Wall clock time and date at job start Tue Mar 9 2021 13:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42102 * 108.57825 * 2 1 4 4 O 1.42100 * 108.58152 * 228.96792 * 2 1 3 5 5 C 1.81406 * 101.91940 * 114.48248 * 2 1 3 6 6 H 1.09007 * 112.84654 * 53.80650 * 5 2 1 7 7 C 1.53778 * 113.61452 * 185.00152 * 5 2 1 8 8 C 1.53774 * 87.08261 * 139.98360 * 7 5 2 9 9 H 1.08999 * 113.61920 * 219.93489 * 8 7 5 10 10 C 1.53002 * 113.61618 * 89.11366 * 8 7 5 11 11 N 1.46506 * 109.47035 * 176.52887 * 10 8 7 12 12 C 1.34777 * 119.99873 * 179.97438 * 11 10 8 13 13 O 1.21579 * 119.99978 * 0.02562 * 12 11 10 14 14 C 1.47646 * 120.00084 * 179.97438 * 12 11 10 15 15 C 1.40173 * 119.97418 * 359.73014 * 14 12 11 16 16 C 1.36346 * 120.67049 * 179.78950 * 15 14 12 17 17 C 1.39335 * 120.23518 * 0.44428 * 16 15 14 18 18 N 1.37399 * 133.25066 * 179.79191 * 17 16 15 19 19 C 1.36860 * 109.98431 * 180.02562 * 18 17 16 20 20 C 1.34195 * 109.96577 * 359.97438 * 19 18 17 21 21 C 1.50703 * 126.54046 * 179.97438 * 20 19 18 22 22 O 1.42894 * 109.47131 * 105.00514 * 21 20 19 23 23 Si 1.86296 * 109.47166 * 344.99769 * 21 20 19 24 24 C 1.40907 * 119.64193 * 359.81476 * 17 16 15 25 25 C 1.39184 * 119.97420 * 180.02562 * 14 12 11 26 26 C 1.53784 * 87.17212 * 334.52613 * 8 7 5 27 27 H 1.08994 * 109.47488 * 305.51459 * 1 2 3 28 28 H 1.08998 * 109.46705 * 65.51691 * 1 2 3 29 29 H 1.09003 * 109.46942 * 185.51680 * 1 2 3 30 30 H 1.09000 * 113.61674 * 25.42969 * 7 5 2 31 31 H 1.09011 * 113.69103 * 254.54204 * 7 5 2 32 32 H 1.09004 * 109.46930 * 56.53117 * 10 8 7 33 33 H 1.09000 * 109.47312 * 296.53061 * 10 8 7 34 34 H 0.96999 * 120.00080 * 0.02562 * 11 10 8 35 35 H 1.08003 * 119.66091 * 359.97438 * 15 14 12 36 36 H 1.08002 * 119.88378 * 180.25833 * 16 15 14 37 37 H 0.97000 * 125.01258 * 0.02562 * 18 17 16 38 38 H 1.08002 * 125.02056 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.46702 * 225.00189 * 21 20 19 40 40 H 0.96699 * 114.00076 * 179.97438 * 22 21 20 41 41 H 1.48496 * 110.00495 * 298.68266 * 23 21 20 42 42 H 1.48505 * 109.99713 * 60.00501 * 23 21 20 43 43 H 1.08003 * 120.30737 * 359.97438 * 25 14 12 44 44 H 1.09001 * 113.61572 * 140.02528 * 26 8 7 45 45 H 1.09004 * 113.61379 * 270.92469 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0160 5 6 2.1887 -0.7356 1.6154 6 1 1.6957 -1.6958 1.7678 7 6 3.6893 -0.7534 1.9510 8 6 3.2920 -0.3791 3.3886 9 1 3.9584 0.3496 3.8501 10 6 3.0230 -1.5895 4.2850 11 7 2.7349 -1.1338 5.6473 12 6 2.4653 -2.0320 6.6154 13 8 2.4617 -3.2202 6.3583 14 6 2.1755 -1.5728 7.9884 15 6 2.1865 -0.2031 8.2857 16 6 1.9167 0.2369 9.5478 17 6 1.6348 -0.6746 10.5632 18 7 1.3367 -0.5354 11.8972 19 6 1.1410 -1.7658 12.4637 20 6 1.3005 -2.7261 11.5400 21 6 1.1713 -4.2116 11.7585 22 8 -0.0627 -4.6692 11.2020 23 14 1.2017 -4.5755 13.5853 24 6 1.6260 -2.0546 10.2784 25 6 1.8977 -2.5008 8.9878 26 6 2.0173 0.2421 2.7934 27 1 -0.3634 0.5969 0.8364 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0988 30 1 4.2603 0.0217 1.4398 31 1 4.1452 -1.7400 1.8668 32 1 3.9007 -2.2357 4.2960 33 1 2.1680 -2.1446 3.8991 34 1 2.7374 -0.1858 5.8523 35 1 2.4079 0.5113 7.5065 36 1 1.9245 1.2954 9.7618 37 1 1.2741 0.3103 12.3682 38 1 0.8946 -1.9385 13.5009 39 1 2.0014 -4.7239 11.2720 40 1 -0.2129 -5.6188 11.3060 41 1 2.4931 -4.1332 14.1699 42 1 0.0748 -3.8827 14.2600 43 1 1.8925 -3.5575 8.7643 44 1 1.1229 0.0582 3.3888 45 1 2.1320 1.2890 2.5123 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:23 Heat of formation + Delta-G solvation = -48.975689 kcal Electronic energy + Delta-G solvation = -29598.171422 eV Core-core repulsion = 25290.001157 eV Total energy + Delta-G solvation = -4308.170265 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.55921 -41.10995 -39.97184 -38.01148 -37.89384 -37.46926 -37.05632 -35.56855 -33.45344 -31.29765 -30.73113 -30.42320 -28.96644 -26.82211 -26.47484 -25.64357 -24.15785 -23.56303 -21.65986 -20.82831 -20.30200 -19.67408 -19.14511 -18.46399 -18.37293 -18.29667 -17.45869 -17.13430 -17.03753 -16.89685 -16.35913 -16.00980 -15.76598 -15.57957 -15.31310 -15.09385 -14.92439 -14.83140 -14.75300 -14.23980 -14.11446 -13.96178 -13.91319 -13.84055 -13.60189 -13.57975 -13.23833 -13.20374 -13.06208 -12.79627 -12.73557 -12.59457 -12.07726 -11.97132 -11.92045 -11.61500 -11.57860 -11.18918 -10.89565 -10.88338 -10.20559 -10.19595 -9.42794 -8.92363 -4.93067 -0.91688 -0.21931 0.11506 1.33152 1.34583 1.70904 1.80928 1.83084 1.94192 1.97262 2.06609 2.63503 2.83131 2.91873 3.28510 3.41491 3.46192 3.52645 3.59491 3.62649 3.66988 3.79142 3.99262 4.07731 4.08990 4.15633 4.19625 4.25772 4.34293 4.39604 4.45843 4.49955 4.59688 4.62961 4.71419 4.76824 4.89617 4.93179 4.94231 4.95401 4.98128 5.19448 5.23751 5.27792 5.36003 5.42600 5.47503 5.88216 6.42447 6.49502 6.94965 7.16747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.418 3.582 3 O -0.978 6.978 4 O -0.994 6.994 5 C -0.594 4.594 6 H 0.174 0.826 7 C -0.112 4.112 8 C -0.105 4.105 9 H 0.112 0.888 10 C 0.134 3.866 11 N -0.709 5.709 12 C 0.562 3.438 13 O -0.586 6.586 14 C -0.177 4.177 15 C -0.061 4.061 16 C -0.127 4.127 17 C 0.110 3.890 18 N -0.574 5.574 19 C 0.056 3.944 20 C -0.180 4.180 21 C -0.058 4.058 22 O -0.569 6.569 23 Si 0.789 3.211 24 C -0.131 4.131 25 C -0.015 4.015 26 C -0.109 4.109 27 H 0.153 0.847 28 H 0.130 0.870 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.417 0.583 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.437 0.563 38 H 0.187 0.813 39 H 0.070 0.930 40 H 0.399 0.601 41 H -0.288 1.288 42 H -0.281 1.281 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 3.097 6.993 8.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.975 6.975 4 O -0.991 6.991 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.151 4.151 8 C -0.124 4.124 9 H 0.130 0.870 10 C 0.011 3.989 11 N -0.362 5.362 12 C 0.351 3.649 13 O -0.468 6.468 14 C -0.181 4.181 15 C -0.080 4.080 16 C -0.147 4.147 17 C 0.000 4.000 18 N -0.177 5.177 19 C -0.071 4.071 20 C -0.187 4.187 21 C -0.167 4.167 22 O -0.378 6.378 23 Si 0.691 3.309 24 C -0.135 4.135 25 C -0.035 4.035 26 C -0.147 4.147 27 H 0.172 0.828 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.255 0.745 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.278 0.722 38 H 0.203 0.797 39 H 0.088 0.912 40 H 0.249 0.751 41 H -0.214 1.214 42 H -0.208 1.208 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.916 3.648 6.813 7.962 hybrid contribution -0.382 0.403 0.140 0.573 sum -2.299 4.051 6.952 8.369 Atomic orbital electron populations 1.30102 1.22767 1.13567 1.13077 1.07562 0.79737 0.74469 0.77513 1.93547 1.80851 1.35960 1.87148 1.93542 1.81005 1.67802 1.56789 1.31732 1.07563 1.13289 1.17921 0.80846 1.22724 0.91185 1.04699 0.96497 1.22339 0.98785 0.97136 0.94186 0.87018 1.21199 1.01436 0.96039 0.80247 1.45688 1.70995 1.10550 1.08928 1.18346 0.75833 0.85372 0.85341 1.90773 1.54060 1.18370 1.83554 1.19604 1.10734 0.94913 0.92849 1.20948 0.96618 0.93419 0.97056 1.20089 1.04297 0.99720 0.90623 1.18741 1.00883 0.94721 0.85621 1.41689 1.60118 1.08809 1.07115 1.21870 1.02351 0.83757 0.99120 1.20107 1.11509 0.94583 0.92479 1.24395 0.89055 0.90695 1.12564 1.86472 1.37805 1.30691 1.82881 0.93767 0.76804 0.89700 0.70585 1.19178 1.07447 0.93099 0.93825 1.20614 0.93013 0.99555 0.90338 1.22987 1.00113 0.98159 0.93429 0.82825 0.85143 0.83381 0.88209 0.88792 0.91786 0.91128 0.74474 0.81528 0.81995 0.72159 0.79671 0.91155 0.75064 1.21439 1.20785 0.86619 0.87438 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.66 10.62 113.37 1.20 6.87 16 2 S 2.42 -3.93 5.30 -56.49 -0.30 -4.23 16 3 O -0.98 -5.40 17.34 -127.37 -2.21 -7.60 16 4 O -0.99 -8.49 18.10 -127.37 -2.31 -10.80 16 5 C -0.59 4.31 3.82 31.21 0.12 4.43 16 6 H 0.17 -1.95 7.70 -2.38 -0.02 -1.97 16 7 C -0.11 0.59 7.26 31.12 0.23 0.81 16 8 C -0.10 0.83 3.93 -10.27 -0.04 0.79 16 9 H 0.11 -1.17 8.14 -2.39 -0.02 -1.18 16 10 C 0.13 -0.43 5.35 86.38 0.46 0.03 16 11 N -0.71 1.87 5.51 -466.14 -2.57 -0.69 16 12 C 0.56 3.53 7.76 86.73 0.67 4.20 16 13 O -0.59 -9.04 16.33 -3.96 -0.06 -9.11 16 14 C -0.18 -0.85 5.87 -20.10 -0.12 -0.97 16 15 C -0.06 0.16 9.46 22.30 0.21 0.37 16 16 C -0.13 0.33 10.00 22.09 0.22 0.55 16 17 C 0.11 0.30 7.27 39.19 0.28 0.58 16 18 N -0.57 0.62 6.05 -187.48 -1.13 -0.51 16 19 C 0.06 0.11 10.43 82.99 0.87 0.98 16 20 C -0.18 -1.16 5.61 -18.61 -0.10 -1.26 16 21 C -0.06 -0.14 3.05 71.24 0.22 0.08 16 22 O -0.57 -2.00 12.86 -148.98 -1.92 -3.92 16 23 Si 0.79 -2.27 30.80 68.60 2.11 -0.16 16 24 C -0.13 -1.07 6.34 -20.21 -0.13 -1.20 16 25 C -0.02 -0.15 9.64 22.74 0.22 0.07 16 26 C -0.11 1.06 7.19 31.21 0.22 1.29 16 27 H 0.15 -2.07 8.14 -2.39 -0.02 -2.09 16 28 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 29 H 0.15 -1.81 8.14 -2.39 -0.02 -1.83 16 30 H 0.10 -0.47 8.10 -2.39 -0.02 -0.49 16 31 H 0.09 -0.49 8.10 -2.38 -0.02 -0.51 16 32 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 33 H 0.07 -0.15 7.37 -2.39 -0.02 -0.17 16 34 H 0.42 -3.99 6.47 -92.71 -0.60 -4.59 16 35 H 0.17 -1.86 6.36 -2.91 -0.02 -1.88 16 36 H 0.16 -1.53 8.06 -2.91 -0.02 -1.56 16 37 H 0.44 -3.68 8.96 -92.71 -0.83 -4.51 16 38 H 0.19 -0.43 6.30 -2.91 -0.02 -0.45 16 39 H 0.07 0.11 7.96 -2.38 -0.02 0.09 16 40 H 0.40 -2.83 8.74 -74.06 -0.65 -3.48 16 41 H -0.29 -0.64 7.11 99.48 0.71 0.06 16 42 H -0.28 -0.46 7.04 99.48 0.70 0.24 16 43 H 0.12 1.46 7.64 -2.91 -0.02 1.44 16 44 H 0.11 -1.37 8.10 -2.39 -0.02 -1.39 16 45 H 0.11 -1.14 7.49 -2.38 -0.02 -1.16 16 Total: 0.00 -41.09 388.13 -4.83 -45.92 By element: Atomic # 1 Polarization: -25.54 SS G_CDS: -0.98 Total: -26.53 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 4.54 Total: 17.62 kcal Atomic # 7 Polarization: 2.50 SS G_CDS: -3.70 Total: -1.20 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -6.49 Total: -31.42 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.11 Total: -0.16 kcal Atomic # 16 Polarization: -3.93 SS G_CDS: -0.30 Total: -4.23 kcal Total: -41.09 -4.83 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.059 kcal (2) G-P(sol) polarization free energy of solvation -41.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds