Wall clock time and date at job start Tue Mar 9 2021 13:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35650 * 117.00317 * 2 1 4 4 C 1.40136 * 120.14839 * 180.02562 * 3 2 1 5 5 C 1.47532 * 120.19721 * 359.97438 * 4 3 2 6 6 O 1.21597 * 119.99409 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00534 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00272 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47386 * 179.97438 * 8 7 5 10 10 H 1.09002 * 112.84916 * 314.66924 * 9 8 7 11 11 C 1.53780 * 113.61289 * 85.85974 * 9 8 7 12 12 C 1.54057 * 86.98471 * 89.16315 * 11 9 8 13 13 H 1.08995 * 113.61352 * 270.88564 * 12 11 9 14 14 S 1.81396 * 113.62148 * 139.97562 * 12 11 9 15 15 C 1.81407 * 101.92033 * 82.50493 * 14 12 11 16 16 O 1.42100 * 108.58156 * 196.99512 * 14 12 11 17 17 O 1.42105 * 108.57989 * 328.02104 * 14 12 11 18 18 C 1.53778 * 113.61523 * 183.47052 * 9 8 7 19 19 C 1.39717 * 119.61492 * 179.68850 * 4 3 2 20 20 C 1.37788 * 119.90506 * 0.57555 * 19 4 3 21 21 C 1.50696 * 119.84726 * 179.71445 * 20 19 4 22 22 O 1.42903 * 109.47131 * 299.72422 * 21 20 19 23 23 Si 1.86305 * 109.47185 * 179.72962 * 21 20 19 24 24 C 1.38547 * 120.29964 * 359.44018 * 20 19 4 25 25 C 1.38051 * 120.39167 * 0.25065 * 24 20 19 26 26 H 1.09003 * 109.47101 * 300.00578 * 1 2 3 27 27 H 1.09004 * 109.46547 * 60.00139 * 1 2 3 28 28 H 1.08998 * 109.47493 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99841 * 0.02562 * 7 5 4 30 30 H 1.08997 * 109.47187 * 299.99854 * 8 7 5 31 31 H 1.08994 * 109.47033 * 60.00052 * 8 7 5 32 32 H 1.08999 * 113.61638 * 203.66310 * 11 9 8 33 33 H 1.08998 * 113.61611 * 334.57482 * 11 9 8 34 34 H 1.09007 * 109.46328 * 60.00403 * 15 14 12 35 35 H 1.09001 * 109.46770 * 179.97438 * 15 14 12 36 36 H 1.08991 * 109.47367 * 300.00290 * 15 14 12 37 37 H 1.08998 * 113.61719 * 25.43027 * 18 9 8 38 38 H 1.08995 * 113.61218 * 156.33833 * 18 9 8 39 39 H 1.07999 * 120.04726 * 180.28983 * 19 4 3 40 40 H 1.08999 * 109.47358 * 59.72782 * 21 20 19 41 41 H 0.96700 * 114.00311 * 300.00591 * 22 21 20 42 42 H 1.48499 * 109.99670 * 58.67633 * 23 21 20 43 43 H 1.48497 * 110.00233 * 179.97438 * 23 21 20 44 44 H 1.08006 * 119.80243 * 180.27224 * 24 20 19 45 45 H 1.08001 * 119.95697 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 3.4441 1.2855 -0.0005 5 6 4.2550 0.0530 -0.0005 6 8 3.7094 -1.0336 -0.0005 7 7 5.6004 0.1315 -0.0005 8 6 6.4056 -1.0924 -0.0011 9 6 7.8911 -0.7258 -0.0016 10 1 8.1325 0.0614 -0.7159 11 6 8.4653 -0.4797 1.4036 12 6 8.7826 -1.9865 1.4491 13 1 7.9681 -2.5924 1.8460 14 16 10.3837 -2.3694 2.2109 15 6 9.9747 -2.3388 3.9780 16 8 10.7496 -3.6953 1.8538 17 8 11.2825 -1.3037 1.9358 18 6 8.8262 -1.9435 -0.0876 19 6 4.0669 2.5362 -0.0071 20 6 3.3039 3.6835 -0.0011 21 6 3.9770 5.0318 -0.0017 22 8 4.7932 5.1573 1.1646 23 14 2.6829 6.3720 -0.0009 24 6 1.9208 3.6032 -0.0001 25 6 1.2926 2.3739 0.0000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 6.0357 0.9983 -0.0002 30 1 6.1761 -1.6788 0.8886 31 1 6.1760 -1.6779 -0.8913 32 1 9.3524 0.1536 1.4080 33 1 7.7173 -0.1674 2.1324 34 1 9.2113 -3.0882 4.1872 35 1 10.8687 -2.5584 4.5617 36 1 9.5983 -1.3519 4.2468 37 1 8.3694 -2.8122 -0.5617 38 1 9.8117 -1.7097 -0.4900 39 1 5.1448 2.6036 -0.0123 40 1 4.5984 5.1273 -0.8921 41 1 4.3053 5.0823 1.9961 42 1 1.8091 6.2335 1.1918 43 1 3.3338 7.7067 -0.0008 44 1 1.3306 4.5078 0.0002 45 1 0.2139 2.3195 0.0003 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:32 Heat of formation + Delta-G solvation = -113.889225 kcal Electronic energy + Delta-G solvation = -29564.101002 eV Core-core repulsion = 25256.311874 eV Total energy + Delta-G solvation = -4307.789127 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.78648 -40.66238 -39.60539 -39.21187 -38.01169 -37.21442 -37.06078 -35.49160 -32.79725 -31.83349 -30.45468 -29.30722 -28.41829 -26.84513 -26.14781 -25.72742 -24.50649 -22.50162 -21.54822 -20.49459 -19.78359 -19.27737 -18.46552 -18.35799 -18.07535 -17.24421 -17.14299 -16.92520 -16.87720 -16.57060 -16.16575 -16.14517 -16.05102 -15.83492 -15.62228 -14.86811 -14.68950 -14.51771 -14.47443 -14.12180 -13.97031 -13.92358 -13.62489 -13.55028 -13.41604 -13.25785 -13.21256 -13.08647 -13.04709 -12.70658 -12.42143 -12.21991 -12.03946 -11.98140 -11.68253 -11.62311 -11.58476 -11.12647 -10.88933 -10.54653 -10.29466 -10.02562 -9.28078 -4.88433 -0.92352 -0.25257 0.22856 1.34880 1.62818 1.78301 1.82577 2.00720 2.07455 2.27796 2.62932 2.69194 2.89144 3.27220 3.41415 3.42148 3.48764 3.59004 3.62553 3.67790 3.76278 4.00609 4.06518 4.14771 4.17859 4.24778 4.31121 4.36456 4.38520 4.42117 4.58181 4.60874 4.65303 4.68220 4.72171 4.77344 4.87624 4.91367 4.94286 4.95309 4.96499 5.12680 5.22794 5.28902 5.40960 5.57882 6.30584 6.51694 6.53563 7.21155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.170 3.830 4 C -0.196 4.196 5 C 0.556 3.444 6 O -0.566 6.566 7 N -0.715 5.715 8 C 0.137 3.863 9 C -0.106 4.106 10 H 0.108 0.892 11 C -0.109 4.109 12 C -0.593 4.593 13 H 0.175 0.825 14 S 2.421 3.579 15 C -0.643 4.643 16 O -0.992 6.992 17 O -0.978 6.978 18 C -0.110 4.110 19 C -0.015 4.015 20 C -0.165 4.165 21 C -0.071 4.071 22 O -0.546 6.546 23 Si 0.757 3.243 24 C -0.043 4.043 25 C -0.213 4.213 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.413 0.587 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.386 0.614 42 H -0.281 1.281 43 H -0.307 1.307 44 H 0.156 0.844 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.109 5.653 0.602 8.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.200 4.200 5 C 0.345 3.655 6 O -0.445 6.445 7 N -0.369 5.369 8 C 0.014 3.986 9 C -0.126 4.126 10 H 0.127 0.873 11 C -0.147 4.147 12 C -0.705 4.705 13 H 0.193 0.807 14 S 2.609 3.391 15 C -0.796 4.796 16 O -0.989 6.989 17 O -0.975 6.975 18 C -0.149 4.149 19 C -0.034 4.034 20 C -0.165 4.165 21 C -0.180 4.180 22 O -0.354 6.354 23 Si 0.663 3.337 24 C -0.060 4.060 25 C -0.231 4.231 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.125 0.875 29 H 0.251 0.749 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.170 0.830 40 H 0.149 0.851 41 H 0.236 0.764 42 H -0.208 1.208 43 H -0.235 1.235 44 H 0.173 0.827 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.416 5.200 0.174 7.510 hybrid contribution -0.266 -0.115 1.521 1.548 sum -5.682 5.085 1.695 7.811 Atomic orbital electron populations 1.23441 0.76571 1.05434 1.02839 1.86332 1.23154 1.26440 1.86564 1.19430 0.91419 0.85506 0.91455 1.19402 0.91071 0.94027 1.15495 1.18273 0.82609 0.88600 0.76066 1.90822 1.72561 1.30339 1.50817 1.45753 1.05066 1.10748 1.75293 1.21147 0.88523 0.86518 1.02408 1.22353 0.92224 0.99146 0.98866 0.87342 1.22962 1.03429 0.90060 0.98263 1.31739 1.21678 1.08384 1.08657 0.80723 1.07499 0.78232 0.73501 0.79819 1.30111 1.13566 1.13767 1.22107 1.93544 1.82742 1.39337 1.83326 1.93548 1.61720 1.57463 1.84773 1.22702 1.01523 1.00189 0.90469 1.21119 1.00804 0.89062 0.92398 1.20172 0.93769 0.95899 1.06691 1.25065 1.02793 0.98730 0.91415 1.86578 1.37728 1.94467 1.16597 0.94218 0.77713 0.74083 0.87655 1.21274 0.93885 0.97836 0.93044 1.21461 1.01747 0.90937 1.08997 0.90996 0.90720 0.87507 0.74907 0.91208 0.91843 0.87031 0.87697 0.83355 0.85146 0.82954 0.88644 0.88326 0.82965 0.85103 0.76432 1.20766 1.23537 0.82690 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.24 8.57 -68.73 -0.59 -2.83 16 3 C 0.17 0.63 6.70 22.84 0.15 0.79 16 4 C -0.20 -0.60 5.89 -20.01 -0.12 -0.72 16 5 C 0.56 3.58 7.76 86.70 0.67 4.25 16 6 O -0.57 -8.71 15.16 16.90 0.26 -8.45 16 7 N -0.71 1.04 5.51 -466.28 -2.57 -1.52 16 8 C 0.14 -0.31 5.35 86.38 0.46 0.15 16 9 C -0.11 0.70 3.93 -10.27 -0.04 0.66 16 10 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 11 C -0.11 0.89 7.18 31.21 0.22 1.12 16 12 C -0.59 3.95 3.83 31.22 0.12 4.07 16 13 H 0.18 -1.93 7.69 -2.39 -0.02 -1.95 16 14 S 2.42 -3.11 5.34 -56.49 -0.30 -3.42 16 15 C -0.64 5.39 10.62 113.37 1.20 6.60 16 16 O -0.99 -8.52 18.10 -127.37 -2.31 -10.83 16 17 O -0.98 -5.91 17.19 -127.37 -2.19 -8.10 16 18 C -0.11 0.50 7.26 31.12 0.23 0.73 16 19 C -0.02 0.04 9.09 22.52 0.20 0.25 16 20 C -0.16 0.76 5.38 -19.90 -0.11 0.65 16 21 C -0.07 0.41 2.81 71.23 0.20 0.61 16 22 O -0.55 1.66 12.77 -148.98 -1.90 -0.24 16 23 Si 0.76 -4.49 29.77 68.60 2.04 -2.45 16 24 C -0.04 0.23 8.66 22.30 0.19 0.42 16 25 C -0.21 0.58 9.03 22.34 0.20 0.78 16 26 H 0.07 -0.41 7.66 -2.39 -0.02 -0.43 16 27 H 0.07 -0.45 7.66 -2.39 -0.02 -0.46 16 28 H 0.11 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.41 -2.99 6.50 -92.71 -0.60 -3.59 16 30 H 0.07 -0.10 7.37 -2.39 -0.02 -0.12 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.11 -0.87 7.37 -2.39 -0.02 -0.89 16 33 H 0.10 -1.15 8.10 -2.39 -0.02 -1.17 16 34 H 0.15 -1.78 8.14 -2.39 -0.02 -1.80 16 35 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.15 -1.94 8.14 -2.39 -0.02 -1.96 16 37 H 0.09 -0.46 8.10 -2.39 -0.02 -0.48 16 38 H 0.10 -0.40 8.10 -2.39 -0.02 -0.42 16 39 H 0.15 -1.12 6.40 -2.91 -0.02 -1.13 16 40 H 0.13 -1.03 7.96 -2.39 -0.02 -1.05 16 41 H 0.39 -3.09 8.70 -74.06 -0.64 -3.73 16 42 H -0.28 0.64 7.11 99.48 0.71 1.35 16 43 H -0.31 -0.88 7.11 99.48 0.71 -0.18 16 44 H 0.16 -1.57 4.85 -2.91 -0.01 -1.58 16 45 H 0.16 -1.22 6.30 -2.91 -0.02 -1.23 16 Total: 0.00 -36.56 381.55 -3.02 -39.58 By element: Atomic # 1 Polarization: -23.01 SS G_CDS: -0.17 Total: -23.18 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 4.71 Total: 21.44 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -2.57 Total: -1.52 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -6.73 Total: -30.45 kcal Atomic # 14 Polarization: -4.49 SS G_CDS: 2.04 Total: -2.45 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -0.30 Total: -3.42 kcal Total: -36.56 -3.02 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.311 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds