Wall clock time and date at job start Tue Mar 9 2021 13:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 108.57814 * 2 1 4 4 O 1.42099 * 108.58103 * 228.97068 * 2 1 3 5 5 C 1.81406 * 101.91877 * 114.48295 * 2 1 3 6 6 H 1.08991 * 112.84988 * 311.20275 * 5 2 1 7 7 C 1.54051 * 113.61533 * 82.50688 * 5 2 1 8 8 C 1.53787 * 86.98506 * 139.97786 * 7 5 2 9 9 H 1.08998 * 113.61324 * 219.98214 * 8 7 5 10 10 C 1.52996 * 113.61284 * 89.16050 * 8 7 5 11 11 N 1.46505 * 109.47108 * 85.86506 * 10 8 7 12 12 C 1.34771 * 119.99690 * 179.97438 * 11 10 8 13 13 O 1.21566 * 120.00421 * 359.97438 * 12 11 10 14 14 C 1.47723 * 120.00086 * 180.02562 * 12 11 10 15 15 C 1.39703 * 120.02833 * 179.97438 * 14 12 11 16 16 C 1.37667 * 119.97591 * 179.97438 * 15 14 12 17 17 C 1.39502 * 120.02343 * 359.97438 * 16 15 14 18 18 C 1.48277 * 119.97507 * 180.02562 * 17 16 15 19 19 C 1.39407 * 120.12874 * 180.02562 * 18 17 16 20 20 C 1.37999 * 119.87420 * 180.28110 * 19 18 17 21 21 C 1.38340 * 120.12302 * 359.51100 * 20 19 18 22 22 C 1.50701 * 119.87085 * 180.21417 * 21 20 19 23 23 O 1.42905 * 109.47120 * 245.25708 * 22 21 20 24 24 Si 1.86297 * 109.47012 * 5.25357 * 22 21 20 25 25 C 1.38333 * 120.25744 * 0.46757 * 21 20 19 26 26 C 1.37995 * 120.12904 * 359.79289 * 25 21 20 27 27 C 1.39499 * 120.05045 * 0.29870 * 17 16 15 28 28 C 1.37671 * 120.02476 * 359.44626 * 27 17 16 29 29 C 1.53778 * 113.61158 * 179.97438 * 5 2 1 30 30 H 1.09000 * 109.47571 * 305.51414 * 1 2 3 31 31 H 1.09000 * 109.46980 * 65.51823 * 1 2 3 32 32 H 1.09005 * 109.47153 * 185.50999 * 1 2 3 33 33 H 1.09006 * 113.61524 * 25.47333 * 7 5 2 34 34 H 1.08998 * 113.69742 * 254.49178 * 7 5 2 35 35 H 1.08997 * 109.47141 * 325.86568 * 10 8 7 36 36 H 1.08998 * 109.46958 * 205.86619 * 10 8 7 37 37 H 0.97003 * 119.99866 * 359.97438 * 11 10 8 38 38 H 1.07998 * 120.01515 * 359.97438 * 15 14 12 39 39 H 1.07998 * 119.98613 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.05963 * 359.97438 * 19 18 17 41 41 H 1.07998 * 119.94005 * 179.74938 * 20 19 18 42 42 H 1.08998 * 109.47396 * 125.25104 * 22 21 20 43 43 H 0.96693 * 114.00018 * 180.02562 * 23 22 21 44 44 H 1.48503 * 110.00215 * 178.68467 * 24 22 21 45 45 H 1.48505 * 110.00292 * 299.99909 * 24 22 21 46 46 H 1.08004 * 119.93423 * 179.76522 * 25 21 20 47 47 H 1.08002 * 120.06966 * 179.97438 * 26 25 21 48 48 H 1.07999 * 119.99026 * 179.72506 * 27 17 16 49 49 H 1.07996 * 120.01248 * 180.29614 * 28 27 17 50 50 H 1.08998 * 113.61350 * 105.47898 * 29 5 2 51 51 H 1.08994 * 113.69505 * 334.58013 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6154 6 1 1.6287 -0.2761 2.4297 7 6 2.1360 -2.2752 1.6195 8 6 3.3795 -2.2343 2.5235 9 1 4.1164 -3.0018 2.2871 10 6 3.0502 -2.1663 4.0160 11 7 2.8474 -3.5217 4.5337 12 6 2.5453 -3.7083 5.8338 13 8 2.4415 -2.7519 6.5770 14 6 2.3415 -5.0750 6.3560 15 6 2.0288 -5.2691 7.7037 16 6 1.8385 -6.5432 8.1890 17 6 1.9573 -7.6403 7.3355 18 6 1.7515 -9.0121 7.8594 19 6 1.8699 -10.1107 7.0094 20 6 1.6716 -11.3848 7.5012 21 6 1.3658 -11.5735 8.8371 22 6 1.1552 -12.9677 9.3692 23 8 -0.2025 -13.1171 9.7894 24 14 1.5306 -14.2068 8.0297 25 6 1.2475 -10.4872 9.6853 26 6 1.4384 -9.2082 9.2036 27 6 2.2750 -7.4481 5.9909 28 6 2.4606 -6.1745 5.5022 29 6 3.6945 -0.8653 1.8987 30 1 -0.3634 0.5970 0.8365 31 1 -0.3633 0.4259 -0.9353 32 1 -0.3634 -1.0230 0.0987 33 1 2.3211 -2.7211 0.6422 34 1 1.2522 -2.6820 2.1109 35 1 2.1414 -1.5822 4.1613 36 1 3.8751 -1.6934 4.5488 37 1 2.9306 -4.2849 3.9407 38 1 1.9364 -4.4199 8.3645 39 1 1.5972 -6.6935 9.2310 40 1 2.1115 -9.9647 5.9669 41 1 1.7591 -12.2364 6.8428 42 1 1.8188 -13.1371 10.2171 43 1 -0.4103 -13.9922 10.1443 44 1 1.3573 -15.5865 8.5510 45 1 0.6324 -13.9865 6.8677 46 1 1.0049 -10.6403 10.7266 47 1 1.3453 -8.3607 9.8666 48 1 2.3711 -8.2984 5.3320 49 1 2.7018 -6.0256 4.4601 50 1 4.0684 -0.1343 2.6155 51 1 4.3059 -0.9265 0.9985 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:02 Heat of formation + Delta-G solvation = -52.247145 kcal Electronic energy + Delta-G solvation = -33303.414663 eV Core-core repulsion = 28648.538548 eV Total energy + Delta-G solvation = -4654.876115 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.138 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.49889 -40.79311 -40.08846 -39.09299 -38.01322 -37.65606 -37.06045 -35.63563 -34.10694 -32.58022 -31.64496 -31.10505 -30.43696 -29.16106 -26.96057 -26.81306 -25.34546 -24.62727 -24.04942 -22.55740 -22.19708 -21.30815 -20.51946 -19.75501 -18.96475 -18.57214 -18.43348 -18.01062 -17.23633 -17.13891 -16.91420 -16.91075 -16.59756 -16.36826 -16.14342 -15.65462 -15.60001 -15.39516 -14.97211 -14.94860 -14.82790 -14.75116 -14.29441 -14.14808 -14.06788 -14.00001 -13.94965 -13.89289 -13.68423 -13.60954 -13.30645 -13.22438 -13.18726 -13.06882 -12.92701 -12.70991 -12.50541 -12.07465 -11.97991 -11.90357 -11.63305 -11.59431 -11.58633 -11.19343 -10.89108 -10.76344 -10.46652 -10.17664 -10.04299 -9.94807 -9.05795 -4.92988 -0.92386 -0.67674 0.36985 0.41207 0.50838 1.29530 1.59881 1.79507 1.82466 1.94199 2.03962 2.59343 2.63235 2.89407 3.00273 3.27659 3.37172 3.41685 3.44844 3.53206 3.59028 3.66096 3.76852 3.87145 3.90047 4.01315 4.06744 4.07070 4.15164 4.24754 4.26795 4.30268 4.36916 4.38882 4.44876 4.59070 4.61587 4.65953 4.69181 4.74020 4.87870 4.91799 4.92100 4.93333 4.94986 4.97184 5.09515 5.14412 5.21777 5.22751 5.28863 5.37510 5.42395 5.51402 5.66667 5.81466 5.93439 6.45651 6.56656 7.12725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.416 3.584 3 O -0.993 6.993 4 O -0.978 6.978 5 C -0.593 4.593 6 H 0.175 0.825 7 C -0.109 4.109 8 C -0.105 4.105 9 H 0.112 0.888 10 C 0.134 3.866 11 N -0.709 5.709 12 C 0.556 3.444 13 O -0.583 6.583 14 C -0.152 4.152 15 C -0.072 4.072 16 C -0.126 4.126 17 C -0.022 4.022 18 C -0.061 4.061 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.082 4.082 22 C -0.090 4.090 23 O -0.559 6.559 24 Si 0.766 3.234 25 C -0.105 4.105 26 C -0.114 4.114 27 C -0.118 4.118 28 C -0.072 4.072 29 C -0.112 4.112 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.395 0.605 44 H -0.289 1.289 45 H -0.296 1.296 46 H 0.130 0.870 47 H 0.139 0.861 48 H 0.161 0.839 49 H 0.162 0.838 50 H 0.094 0.906 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 -7.113 -0.384 7.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.605 3.395 3 O -0.991 6.991 4 O -0.975 6.975 5 C -0.705 4.705 6 H 0.193 0.807 7 C -0.147 4.147 8 C -0.125 4.125 9 H 0.130 0.870 10 C 0.010 3.990 11 N -0.362 5.362 12 C 0.345 3.655 13 O -0.464 6.464 14 C -0.155 4.155 15 C -0.091 4.091 16 C -0.143 4.143 17 C -0.023 4.023 18 C -0.061 4.061 19 C -0.118 4.118 20 C -0.140 4.140 21 C -0.082 4.082 22 C -0.198 4.198 23 O -0.369 6.369 24 Si 0.671 3.329 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.090 4.090 29 C -0.151 4.151 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.172 0.828 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.112 0.888 43 H 0.245 0.755 44 H -0.216 1.216 45 H -0.223 1.223 46 H 0.148 0.852 47 H 0.157 0.843 48 H 0.178 0.822 49 H 0.180 0.820 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.637 -6.116 -1.272 6.280 hybrid contribution -1.576 -0.460 1.440 2.184 sum -0.939 -6.576 0.168 6.645 Atomic orbital electron populations 1.30116 1.22812 1.13757 1.12908 1.07607 0.79746 0.74121 0.77994 1.93546 1.80989 1.37010 1.87517 1.93548 1.80828 1.67433 1.55666 1.31732 1.07619 1.09441 1.21669 0.80713 1.22991 1.00310 0.88969 1.02480 1.22343 0.99184 0.98708 0.92258 0.87009 1.21206 1.01884 0.83284 0.92605 1.45741 1.70832 1.10320 1.09275 1.18514 0.75928 0.88762 0.82324 1.90782 1.53197 1.43926 1.58503 1.19988 1.07345 0.92731 0.95421 1.21235 0.95553 0.97612 0.94656 1.21355 1.00829 0.91263 1.00885 1.19135 0.97118 0.91745 0.94261 1.18950 1.01055 0.92166 0.93907 1.21483 0.98486 0.90923 1.00919 1.21168 1.00310 0.98141 0.94364 1.19617 1.00020 0.94339 0.94195 1.25075 0.85945 1.00778 1.08002 1.86547 1.27227 1.39069 1.84077 0.94126 0.89241 0.73971 0.75535 1.21093 0.98779 0.91902 1.00481 1.21510 0.98769 0.97662 0.95182 1.21507 0.99332 0.98226 0.94522 1.21507 0.96197 0.90995 1.00342 1.22712 0.90986 0.98606 1.02804 0.83338 0.85174 0.82816 0.86902 0.87435 0.91017 0.91672 0.74445 0.85619 0.84045 0.82525 0.83916 0.88820 0.75503 1.21645 1.22324 0.85244 0.84323 0.82195 0.82027 0.88705 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.95 10.62 113.37 1.20 7.16 16 2 S 2.42 -5.12 5.34 -56.49 -0.30 -5.42 16 3 O -0.99 -7.94 18.10 -127.37 -2.31 -10.24 16 4 O -0.98 -4.93 17.19 -127.37 -2.19 -7.12 16 5 C -0.59 4.77 3.83 31.21 0.12 4.89 16 6 H 0.18 -2.17 7.70 -2.39 -0.02 -2.19 16 7 C -0.11 1.13 7.18 31.21 0.22 1.35 16 8 C -0.11 0.93 3.93 -10.28 -0.04 0.89 16 9 H 0.11 -1.27 8.14 -2.39 -0.02 -1.29 16 10 C 0.13 -0.63 5.35 86.38 0.46 -0.16 16 11 N -0.71 3.22 5.51 -466.10 -2.57 0.65 16 12 C 0.56 1.91 7.77 86.75 0.67 2.58 16 13 O -0.58 -7.31 16.33 -3.92 -0.06 -7.37 16 14 C -0.15 -0.13 5.88 -20.06 -0.12 -0.25 16 15 C -0.07 -0.21 9.58 22.49 0.22 0.01 16 16 C -0.13 -0.06 9.41 22.44 0.21 0.15 16 17 C -0.02 0.02 5.88 -20.00 -0.12 -0.10 16 18 C -0.06 0.02 5.88 -20.04 -0.12 -0.10 16 19 C -0.10 0.26 9.43 22.49 0.21 0.47 16 20 C -0.12 0.16 8.65 22.24 0.19 0.35 16 21 C -0.08 -0.08 5.39 -19.82 -0.11 -0.18 16 22 C -0.09 0.14 2.79 71.24 0.20 0.34 16 23 O -0.56 -0.89 12.81 -148.98 -1.91 -2.80 16 24 Si 0.77 -2.55 29.84 68.60 2.05 -0.50 16 25 C -0.10 -0.15 9.67 22.23 0.21 0.06 16 26 C -0.11 -0.05 9.43 22.49 0.21 0.16 16 27 C -0.12 0.58 9.41 22.44 0.21 0.79 16 28 C -0.07 0.39 9.52 22.49 0.21 0.61 16 29 C -0.11 0.68 7.26 31.11 0.23 0.90 16 30 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 31 H 0.13 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.15 -2.14 8.14 -2.39 -0.02 -2.16 16 33 H 0.11 -1.13 7.37 -2.38 -0.02 -1.15 16 34 H 0.11 -1.45 8.10 -2.39 -0.02 -1.47 16 35 H 0.07 -0.27 7.37 -2.39 -0.02 -0.29 16 36 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.42 -4.68 6.49 -92.71 -0.60 -5.28 16 38 H 0.13 0.60 7.64 -2.91 -0.02 0.58 16 39 H 0.14 -0.33 6.19 -2.91 -0.02 -0.35 16 40 H 0.16 -1.34 6.19 -2.91 -0.02 -1.36 16 41 H 0.14 -0.69 4.85 -2.91 -0.01 -0.70 16 42 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 43 H 0.39 -2.49 8.74 -74.06 -0.65 -3.14 16 44 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 45 H -0.30 -1.00 7.04 99.48 0.70 -0.30 16 46 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 47 H 0.14 -0.35 6.19 -2.91 -0.02 -0.37 16 48 H 0.16 -1.69 6.19 -2.91 -0.02 -1.71 16 49 H 0.16 -2.11 6.39 -2.91 -0.02 -2.13 16 50 H 0.09 -0.58 8.10 -2.39 -0.02 -0.60 16 51 H 0.10 -0.53 8.10 -2.39 -0.02 -0.55 16 Total: 0.00 -37.45 428.44 -3.22 -40.67 By element: Atomic # 1 Polarization: -27.55 SS G_CDS: -0.22 Total: -27.77 kcal Atomic # 6 Polarization: 15.62 SS G_CDS: 4.29 Total: 19.91 kcal Atomic # 7 Polarization: 3.22 SS G_CDS: -2.57 Total: 0.65 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -6.47 Total: -27.54 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.05 Total: -0.50 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -0.30 Total: -5.42 kcal Total: -37.45 -3.22 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.578 kcal (2) G-P(sol) polarization free energy of solvation -37.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds