Wall clock time and date at job start Tue Mar 9 2021 13:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 108.57966 * 2 1 4 4 O 1.42101 * 108.57490 * 228.97646 * 2 1 3 5 5 C 1.81397 * 101.92320 * 114.49050 * 2 1 3 6 6 H 1.09007 * 112.84921 * 53.80170 * 5 2 1 7 7 C 1.53776 * 113.61552 * 184.99733 * 5 2 1 8 8 C 1.53776 * 87.08223 * 140.06273 * 7 5 2 9 9 H 1.08996 * 113.61706 * 219.93270 * 8 7 5 10 10 C 1.53000 * 113.61346 * 89.11683 * 8 7 5 11 11 N 1.46499 * 109.47645 * 176.53133 * 10 8 7 12 12 C 1.34769 * 120.00587 * 179.97438 * 11 10 8 13 13 O 1.21517 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.48173 * 120.00220 * 179.97438 * 12 11 10 15 15 N 1.32711 * 119.72077 * 359.97438 * 14 12 11 16 16 C 1.31529 * 121.64262 * 179.72630 * 15 14 12 17 17 C 1.38560 * 120.89586 * 0.58034 * 16 15 14 18 18 C 1.50707 * 120.31845 * 179.70642 * 17 16 15 19 19 O 1.42903 * 109.46442 * 244.72281 * 18 17 16 20 20 Si 1.86293 * 109.47256 * 4.71847 * 18 17 16 21 21 C 1.38628 * 119.35735 * 359.42780 * 17 16 15 22 22 C 1.38584 * 118.48592 * 0.27743 * 21 17 16 23 23 C 1.53784 * 87.17262 * 334.52915 * 8 7 5 24 24 H 1.08996 * 109.46747 * 305.51329 * 1 2 3 25 25 H 1.09004 * 109.47312 * 65.50588 * 1 2 3 26 26 H 1.09002 * 109.47379 * 185.51229 * 1 2 3 27 27 H 1.09000 * 113.61103 * 25.51347 * 7 5 2 28 28 H 1.09005 * 113.61656 * 254.61519 * 7 5 2 29 29 H 1.09004 * 109.47065 * 56.52649 * 10 8 7 30 30 H 1.09009 * 109.47081 * 296.52963 * 10 8 7 31 31 H 0.97009 * 119.99288 * 359.97438 * 11 10 8 32 32 H 1.07993 * 119.55247 * 180.30865 * 16 15 14 33 33 H 1.08999 * 109.47345 * 124.72351 * 18 17 16 34 34 H 0.96700 * 114.00311 * 60.00230 * 19 18 17 35 35 H 1.48501 * 109.99918 * 58.68485 * 20 18 17 36 36 H 1.48506 * 109.99973 * 180.02562 * 20 18 17 37 37 H 1.07994 * 120.75485 * 180.25276 * 21 17 16 38 38 H 1.08001 * 120.47190 * 179.97438 * 22 21 17 39 39 H 1.09002 * 113.61456 * 140.02169 * 23 8 7 40 40 H 1.08994 * 113.60973 * 270.92043 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.6958 -1.6959 1.7675 7 6 3.6894 -0.7537 1.9506 8 6 3.2921 -0.3816 3.3888 9 1 3.9583 0.3465 3.8514 10 6 3.0235 -1.5934 4.2834 11 7 2.7353 -1.1401 5.6464 12 6 2.4661 -2.0397 6.6131 13 8 2.4629 -3.2270 6.3544 14 6 2.1752 -1.5811 7.9917 15 7 2.1816 -0.2832 8.2685 16 6 1.9235 0.1658 9.4775 17 6 1.6450 -0.7076 10.5165 18 6 1.3575 -0.1792 11.8983 19 8 2.3837 -0.6086 12.7953 20 14 1.3107 1.6826 11.8539 21 6 1.6276 -2.0719 10.2712 22 6 1.8974 -2.5160 8.9865 23 6 2.0172 0.2401 2.7947 24 1 -0.3633 0.5970 0.8365 25 1 -0.3634 0.4261 -0.9352 26 1 -0.3634 -1.0229 0.0987 27 1 4.2601 0.0224 1.4406 28 1 4.1443 -1.7405 1.8647 29 1 3.9015 -2.2394 4.2934 30 1 2.1686 -2.1482 3.8967 31 1 2.7383 -0.1922 5.8530 32 1 1.9331 1.2295 9.6640 33 1 0.3944 -0.5589 12.2394 34 1 3.2698 -0.3066 12.5529 35 1 0.2689 2.1418 10.9004 36 1 1.0286 2.2161 13.2108 37 1 1.4092 -2.7727 11.0633 38 1 1.8928 -3.5719 8.7597 39 1 1.1229 0.0550 3.3898 40 1 2.1315 1.2873 2.5152 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:29 Heat of formation + Delta-G solvation = -71.750504 kcal Electronic energy + Delta-G solvation = -24900.562640 eV Core-core repulsion = 21003.394685 eV Total energy + Delta-G solvation = -3897.167955 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90022 -40.73056 -39.75990 -38.00084 -37.85692 -37.05098 -35.63873 -33.78613 -32.98207 -30.46557 -29.61452 -27.54823 -26.81638 -25.30619 -24.97510 -23.57399 -21.87182 -20.63717 -19.75232 -18.94821 -18.61579 -18.39991 -17.71463 -17.13204 -16.93013 -16.74627 -16.62110 -16.51348 -16.30400 -15.95806 -15.71256 -15.13013 -15.00824 -14.42503 -14.34193 -14.27608 -14.10312 -13.94926 -13.86871 -13.60705 -13.55951 -13.25340 -13.19486 -13.05655 -12.74064 -12.54000 -12.18167 -11.96839 -11.65041 -11.62333 -11.46922 -11.05824 -10.94086 -10.67975 -10.56497 -10.37402 -10.09061 -4.99548 -0.91200 -0.60078 0.07585 1.25770 1.53192 1.65228 1.83208 1.92888 1.99252 2.63722 2.66512 2.90404 2.95488 3.28636 3.42040 3.43763 3.50390 3.53163 3.60916 3.72288 3.80482 3.94861 4.07771 4.13360 4.15173 4.25854 4.38892 4.41256 4.57792 4.59053 4.62584 4.71459 4.85217 4.91671 4.93082 4.95143 4.97702 4.99368 5.21869 5.33812 5.38747 6.26412 6.60701 6.72132 7.03300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.420 3.580 3 O -0.979 6.979 4 O -0.993 6.993 5 C -0.593 4.593 6 H 0.176 0.824 7 C -0.110 4.110 8 C -0.106 4.106 9 H 0.108 0.892 10 C 0.132 3.868 11 N -0.696 5.696 12 C 0.568 3.432 13 O -0.568 6.568 14 C 0.065 3.935 15 N -0.457 5.457 16 C 0.103 3.897 17 C -0.143 4.143 18 C -0.070 4.070 19 O -0.551 6.551 20 Si 0.774 3.226 21 C -0.055 4.055 22 C -0.117 4.117 23 C -0.109 4.109 24 H 0.152 0.848 25 H 0.130 0.870 26 H 0.148 0.852 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.422 0.578 32 H 0.189 0.811 33 H 0.118 0.882 34 H 0.397 0.603 35 H -0.278 1.278 36 H -0.298 1.298 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.105 0.895 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 3.338 4.610 5.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.609 3.391 3 O -0.976 6.976 4 O -0.990 6.990 5 C -0.704 4.704 6 H 0.194 0.806 7 C -0.149 4.149 8 C -0.126 4.126 9 H 0.126 0.874 10 C 0.009 3.991 11 N -0.348 5.348 12 C 0.353 3.647 13 O -0.447 6.447 14 C -0.073 4.073 15 N -0.168 5.168 16 C -0.056 4.056 17 C -0.146 4.146 18 C -0.180 4.180 19 O -0.359 6.359 20 Si 0.680 3.320 21 C -0.080 4.080 22 C -0.138 4.138 23 C -0.147 4.147 24 H 0.171 0.829 25 H 0.148 0.852 26 H 0.167 0.833 27 H 0.117 0.883 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.260 0.740 32 H 0.206 0.794 33 H 0.135 0.865 34 H 0.248 0.752 35 H -0.204 1.204 36 H -0.226 1.226 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.539 3.809 3.388 5.325 hybrid contribution -1.072 -1.282 1.080 1.990 sum -2.611 2.526 4.468 5.759 Atomic orbital electron populations 1.30106 1.22851 1.13563 1.13015 1.07522 0.79684 0.74443 0.77487 1.93548 1.80843 1.36052 1.87151 1.93543 1.80985 1.67794 1.56722 1.31736 1.07592 1.13284 1.17807 0.80626 1.22717 0.91169 1.04800 0.96208 1.22341 0.98774 0.97172 0.94333 0.87389 1.21294 1.01832 0.96107 0.79884 1.45744 1.69041 1.11110 1.08887 1.18052 0.76775 0.85379 0.84467 1.90803 1.53657 1.17572 1.82663 1.21077 1.01546 0.90222 0.94418 1.67507 1.11775 1.14610 1.22921 1.23015 0.94746 1.00884 0.86978 1.21767 0.99770 0.94988 0.98030 1.25176 0.94411 1.12388 0.86064 1.86515 1.20112 1.78998 1.50323 0.93796 0.88077 0.72204 0.77966 1.21729 0.94070 0.95922 0.96307 1.22275 0.96688 1.01908 0.92919 1.22962 1.00054 0.98207 0.93493 0.82939 0.85183 0.83314 0.88264 0.88499 0.91165 0.90604 0.74014 0.79448 0.86461 0.75219 1.20409 1.22590 0.82402 0.83456 0.87669 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.85 10.62 113.37 1.20 7.06 16 2 S 2.42 -4.78 5.30 -56.49 -0.30 -5.08 16 3 O -0.98 -5.39 17.35 -127.37 -2.21 -7.60 16 4 O -0.99 -7.94 18.10 -127.37 -2.30 -10.25 16 5 C -0.59 4.57 3.81 31.21 0.12 4.69 16 6 H 0.18 -2.15 7.69 -2.38 -0.02 -2.17 16 7 C -0.11 0.63 7.26 31.12 0.23 0.85 16 8 C -0.11 0.81 3.94 -10.27 -0.04 0.77 16 9 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 10 C 0.13 -0.53 5.35 86.38 0.46 -0.07 16 11 N -0.70 1.47 5.54 -465.65 -2.58 -1.11 16 12 C 0.57 2.32 7.81 86.88 0.68 3.00 16 13 O -0.57 -6.21 16.32 -3.77 -0.06 -6.27 16 14 C 0.06 0.12 6.75 41.91 0.28 0.41 16 15 N -0.46 0.49 9.54 -184.91 -1.76 -1.28 16 16 C 0.10 -0.49 9.84 84.81 0.83 0.34 16 17 C -0.14 0.66 5.37 -19.69 -0.11 0.55 16 18 C -0.07 0.42 2.82 71.24 0.20 0.62 16 19 O -0.55 2.60 12.84 -148.98 -1.91 0.69 16 20 Si 0.77 -5.66 29.83 68.60 2.05 -3.61 16 21 C -0.05 0.15 9.83 22.45 0.22 0.37 16 22 C -0.12 -0.09 9.63 22.61 0.22 0.13 16 23 C -0.11 1.01 7.19 31.21 0.22 1.24 16 24 H 0.15 -2.06 8.14 -2.39 -0.02 -2.08 16 25 H 0.13 -1.08 8.14 -2.39 -0.02 -1.10 16 26 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 27 H 0.10 -0.49 8.10 -2.39 -0.02 -0.51 16 28 H 0.10 -0.61 8.10 -2.38 -0.02 -0.63 16 29 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.08 -0.29 7.37 -2.38 -0.02 -0.31 16 31 H 0.42 -2.36 7.80 -92.70 -0.72 -3.09 16 32 H 0.19 -1.98 4.92 -2.91 -0.01 -1.99 16 33 H 0.12 -0.63 7.96 -2.39 -0.02 -0.65 16 34 H 0.40 -5.01 8.70 -74.06 -0.64 -5.65 16 35 H -0.28 0.82 7.11 99.48 0.71 1.53 16 36 H -0.30 -0.33 7.11 99.48 0.71 0.38 16 37 H 0.16 -0.83 8.06 -2.91 -0.02 -0.86 16 38 H 0.15 0.17 7.64 -2.91 -0.02 0.15 16 39 H 0.10 -1.27 8.10 -2.39 -0.02 -1.29 16 40 H 0.11 -1.01 7.50 -2.39 -0.02 -1.03 16 Total: 0.00 -32.11 351.92 -4.81 -36.92 By element: Atomic # 1 Polarization: -22.13 SS G_CDS: -0.24 Total: -22.37 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 4.52 Total: 19.96 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -4.35 Total: -2.39 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -6.49 Total: -23.43 kcal Atomic # 14 Polarization: -5.66 SS G_CDS: 2.05 Total: -3.61 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -0.30 Total: -5.08 kcal Total: -32.11 -4.81 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.834 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds