0.42 -0.72 16 29 H 0.09 -0.29 8.10 -51.93 -0.42 -0.71 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 31 H 0.07 -0.10 7.39 -51.93 -0.38 -0.48 16 32 H 0.40 -2.27 8.47 -40.82 -0.35 -2.61 16 33 H 0.11 -0.45 8.08 -51.93 -0.42 -0.87 16 34 H 0.11 -0.49 8.08 -51.93 -0.42 -0.91 16 35 H 0.12 -0.14 8.06 -52.48 -0.42 -0.56 16 36 H 0.13 -0.05 4.88 -52.49 -0.26 -0.30 16 37 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.38 -0.70 8.74 45.56 0.40 -0.30 16 39 H -0.26 -0.84 7.11 56.52 0.40 -0.44 16 40 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 41 H 0.12 0.20 8.06 -52.49 -0.42 -0.22 16 42 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 43 H 0.09 -0.50 8.10 -51.93 -0.42 -0.92 16 44 H 0.11 -0.50 7.49 -51.93 -0.39 -0.89 16 LS Contribution 379.19 15.07 5.71 5.71 Total: 0.00 -15.39 379.19 -11.58 -26.97 By element: Atomic # 1 Polarization: -10.25 SS G_CDS: -6.47 Total: -16.72 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -2.45 Total: 2.85 kcal Atomic # 7 Polarization: 1.94 SS G_CDS: -0.33 Total: 1.60 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -2.41 Total: -11.38 kcal Atomic # 14 Polarization: -0.11 SS G_CDS: -5.06 Total: -5.18 kcal Atomic # 16 Polarization: -3.29 SS G_CDS: -0.57 Total: -3.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -15.39 -11.58 -26.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.849 kcal (2) G-P(sol) polarization free energy of solvation -15.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds