Wall clock time and date at job start Tue Mar 9 2021 13:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35650 * 117.00317 * 2 1 4 4 C 1.40136 * 120.14839 * 180.02562 * 3 2 1 5 5 C 1.47532 * 120.19721 * 359.97438 * 4 3 2 6 6 O 1.21597 * 119.99409 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00534 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00272 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47386 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.84916 * 314.66924 * 9 8 7 11 11 C 1.53780 * 113.61289 * 85.85974 * 9 8 7 12 12 C 1.54057 * 86.98471 * 89.16315 * 11 9 8 13 13 H 1.08995 * 113.61352 * 270.88564 * 12 11 9 14 14 S 1.81396 * 113.62148 * 139.97562 * 12 11 9 15 15 C 1.81407 * 101.92033 * 82.50493 * 14 12 11 16 16 O 1.42100 * 108.58156 * 196.99512 * 14 12 11 17 17 O 1.42105 * 108.57989 * 328.02104 * 14 12 11 18 18 C 1.53778 * 113.61523 * 183.47052 * 9 8 7 19 19 C 1.39717 * 119.61492 * 179.68850 * 4 3 2 20 20 C 1.37788 * 119.90506 * 0.57555 * 19 4 3 21 21 C 1.50696 * 119.84726 * 179.71445 * 20 19 4 22 22 O 1.42903 * 109.47131 * 299.72422 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.72962 * 21 20 19 24 24 C 1.38547 * 120.29964 * 359.44018 * 20 19 4 25 25 C 1.38051 * 120.39167 * 0.25065 * 24 20 19 26 26 H 1.09003 * 109.47101 * 300.00578 * 1 2 3 27 27 H 1.09004 * 109.46547 * 60.00139 * 1 2 3 28 28 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99841 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47187 * 299.99854 * 8 7 5 31 31 H 1.08994 * 109.47033 * 60.00052 * 8 7 5 32 32 H 1.08999 * 113.61638 * 203.66310 * 11 9 8 33 33 H 1.08998 * 113.61611 * 334.57482 * 11 9 8 34 34 H 1.09007 * 109.46328 * 60.00403 * 15 14 12 35 35 H 1.09001 * 109.46770 * 179.97438 * 15 14 12 36 36 H 1.08991 * 109.47367 * 300.00290 * 15 14 12 37 37 H 1.08998 * 113.61719 * 25.43027 * 18 9 8 38 38 H 1.08995 * 113.61218 * 156.33833 * 18 9 8 39 39 H 1.07999 * 120.04726 * 180.28983 * 19 4 3 40 40 H 1.08999 * 109.47358 * 59.72782 * 21 20 19 41 41 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 42 42 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 43 43 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 44 44 H 1.08006 * 119.80243 * 180.27224 * 24 20 19 45 45 H 1.08001 * 119.95697 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4441 1.2855 -0.0005 5 6 4.2550 0.0530 -0.0005 6 8 3.7094 -1.0336 -0.0005 7 7 5.6004 0.1315 -0.0005 8 6 6.4056 -1.0924 -0.0011 9 6 7.8911 -0.7258 -0.0016 10 1 8.1325 0.0614 -0.7159 11 6 8.4653 -0.4797 1.4036 12 6 8.7826 -1.9865 1.4491 13 1 7.9681 -2.5924 1.8460 14 16 10.3837 -2.3694 2.2109 15 6 9.9747 -2.3388 3.9780 16 8 10.7496 -3.6953 1.8538 17 8 11.2825 -1.3037 1.9358 18 6 8.8262 -1.9435 -0.0876 19 6 4.0669 2.5362 -0.0071 20 6 3.3039 3.6835 -0.0011 21 6 3.9770 5.0318 -0.0017 22 8 4.7932 5.1573 1.1646 23 14 2.6829 6.3720 -0.0009 24 6 1.9208 3.6032 -0.0001 25 6 1.2926 2.3739 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 6.0357 0.9983 -0.0002 30 1 6.1761 -1.6788 0.8886 31 1 6.1760 -1.6779 -0.8913 32 1 9.3524 0.1536 1.4080 33 1 7.7173 -0.1674 2.1324 34 1 9.2113 -3.0882 4.1872 35 1 10.8687 -2.5584 4.5617 36 1 9.5983 -1.3519 4.2468 37 1 8.3694 -2.8122 -0.5617 38 1 9.8117 -1.7097 -0.4900 39 1 5.1448 2.6036 -0.0123 40 1 4.5984 5.1273 -0.8921 41 1 4.3053 5.0823 1.9961 42 1 1.8091 6.2335 1.1918 43 1 3.3338 7.7067 -0.0008 44 1 1.3306 4.5078 0.0002 45 1 0.2139 2.3195 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:33 Heat of formation + Delta-G solvation = -106.187200 kcal Electronic energy + Delta-G solvation = -29563.767017 eV Core-core repulsion = 25256.311874 eV Total energy + Delta-G solvation = -4307.455142 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.81131 -40.78162 -39.58443 -39.28728 -37.95933 -37.30899 -37.00876 -35.41888 -32.86503 -31.93465 -30.69788 -29.41210 -28.54745 -27.07748 -26.27805 -25.83139 -24.59518 -22.59777 -21.52330 -20.61508 -19.85714 -19.38509 -18.56514 -18.46683 -18.10378 -17.32536 -17.21971 -16.97500 -16.91219 -16.56335 -16.29376 -16.17631 -16.11414 -15.95905 -15.75778 -14.95038 -14.76336 -14.62377 -14.47298 -14.36630 -14.24044 -14.02055 -13.84434 -13.63401 -13.52170 -13.38964 -13.20794 -13.12686 -12.99362 -12.79149 -12.49306 -12.31076 -12.15397 -12.05841 -11.85404 -11.80083 -11.76532 -11.16034 -10.93482 -10.60181 -10.29490 -10.05515 -9.33908 -5.06754 -1.03773 -0.30664 0.13470 1.17222 1.48621 1.66808 1.81915 1.87243 2.04939 2.16798 2.48626 2.67431 2.73260 3.07941 3.22875 3.24320 3.31066 3.40001 3.46418 3.55608 3.60118 3.76951 3.86874 3.90628 4.00191 4.03972 4.14639 4.15545 4.21080 4.29486 4.35768 4.39273 4.45883 4.52218 4.56472 4.61275 4.61938 4.64484 4.70967 4.78895 4.83891 5.00961 5.03607 5.17489 5.38184 5.44609 6.22876 6.28248 6.48415 7.27865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.193 3.807 4 C -0.175 4.175 5 C 0.561 3.439 6 O -0.516 6.516 7 N -0.730 5.730 8 C 0.138 3.862 9 C -0.115 4.115 10 H 0.097 0.903 11 C -0.112 4.112 12 C -0.609 4.609 13 H 0.153 0.847 14 S 2.424 3.576 15 C -0.655 4.655 16 O -0.938 6.938 17 O -0.936 6.936 18 C -0.096 4.096 19 C -0.020 4.020 20 C -0.167 4.167 21 C -0.069 4.069 22 O -0.530 6.530 23 Si 0.681 3.319 24 C -0.046 4.046 25 C -0.214 4.214 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.400 0.600 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.376 0.624 42 H -0.260 1.260 43 H -0.256 1.256 44 H 0.134 0.866 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.158 4.139 0.032 6.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.190 6.190 3 C 0.144 3.856 4 C -0.179 4.179 5 C 0.348 3.652 6 O -0.391 6.391 7 N -0.384 5.384 8 C 0.014 3.986 9 C -0.135 4.135 10 H 0.115 0.885 11 C -0.150 4.150 12 C -0.718 4.718 13 H 0.171 0.829 14 S 2.606 3.394 15 C -0.805 4.805 16 O -0.935 6.935 17 O -0.933 6.933 18 C -0.135 4.135 19 C -0.039 4.039 20 C -0.168 4.168 21 C -0.178 4.178 22 O -0.336 6.336 23 Si 0.582 3.418 24 C -0.064 4.064 25 C -0.232 4.232 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.124 0.876 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.224 0.776 42 H -0.184 1.184 43 H -0.180 1.180 44 H 0.152 0.848 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.521 3.686 -0.374 5.845 hybrid contribution -0.519 0.268 1.659 1.759 sum -5.041 3.953 1.285 6.533 Atomic orbital electron populations 1.23242 0.78135 1.04788 1.01479 1.86379 1.21244 1.25201 1.86151 1.19097 0.90946 0.85077 0.90465 1.19315 0.90877 0.93843 1.13862 1.17937 0.81734 0.88714 0.76765 1.90858 1.71514 1.28614 1.48144 1.45850 1.05946 1.09844 1.76804 1.21138 0.87561 0.86768 1.03101 1.22466 0.93795 0.99182 0.98010 0.88515 1.22895 1.03060 0.90675 0.98381 1.31828 1.23167 1.07423 1.09374 0.82873 1.07797 0.77732 0.75360 0.78523 1.30239 1.12751 1.11577 1.25884 1.93614 1.81107 1.37114 1.81701 1.93609 1.59301 1.56915 1.83464 1.22572 1.01372 0.99666 0.89847 1.20971 0.99893 0.89824 0.93173 1.20072 0.93554 0.95931 1.07199 1.24934 1.02534 0.99146 0.91236 1.86599 1.36823 1.94465 1.15754 0.95069 0.79613 0.77637 0.89446 1.21000 0.93750 0.97365 0.94301 1.21236 1.00776 0.91540 1.09695 0.92356 0.92190 0.87649 0.76462 0.90926 0.90560 0.87178 0.89322 0.85341 0.85242 0.85279 0.88751 0.88127 0.84660 0.86224 0.77581 1.18449 1.18044 0.84826 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.97 16 2 O -0.28 -0.82 8.57 -40.53 -0.35 -1.16 16 3 C 0.19 0.32 6.70 -38.70 -0.26 0.06 16 4 C -0.18 -0.24 5.89 -104.84 -0.62 -0.86 16 5 C 0.56 1.54 7.76 -12.47 -0.10 1.44 16 6 O -0.52 -3.44 15.16 -16.60 -0.25 -3.70 16 7 N -0.73 0.53 5.51 -61.35 -0.34 0.19 16 8 C 0.14 -0.17 5.35 -4.04 -0.02 -0.19 16 9 C -0.11 0.35 3.93 -89.81 -0.35 0.00 16 10 H 0.10 -0.37 8.14 -51.93 -0.42 -0.80 16 11 C -0.11 0.40 7.18 -25.77 -0.19 0.21 16 12 C -0.61 1.94 3.83 -25.77 -0.10 1.84 16 13 H 0.15 -0.77 7.69 -51.93 -0.40 -1.17 16 14 S 2.42 -2.49 5.34 -107.50 -0.57 -3.07 16 15 C -0.66 2.38 10.62 101.05 1.07 3.45 16 16 O -0.94 -3.15 18.10 -57.83 -1.05 -4.20 16 17 O -0.94 -2.23 17.19 -57.83 -0.99 -3.22 16 18 C -0.10 0.24 7.26 -25.92 -0.19 0.05 16 19 C -0.02 0.02 9.09 -39.19 -0.36 -0.34 16 20 C -0.17 0.26 5.38 -104.67 -0.56 -0.30 16 21 C -0.07 0.14 2.81 36.00 0.10 0.25 16 22 O -0.53 0.43 12.77 -35.23 -0.45 -0.02 16 23 Si 0.68 -1.64 29.77 -169.99 -5.06 -6.70 16 24 C -0.05 0.09 8.66 -39.54 -0.34 -0.26 16 25 C -0.21 0.20 9.03 -39.48 -0.36 -0.16 16 26 H 0.06 -0.16 7.66 -51.93 -0.40 -0.56 16 27 H 0.06 -0.17 7.66 -51.93 -0.40 -0.57 16 28 H 0.11 -0.23 8.14 -51.93 -0.42 -0.66 16 29 H 0.40 -1.27 6.50 -40.82 -0.27 -1.53 16 30 H 0.07 -0.05 7.37 -51.93 -0.38 -0.44 16 31 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.11 -0.38 7.37 -51.93 -0.38 -0.77 16 33 H 0.09 -0.39 8.10 -51.93 -0.42 -0.82 16 34 H 0.13 -0.65 8.14 -51.92 -0.42 -1.07 16 35 H 0.13 -0.46 8.14 -51.92 -0.42 -0.88 16 36 H 0.13 -0.68 8.14 -51.93 -0.42 -1.10 16 37 H 0.09 -0.27 8.10 -51.93 -0.42 -0.69 16 38 H 0.10 -0.26 8.10 -51.93 -0.42 -0.68 16 39 H 0.14 -0.39 6.40 -52.49 -0.34 -0.73 16 40 H 0.12 -0.35 7.96 -51.93 -0.41 -0.76 16 41 H 0.38 -1.25 8.70 45.56 0.40 -0.86 16 42 H -0.26 0.12 7.11 56.52 0.40 0.53 16 43 H -0.26 -0.30 7.11 56.52 0.40 0.10 16 44 H 0.13 -0.52 4.85 -52.48 -0.25 -0.77 16 45 H 0.14 -0.43 6.30 -52.49 -0.33 -0.76 16 LS Contribution 381.55 15.07 5.75 5.75 Total: 0.00 -14.65 381.55 -10.74 -25.40 By element: Atomic # 1 Polarization: -9.27 SS G_CDS: -6.16 Total: -15.43 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.27 Total: 6.16 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -0.34 Total: 0.19 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -3.09 Total: -12.30 kcal Atomic # 14 Polarization: -1.64 SS G_CDS: -5.06 Total: -6.70 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -0.57 Total: -3.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -14.65 -10.74 -25.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.789 kcal (2) G-P(sol) polarization free energy of solvation -14.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds