Wall clock time and date at job start Tue Mar 9 2021 13:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42094 * 108.58122 * 2 1 4 4 O 1.42096 * 108.57643 * 228.97142 * 2 1 3 5 5 C 1.81399 * 101.92020 * 114.48890 * 2 1 3 6 6 H 1.08995 * 112.85398 * 53.79855 * 5 2 1 7 7 C 1.53781 * 113.61599 * 184.99875 * 5 2 1 8 8 C 1.53781 * 87.08272 * 140.06320 * 7 5 2 9 9 H 1.09006 * 113.61315 * 219.93895 * 8 7 5 10 10 C 1.52997 * 113.61559 * 89.11775 * 8 7 5 11 11 N 1.46505 * 109.47212 * 174.99892 * 10 8 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21280 * 120.00597 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99622 * 179.97438 * 12 11 10 15 15 C 1.50703 * 109.47064 * 180.02562 * 14 12 11 16 16 C 1.38231 * 120.00143 * 269.72607 * 15 14 12 17 17 C 1.38236 * 120.00347 * 179.78735 * 16 15 14 18 18 C 1.38235 * 119.99524 * 0.46520 * 17 16 15 19 19 C 1.50703 * 119.99843 * 179.78738 * 18 17 16 20 20 O 1.42902 * 109.46895 * 119.98035 * 19 18 17 21 21 Si 1.86300 * 109.47272 * 359.97438 * 19 18 17 22 22 C 1.38239 * 120.00221 * 359.77040 * 18 17 16 23 23 C 1.38232 * 119.99813 * 0.02562 * 22 18 17 24 24 C 1.53785 * 87.08073 * 334.56615 * 8 7 5 25 25 H 1.09003 * 109.47146 * 305.51384 * 1 2 3 26 26 H 1.08998 * 109.46719 * 65.50953 * 1 2 3 27 27 H 1.09001 * 109.47222 * 185.51351 * 1 2 3 28 28 H 1.09008 * 113.61305 * 25.51718 * 7 5 2 29 29 H 1.08994 * 113.61330 * 254.61060 * 7 5 2 30 30 H 1.09002 * 109.47153 * 54.99884 * 10 8 7 31 31 H 1.09001 * 109.46832 * 295.00075 * 10 8 7 32 32 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 33 33 H 1.09001 * 109.47380 * 300.00190 * 14 12 11 34 34 H 1.09002 * 109.47060 * 60.00278 * 14 12 11 35 35 H 1.08007 * 119.99753 * 0.02562 * 16 15 14 36 36 H 1.07998 * 120.00581 * 180.25602 * 17 16 15 37 37 H 1.09001 * 109.47268 * 239.97800 * 19 18 17 38 38 H 0.96695 * 114.00053 * 180.02562 * 20 19 18 39 39 H 1.48501 * 109.99727 * 59.99891 * 21 19 18 40 40 H 1.48492 * 109.99911 * 181.31540 * 21 19 18 41 41 H 1.07997 * 120.00050 * 179.97438 * 22 18 17 42 42 H 1.07998 * 120.00173 * 179.97438 * 23 22 18 43 43 H 1.09001 * 113.61080 * 139.98070 * 24 8 7 44 44 H 1.09005 * 113.61662 * 270.88227 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 1 1.6957 -1.6958 1.7677 7 6 3.6893 -0.7537 1.9508 8 6 3.2919 -0.3816 3.3890 9 1 3.9582 0.3467 3.8515 10 6 3.0233 -1.5933 4.2837 11 7 2.7711 -1.1419 5.6544 12 6 2.5082 -2.0420 6.6225 13 8 2.4810 -3.2255 6.3591 14 6 2.2493 -1.5777 8.0327 15 6 1.9846 -2.7713 8.9138 16 6 0.6929 -3.2341 9.0810 17 6 0.4505 -4.3316 9.8858 18 6 1.4989 -4.9604 10.5310 19 6 1.2342 -6.1540 11.4122 20 8 1.9482 -7.2851 10.9092 21 14 -0.5913 -6.5260 11.4221 22 6 2.7902 -4.4947 10.3677 23 6 3.0329 -3.3997 9.5596 24 6 2.0173 0.2386 2.7926 25 1 -0.3633 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0987 28 1 4.2601 0.0225 1.4408 29 1 4.1441 -1.7405 1.8650 30 1 3.8910 -2.2529 4.2722 31 1 2.1519 -2.1328 3.9126 32 1 2.7925 -0.1954 5.8650 33 1 3.1212 -1.0389 8.4037 34 1 1.3821 -0.9175 8.0444 35 1 -0.1267 -2.7405 8.5797 36 1 -0.5582 -4.6958 10.0131 37 1 1.5662 -5.9369 12.4274 38 1 1.8238 -8.0914 11.4282 39 1 -1.0564 -6.8236 10.0436 40 1 -0.8693 -7.6813 12.3125 41 1 3.6092 -4.9857 10.8722 42 1 4.0417 -3.0355 9.4324 43 1 1.1223 0.0528 3.3864 44 1 2.1309 1.2860 2.5128 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12335836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:36 Heat of formation + Delta-G solvation = -88.349831 kcal Electronic energy + Delta-G solvation = -26444.492550 eV Core-core repulsion = 22456.493086 eV Total energy + Delta-G solvation = -3987.999464 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25037 -40.46752 -39.68845 -38.01899 -37.79091 -37.06781 -35.42747 -34.14981 -31.92785 -30.60293 -30.32046 -28.66741 -26.82994 -25.89692 -24.77366 -23.80193 -22.11654 -21.36275 -20.36323 -19.65654 -18.60122 -18.44382 -17.94506 -17.60700 -17.14988 -16.95369 -16.91707 -16.81571 -16.26098 -16.04657 -15.78849 -15.37373 -14.91451 -14.73560 -14.65220 -14.34828 -14.13142 -14.00261 -13.96522 -13.92143 -13.61484 -13.40845 -13.32871 -13.22136 -13.08751 -13.05056 -12.93594 -12.67040 -12.25663 -11.97892 -11.91172 -11.75161 -11.62540 -11.56960 -11.10338 -10.85805 -10.53651 -10.08899 -9.86125 -9.57567 -4.96886 -0.92672 0.24780 0.46845 1.27664 1.57083 1.66781 1.82295 1.92948 2.16229 2.62709 2.75680 2.91976 3.27865 3.39510 3.41027 3.52678 3.62628 3.66907 3.86505 3.91742 4.06792 4.07190 4.10993 4.15476 4.25934 4.32767 4.40027 4.47254 4.50219 4.58855 4.62519 4.65625 4.73788 4.74971 4.89762 4.92884 4.94978 4.97645 5.04378 5.10295 5.24933 5.39105 5.47182 5.55604 5.60041 6.03070 6.55871 6.58857 7.30291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.417 3.583 3 O -0.978 6.978 4 O -0.996 6.996 5 C -0.594 4.594 6 H 0.173 0.827 7 C -0.115 4.115 8 C -0.103 4.103 9 H 0.111 0.889 10 C 0.135 3.865 11 N -0.716 5.716 12 C 0.511 3.489 13 O -0.585 6.585 14 C -0.096 4.096 15 C -0.072 4.072 16 C -0.109 4.109 17 C -0.126 4.126 18 C -0.093 4.093 19 C -0.089 4.089 20 O -0.561 6.561 21 Si 0.769 3.231 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.106 4.106 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.420 0.580 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.146 0.854 36 H 0.139 0.861 37 H 0.095 0.905 38 H 0.394 0.606 39 H -0.305 1.305 40 H -0.285 1.285 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.110 0.890 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 6.468 6.513 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.606 3.394 3 O -0.975 6.975 4 O -0.993 6.993 5 C -0.705 4.705 6 H 0.190 0.810 7 C -0.154 4.154 8 C -0.123 4.123 9 H 0.129 0.871 10 C 0.011 3.989 11 N -0.369 5.369 12 C 0.298 3.702 13 O -0.465 6.465 14 C -0.136 4.136 15 C -0.073 4.073 16 C -0.127 4.127 17 C -0.144 4.144 18 C -0.093 4.093 19 C -0.197 4.197 20 O -0.371 6.371 21 Si 0.675 3.325 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.144 4.144 25 H 0.173 0.827 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.258 0.742 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.113 0.887 38 H 0.244 0.756 39 H -0.233 1.233 40 H -0.212 1.212 41 H 0.140 0.860 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.093 5.801 5.005 8.686 hybrid contribution 0.485 -1.473 0.278 1.576 sum -3.609 4.328 5.283 7.724 Atomic orbital electron populations 1.30095 1.22601 1.13566 1.13143 1.07580 0.79815 0.74451 0.77518 1.93546 1.80883 1.35950 1.87140 1.93541 1.81069 1.67839 1.56853 1.31679 1.07460 1.13319 1.18037 0.80972 1.22747 0.91262 1.04473 0.96943 1.22335 0.98725 0.97201 0.94015 0.87069 1.21097 1.01137 0.95737 0.80927 1.45848 1.71871 1.11035 1.08171 1.21066 0.75439 0.85653 0.88017 1.90767 1.52579 1.19191 1.83929 1.20764 1.07434 0.96619 0.88735 1.19610 0.93382 0.97316 0.96969 1.21234 0.97173 0.96409 0.97884 1.21131 0.98519 0.97160 0.97550 1.19505 0.94414 0.96088 0.99260 1.25089 1.09589 0.86143 0.98922 1.86563 1.71124 1.21514 1.57898 0.94210 0.74516 0.85908 0.77883 1.21096 0.96448 0.96296 0.98992 1.21256 0.99503 0.95903 0.96877 1.22923 1.00155 0.98055 0.93282 0.82677 0.85153 0.83403 0.88340 0.89142 0.92553 0.91556 0.74211 0.85138 0.84428 0.83631 0.84392 0.88690 0.75596 1.23293 1.21186 0.85974 0.84901 0.87199 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.10 10.62 113.37 1.20 7.30 16 2 S 2.42 -4.86 5.30 -56.49 -0.30 -5.16 16 3 O -0.98 -5.05 17.35 -127.37 -2.21 -7.26 16 4 O -1.00 -8.40 18.10 -127.37 -2.30 -10.70 16 5 C -0.59 4.64 3.81 31.12 0.12 4.76 16 6 H 0.17 -2.01 7.72 -2.39 -0.02 -2.03 16 7 C -0.12 0.63 7.26 31.12 0.23 0.86 16 8 C -0.10 0.92 3.94 -10.27 -0.04 0.88 16 9 H 0.11 -1.27 8.14 -2.38 -0.02 -1.28 16 10 C 0.13 -0.66 5.35 86.38 0.46 -0.20 16 11 N -0.72 4.97 5.56 -463.06 -2.57 2.40 16 12 C 0.51 -0.15 7.82 87.66 0.69 0.54 16 13 O -0.59 -6.71 16.03 -3.03 -0.05 -6.76 16 14 C -0.10 0.62 5.83 29.10 0.17 0.79 16 15 C -0.07 -0.09 4.37 -19.87 -0.09 -0.17 16 16 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 17 C -0.13 -0.42 8.67 22.27 0.19 -0.23 16 18 C -0.09 -0.50 5.42 -19.86 -0.11 -0.61 16 19 C -0.09 -0.20 2.81 71.24 0.20 0.00 16 20 O -0.56 -3.18 12.74 -148.98 -1.90 -5.08 16 21 Si 0.77 0.00 29.79 68.60 2.04 2.05 16 22 C -0.11 -0.66 9.61 22.27 0.21 -0.45 16 23 C -0.12 -0.43 9.70 22.27 0.22 -0.21 16 24 C -0.11 1.16 7.16 31.12 0.22 1.38 16 25 H 0.15 -2.24 8.14 -2.39 -0.02 -2.26 16 26 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 27 H 0.15 -1.91 8.14 -2.39 -0.02 -1.93 16 28 H 0.10 -0.46 8.10 -2.38 -0.02 -0.48 16 29 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 30 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.07 -0.23 7.39 -2.39 -0.02 -0.24 16 32 H 0.42 -5.91 8.47 -92.71 -0.79 -6.69 16 33 H 0.13 -1.48 8.08 -2.39 -0.02 -1.50 16 34 H 0.14 -1.76 8.08 -2.39 -0.02 -1.78 16 35 H 0.15 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.14 -0.07 4.88 -2.91 -0.01 -0.08 16 37 H 0.10 -0.21 7.96 -2.39 -0.02 -0.22 16 38 H 0.39 -1.15 8.74 -74.06 -0.65 -1.79 16 39 H -0.30 -2.49 7.11 99.48 0.71 -1.78 16 40 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 41 H 0.12 0.61 8.06 -2.91 -0.02 0.58 16 42 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16 43 H 0.11 -1.60 8.10 -2.39 -0.02 -1.62 16 44 H 0.11 -1.22 7.49 -2.38 -0.02 -1.24 16 Total: 0.00 -38.98 379.19 -3.77 -42.75 By element: Atomic # 1 Polarization: -26.55 SS G_CDS: -0.37 Total: -26.92 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 3.89 Total: 14.69 kcal Atomic # 7 Polarization: 4.97 SS G_CDS: -2.57 Total: 2.40 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -6.46 Total: -29.80 kcal Atomic # 14 Polarization: 0.00 SS G_CDS: 2.04 Total: 2.05 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -0.30 Total: -5.16 kcal Total: -38.98 -3.77 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12335836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.599 kcal (2) G-P(sol) polarization free energy of solvation -38.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds