Wall clock time and date at job start Tue Mar 9 2021 13:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34660 * 124.85138 * 2 1 4 4 C 1.36773 * 108.39440 * 179.97438 * 3 2 1 5 5 C 1.47263 * 126.94056 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00200 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00095 * 0.02620 * 5 4 3 8 8 C 1.46503 * 120.00417 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47522 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.84989 * 43.80232 * 9 8 7 11 11 C 1.53772 * 113.61534 * 175.00291 * 9 8 7 12 12 C 1.53781 * 87.08298 * 89.19944 * 11 9 8 13 13 H 1.09000 * 113.61509 * 270.80067 * 12 11 9 14 14 S 1.81399 * 113.61454 * 139.98177 * 12 11 9 15 15 C 1.81397 * 101.92362 * 185.00183 * 14 12 11 16 16 O 1.42107 * 108.57811 * 299.48764 * 14 12 11 17 17 O 1.42101 * 108.57883 * 70.51113 * 14 12 11 18 18 C 1.53777 * 87.08144 * 25.43190 * 12 11 9 19 19 C 1.46688 * 106.11584 * 0.26614 * 4 3 2 20 20 C 1.34486 * 106.33056 * 359.56824 * 19 4 3 21 21 C 1.50700 * 125.56680 * 180.14316 * 20 19 4 22 22 O 1.42903 * 109.47067 * 210.33484 * 21 20 19 23 23 Si 1.86295 * 109.47429 * 330.33956 * 21 20 19 24 24 H 1.09006 * 109.47064 * 90.01562 * 1 2 3 25 25 H 1.08997 * 109.47640 * 210.01779 * 1 2 3 26 26 H 1.09001 * 109.47428 * 330.02349 * 1 2 3 27 27 H 1.07997 * 125.80359 * 359.96980 * 3 2 1 28 28 H 0.97008 * 119.99928 * 0.02562 * 7 5 4 29 29 H 1.09006 * 109.46578 * 60.00129 * 8 7 5 30 30 H 1.09001 * 109.47084 * 300.00124 * 8 7 5 31 31 H 1.08996 * 113.61775 * 334.65021 * 11 9 8 32 32 H 1.09000 * 113.69530 * 203.75863 * 11 9 8 33 33 H 1.08997 * 109.47291 * 59.99557 * 15 14 12 34 34 H 1.09002 * 109.47649 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46904 * 300.00230 * 15 14 12 36 36 H 1.09003 * 113.61219 * 89.11455 * 18 12 11 37 37 H 1.09000 * 113.61481 * 220.02063 * 18 12 11 38 38 H 1.07996 * 126.82991 * 179.73986 * 19 4 3 39 39 H 1.09004 * 109.47087 * 90.34179 * 21 20 19 40 40 H 0.96696 * 113.99741 * 60.00033 * 22 21 20 41 41 H 1.48497 * 110.00180 * 58.68170 * 23 21 20 42 42 H 1.48505 * 110.00050 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5462 0.7176 0.0006 5 6 4.7284 1.5957 0.0013 6 8 5.8446 1.1127 0.0013 7 7 4.5734 2.9345 0.0020 8 6 5.7495 3.8081 0.0033 9 6 5.2988 5.2702 0.0032 10 1 4.4807 5.4610 0.6978 11 6 6.4586 6.2723 0.1273 12 6 6.5428 6.2447 -1.4080 13 1 7.2052 5.4705 -1.7952 14 16 6.8527 7.8717 -2.1480 15 6 6.7379 7.5050 -3.9208 16 8 5.7848 8.7404 -1.7953 17 8 8.1878 8.2573 -1.8509 18 6 5.0586 5.8426 -1.4038 19 6 3.5374 -0.7492 -0.0056 20 6 2.2446 -1.1197 0.0004 21 6 1.7397 -2.5396 0.0004 22 8 0.4810 -2.5976 -0.6737 23 14 2.9651 -3.6346 -0.8771 24 1 -0.3633 -0.0003 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3634 0.8902 0.5135 27 1 1.8767 2.1241 -0.0005 28 1 3.6831 3.3197 0.0024 29 1 6.3481 3.6127 -0.8865 30 1 6.3470 3.6117 0.8936 31 1 7.3397 5.8616 0.6203 32 1 6.1602 7.2398 0.5309 33 1 5.7461 7.1140 -4.1475 34 1 6.9085 8.4174 -4.4924 35 1 7.4906 6.7632 -4.1879 36 1 4.3759 6.6922 -1.4187 37 1 4.8094 5.0849 -2.1467 38 1 4.3980 -1.4017 -0.0108 39 1 1.6175 -2.8818 1.0281 40 1 0.5146 -2.3067 -1.5952 41 1 4.2868 -3.5586 -0.2045 42 1 2.4784 -5.0376 -0.8845 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:33 Heat of formation + Delta-G solvation = -52.008202 kcal Electronic energy + Delta-G solvation = -25674.594173 eV Core-core repulsion = 21750.970830 eV Total energy + Delta-G solvation = -3923.623343 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.52391 -40.89887 -39.61803 -37.96778 -37.86681 -37.01953 -35.34447 -33.86708 -31.68793 -30.70912 -29.43414 -27.60303 -27.08341 -26.37043 -25.26926 -23.36735 -21.24981 -20.74816 -20.29314 -19.79753 -18.98204 -18.53947 -17.47913 -17.23548 -17.07570 -16.93040 -16.85492 -16.72567 -16.11436 -15.88980 -15.65657 -15.43140 -14.96584 -14.79349 -14.54783 -14.37817 -14.25047 -14.16425 -13.97468 -13.85116 -13.58510 -13.42089 -13.31760 -13.28508 -13.12583 -13.00245 -12.81014 -12.29189 -12.06620 -11.99074 -11.85675 -11.80411 -11.16437 -10.84979 -10.80932 -10.07831 -9.62239 -9.26640 -5.04644 -1.04924 0.71359 1.00913 1.36195 1.61059 1.65646 1.80941 1.99299 2.20087 2.47431 2.64749 2.74467 3.07377 3.14487 3.22427 3.32177 3.40623 3.49767 3.70160 3.73349 3.76269 3.86157 4.00503 4.08406 4.17350 4.21351 4.32163 4.33443 4.38881 4.40019 4.47979 4.60190 4.60689 4.63176 4.69539 4.78842 4.88761 4.94619 5.03603 5.43727 5.63697 5.91141 6.08429 6.29806 6.58726 7.40589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.425 5.425 3 C 0.051 3.949 4 C -0.227 4.227 5 C 0.591 3.409 6 O -0.542 6.542 7 N -0.732 5.732 8 C 0.137 3.863 9 C -0.113 4.113 10 H 0.096 0.904 11 C -0.098 4.098 12 C -0.608 4.608 13 H 0.154 0.846 14 S 2.423 3.577 15 C -0.655 4.655 16 O -0.937 6.937 17 O -0.939 6.939 18 C -0.112 4.112 19 C -0.137 4.137 20 C -0.019 4.019 21 C -0.043 4.043 22 O -0.544 6.544 23 Si 0.715 3.285 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.171 0.829 28 H 0.398 0.602 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.118 0.882 40 H 0.380 0.620 41 H -0.251 1.251 42 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 -0.763 -3.687 7.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.099 5.099 3 C -0.085 4.085 4 C -0.237 4.237 5 C 0.380 3.620 6 O -0.419 6.419 7 N -0.384 5.384 8 C 0.014 3.986 9 C -0.133 4.133 10 H 0.114 0.886 11 C -0.137 4.137 12 C -0.717 4.717 13 H 0.172 0.828 14 S 2.605 3.395 15 C -0.804 4.804 16 O -0.934 6.934 17 O -0.936 6.936 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.128 4.128 21 C -0.154 4.154 22 O -0.349 6.349 23 Si 0.614 3.386 24 H 0.096 0.904 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.188 0.812 28 H 0.232 0.768 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.108 0.892 38 H 0.169 0.831 39 H 0.135 0.865 40 H 0.227 0.773 41 H -0.175 1.175 42 H -0.177 1.177 Dipole moment (debyes) X Y Z Total from point charges -5.533 -1.242 -2.641 6.256 hybrid contribution -0.778 -0.063 0.046 0.782 sum -6.312 -1.305 -2.596 6.948 Atomic orbital electron populations 1.22270 0.76155 1.05091 1.04014 1.43483 1.07041 1.04913 1.54475 1.21914 0.90073 0.91785 1.04766 1.20278 0.91461 0.93909 1.18071 1.17387 0.88114 0.81144 0.75396 1.90800 1.25871 1.75192 1.50056 1.45777 1.09663 1.05831 1.77148 1.21126 0.87886 0.86543 1.03066 1.22450 0.99294 0.93763 0.97777 0.88621 1.22598 1.00124 1.00978 0.89966 1.31766 1.07271 1.23398 1.09267 0.82786 1.07815 0.75338 0.77759 0.78556 1.30230 1.11660 1.12620 1.25898 1.93607 1.56846 1.60960 1.81970 1.93614 1.36428 1.80607 1.82914 1.22839 0.91059 1.02552 0.98582 1.21735 0.94984 0.93259 1.06109 1.20811 0.90571 0.89099 1.12308 1.24826 0.93615 0.94798 1.02117 1.86478 1.29791 1.89488 1.29176 0.94104 0.76824 0.77739 0.89915 0.90351 0.88233 0.90047 0.81211 0.76784 0.90942 0.90694 0.88791 0.88071 0.85276 0.85238 0.85290 0.87400 0.89247 0.83065 0.86511 0.77274 1.17533 1.17684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.27 9.81 59.84 0.59 0.32 16 2 N -0.42 0.67 3.09 -119.90 -0.37 0.30 16 3 C 0.05 -0.08 10.83 -16.84 -0.18 -0.27 16 4 C -0.23 -0.31 6.29 -103.35 -0.65 -0.96 16 5 C 0.59 1.57 7.81 -12.59 -0.10 1.47 16 6 O -0.54 -3.80 16.97 5.25 0.09 -3.71 16 7 N -0.73 0.89 5.55 -61.43 -0.34 0.55 16 8 C 0.14 -0.21 5.36 -4.04 -0.02 -0.23 16 9 C -0.11 0.40 3.94 -89.81 -0.35 0.05 16 10 H 0.10 -0.42 8.14 -51.93 -0.42 -0.85 16 11 C -0.10 0.27 7.26 -25.92 -0.19 0.08 16 12 C -0.61 2.16 3.81 -25.92 -0.10 2.06 16 13 H 0.15 -0.81 7.72 -51.93 -0.40 -1.21 16 14 S 2.42 -3.26 5.30 -107.50 -0.57 -3.83 16 15 C -0.65 2.66 10.62 101.05 1.07 3.74 16 16 O -0.94 -1.90 17.34 -57.83 -1.00 -2.91 16 17 O -0.94 -2.98 18.10 -57.83 -1.05 -4.03 16 18 C -0.11 0.48 7.16 -25.92 -0.19 0.30 16 19 C -0.14 -0.25 9.49 -37.50 -0.36 -0.60 16 20 C -0.02 0.00 6.14 -81.87 -0.50 -0.50 16 21 C -0.04 0.06 2.86 36.01 0.10 0.16 16 22 O -0.54 1.20 10.32 -35.23 -0.36 0.83 16 23 Si 0.71 -1.03 31.28 -169.99 -5.32 -6.35 16 24 H 0.08 -0.43 8.14 -51.93 -0.42 -0.85 16 25 H 0.10 -0.31 6.73 -51.93 -0.35 -0.66 16 26 H 0.08 -0.44 8.13 -51.93 -0.42 -0.86 16 27 H 0.17 -0.90 7.45 -52.49 -0.39 -1.29 16 28 H 0.40 -1.67 7.42 -40.82 -0.30 -1.97 16 29 H 0.07 -0.07 7.40 -51.93 -0.38 -0.46 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.09 -0.28 8.10 -51.93 -0.42 -0.70 16 32 H 0.10 -0.28 8.10 -51.93 -0.42 -0.70 16 33 H 0.13 -0.75 8.14 -51.93 -0.42 -1.18 16 34 H 0.13 -0.51 8.14 -51.92 -0.42 -0.93 16 35 H 0.13 -0.70 8.14 -51.92 -0.42 -1.13 16 36 H 0.11 -0.48 7.48 -51.93 -0.39 -0.87 16 37 H 0.09 -0.48 8.10 -51.93 -0.42 -0.90 16 38 H 0.15 0.37 6.66 -52.49 -0.35 0.02 16 39 H 0.12 -0.10 7.96 -51.93 -0.41 -0.52 16 40 H 0.38 -2.10 8.70 45.56 0.40 -1.71 16 41 H -0.25 -0.37 6.77 56.52 0.38 0.02 16 42 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 LS Contribution 362.01 15.07 5.46 5.46 Total: 0.00 -14.83 362.01 -10.36 -25.19 By element: Atomic # 1 Polarization: -11.10 SS G_CDS: -6.02 Total: -17.12 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.87 Total: 5.62 kcal Atomic # 7 Polarization: 1.55 SS G_CDS: -0.71 Total: 0.84 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -2.32 Total: -9.81 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -5.32 Total: -6.35 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -0.57 Total: -3.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -14.83 -10.36 -25.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.817 kcal (2) G-P(sol) polarization free energy of solvation -14.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds