Wall clock time and date at job start Tue Mar 9 2021 13:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34660 * 124.85138 * 2 1 4 4 C 1.36773 * 108.39440 * 179.97438 * 3 2 1 5 5 C 1.47263 * 126.94056 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00200 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00095 * 0.02620 * 5 4 3 8 8 C 1.46503 * 120.00417 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47522 * 179.97438 * 8 7 5 10 10 H 1.08998 * 112.84989 * 43.80232 * 9 8 7 11 11 C 1.53772 * 113.61534 * 175.00291 * 9 8 7 12 12 C 1.53781 * 87.08298 * 89.19944 * 11 9 8 13 13 H 1.09000 * 113.61509 * 270.80067 * 12 11 9 14 14 S 1.81399 * 113.61454 * 139.98177 * 12 11 9 15 15 C 1.81397 * 101.92362 * 185.00183 * 14 12 11 16 16 O 1.42107 * 108.57811 * 299.48764 * 14 12 11 17 17 O 1.42101 * 108.57883 * 70.51113 * 14 12 11 18 18 C 1.53777 * 87.08144 * 25.43190 * 12 11 9 19 19 C 1.46688 * 106.11584 * 0.26614 * 4 3 2 20 20 C 1.34486 * 106.33056 * 359.56824 * 19 4 3 21 21 C 1.50700 * 125.56680 * 180.14316 * 20 19 4 22 22 O 1.42903 * 109.47067 * 210.33484 * 21 20 19 23 23 Si 1.86295 * 109.47429 * 330.33956 * 21 20 19 24 24 H 1.09006 * 109.47064 * 90.01562 * 1 2 3 25 25 H 1.08997 * 109.47640 * 210.01779 * 1 2 3 26 26 H 1.09001 * 109.47428 * 330.02349 * 1 2 3 27 27 H 1.07997 * 125.80359 * 359.96980 * 3 2 1 28 28 H 0.97008 * 119.99928 * 0.02562 * 7 5 4 29 29 H 1.09006 * 109.46578 * 60.00129 * 8 7 5 30 30 H 1.09001 * 109.47084 * 300.00124 * 8 7 5 31 31 H 1.08996 * 113.61775 * 334.65021 * 11 9 8 32 32 H 1.09000 * 113.69530 * 203.75863 * 11 9 8 33 33 H 1.08997 * 109.47291 * 59.99557 * 15 14 12 34 34 H 1.09002 * 109.47649 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.46904 * 300.00230 * 15 14 12 36 36 H 1.09003 * 113.61219 * 89.11455 * 18 12 11 37 37 H 1.09000 * 113.61481 * 220.02063 * 18 12 11 38 38 H 1.07996 * 126.82991 * 179.73986 * 19 4 3 39 39 H 1.09004 * 109.47087 * 90.34179 * 21 20 19 40 40 H 0.96696 * 113.99741 * 60.00033 * 22 21 20 41 41 H 1.48497 * 110.00180 * 58.68170 * 23 21 20 42 42 H 1.48505 * 110.00050 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2344 1.1051 0.0000 4 6 3.5462 0.7176 0.0006 5 6 4.7284 1.5957 0.0013 6 8 5.8446 1.1127 0.0013 7 7 4.5734 2.9345 0.0020 8 6 5.7495 3.8081 0.0033 9 6 5.2988 5.2702 0.0032 10 1 4.4807 5.4610 0.6978 11 6 6.4586 6.2723 0.1273 12 6 6.5428 6.2447 -1.4080 13 1 7.2052 5.4705 -1.7952 14 16 6.8527 7.8717 -2.1480 15 6 6.7379 7.5050 -3.9208 16 8 5.7848 8.7404 -1.7953 17 8 8.1878 8.2573 -1.8509 18 6 5.0586 5.8426 -1.4038 19 6 3.5374 -0.7492 -0.0056 20 6 2.2446 -1.1197 0.0004 21 6 1.7397 -2.5396 0.0004 22 8 0.4810 -2.5976 -0.6737 23 14 2.9651 -3.6346 -0.8771 24 1 -0.3633 -0.0003 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3634 0.8902 0.5135 27 1 1.8767 2.1241 -0.0005 28 1 3.6831 3.3197 0.0024 29 1 6.3481 3.6127 -0.8865 30 1 6.3470 3.6117 0.8936 31 1 7.3397 5.8616 0.6203 32 1 6.1602 7.2398 0.5309 33 1 5.7461 7.1140 -4.1475 34 1 6.9085 8.4174 -4.4924 35 1 7.4906 6.7632 -4.1879 36 1 4.3759 6.6922 -1.4187 37 1 4.8094 5.0849 -2.1467 38 1 4.3980 -1.4017 -0.0108 39 1 1.6175 -2.8818 1.0281 40 1 0.5146 -2.3067 -1.5952 41 1 4.2868 -3.5586 -0.2045 42 1 2.4784 -5.0376 -0.8845 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:32 Heat of formation + Delta-G solvation = -60.778203 kcal Electronic energy + Delta-G solvation = -25674.974469 eV Core-core repulsion = 21750.970830 eV Total energy + Delta-G solvation = -3924.003639 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44652 -40.78018 -39.63333 -37.98647 -37.72090 -37.03826 -35.41080 -33.72879 -31.61804 -30.42619 -29.30657 -27.38358 -26.79844 -26.27596 -25.10732 -23.33797 -21.22723 -20.64120 -20.17781 -19.66263 -18.84968 -18.38874 -17.33205 -17.11445 -17.03542 -16.86923 -16.78013 -16.61973 -16.12408 -15.71057 -15.49495 -15.34142 -14.86525 -14.72546 -14.58107 -14.11358 -14.08665 -13.93443 -13.86610 -13.58554 -13.44913 -13.22064 -13.19452 -13.15782 -13.07171 -13.03166 -12.68805 -12.19149 -12.09275 -11.95103 -11.59542 -11.54474 -11.12942 -10.84614 -10.74159 -10.13578 -9.56841 -9.20172 -5.00133 -0.89779 0.75622 1.03585 1.40217 1.63110 1.85121 1.89406 2.05825 2.27059 2.56190 2.65722 2.94704 3.30754 3.35354 3.43960 3.52102 3.60698 3.65254 3.89410 3.99520 4.09968 4.18424 4.27917 4.35691 4.38646 4.43733 4.46123 4.55810 4.61603 4.65545 4.76121 4.83433 4.91126 4.93394 4.95597 4.97693 5.00625 5.02084 5.27631 5.48682 5.63938 5.97332 6.25773 6.63172 6.66517 7.35316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.422 5.422 3 C 0.079 3.921 4 C -0.261 4.261 5 C 0.586 3.414 6 O -0.600 6.600 7 N -0.712 5.712 8 C 0.137 3.863 9 C -0.103 4.103 10 H 0.111 0.889 11 C -0.114 4.114 12 C -0.593 4.593 13 H 0.174 0.826 14 S 2.418 3.582 15 C -0.642 4.642 16 O -0.978 6.978 17 O -0.996 6.996 18 C -0.106 4.106 19 C -0.169 4.169 20 C -0.015 4.015 21 C -0.034 4.034 22 O -0.546 6.546 23 Si 0.785 3.215 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.213 0.787 28 H 0.416 0.584 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.130 0.870 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.396 0.604 41 H -0.300 1.300 42 H -0.286 1.286 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.338 -0.258 -4.826 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.096 5.096 3 C -0.059 4.059 4 C -0.271 4.271 5 C 0.377 3.623 6 O -0.482 6.482 7 N -0.364 5.364 8 C 0.013 3.987 9 C -0.123 4.123 10 H 0.129 0.871 11 C -0.153 4.153 12 C -0.705 4.705 13 H 0.191 0.809 14 S 2.607 3.393 15 C -0.794 4.794 16 O -0.976 6.976 17 O -0.993 6.993 18 C -0.144 4.144 19 C -0.194 4.194 20 C -0.124 4.124 21 C -0.145 4.145 22 O -0.354 6.354 23 Si 0.691 3.309 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.230 0.770 28 H 0.253 0.747 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.246 0.754 41 H -0.227 1.227 42 H -0.213 1.213 Dipole moment (debyes) X Y Z Total from point charges -8.413 -0.658 -3.785 9.249 hybrid contribution 0.075 -0.290 0.397 0.497 sum -8.339 -0.948 -3.389 9.051 Atomic orbital electron populations 1.22496 0.74110 1.05722 1.05489 1.43725 1.08181 1.04372 1.53283 1.22435 0.88698 0.93325 1.01451 1.20274 0.92474 0.93479 1.20872 1.17687 0.87720 0.82262 0.74668 1.90762 1.27979 1.76352 1.53127 1.45595 1.10744 1.04628 1.75455 1.21124 0.87756 0.87681 1.02152 1.22321 0.99192 0.91857 0.98914 0.87127 1.22736 1.00665 1.01240 0.90660 1.31679 1.08731 1.21611 1.08446 0.80884 1.07559 0.73419 0.78340 0.79946 1.30094 1.13978 1.13430 1.21912 1.93546 1.57305 1.63310 1.83392 1.93541 1.38843 1.82356 1.84538 1.22924 0.90115 1.03068 0.98334 1.21726 0.95418 0.94003 1.08208 1.20764 0.90083 0.89976 1.11619 1.24644 0.93813 0.94132 1.01921 1.86459 1.28821 1.89544 1.30553 0.93273 0.73521 0.75364 0.88771 0.88420 0.89116 0.87988 0.77024 0.74710 0.91314 0.92423 0.89043 0.88276 0.82697 0.85184 0.83372 0.86837 0.87267 0.85274 0.86901 0.75367 1.22736 1.21344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.70 9.81 127.77 1.25 0.56 16 2 N -0.42 2.18 3.09 -533.25 -1.65 0.54 16 3 C 0.08 -0.44 10.83 83.92 0.91 0.47 16 4 C -0.26 -0.74 6.29 -19.04 -0.12 -0.86 16 5 C 0.59 3.60 7.81 86.62 0.68 4.27 16 6 O -0.60 -9.97 16.97 -4.12 -0.07 -10.04 16 7 N -0.71 2.27 5.55 -466.51 -2.59 -0.32 16 8 C 0.14 -0.43 5.36 86.38 0.46 0.03 16 9 C -0.10 0.85 3.94 -10.27 -0.04 0.81 16 10 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 11 C -0.11 0.60 7.26 31.12 0.23 0.83 16 12 C -0.59 4.56 3.81 31.12 0.12 4.67 16 13 H 0.17 -2.00 7.72 -2.39 -0.02 -2.02 16 14 S 2.42 -5.14 5.30 -56.49 -0.30 -5.44 16 15 C -0.64 6.14 10.62 113.37 1.20 7.35 16 16 O -0.98 -4.90 17.34 -127.37 -2.21 -7.11 16 17 O -1.00 -8.25 18.10 -127.37 -2.31 -10.55 16 18 C -0.11 1.12 7.16 31.12 0.22 1.34 16 19 C -0.17 -0.87 9.49 23.62 0.22 -0.65 16 20 C -0.01 0.01 6.14 40.98 0.25 0.26 16 21 C -0.03 0.09 2.86 71.24 0.20 0.30 16 22 O -0.55 3.16 10.32 -148.98 -1.54 1.62 16 23 Si 0.78 -1.07 31.28 68.60 2.15 1.07 16 24 H 0.10 -1.43 8.14 -2.38 -0.02 -1.45 16 25 H 0.09 -0.78 6.73 -2.39 -0.02 -0.80 16 26 H 0.10 -1.52 8.13 -2.39 -0.02 -1.54 16 27 H 0.21 -3.19 7.45 -2.91 -0.02 -3.22 16 28 H 0.42 -4.48 7.42 -92.70 -0.69 -5.17 16 29 H 0.07 -0.14 7.40 -2.38 -0.02 -0.16 16 30 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.09 -0.45 8.10 -2.39 -0.02 -0.47 16 32 H 0.10 -0.47 8.10 -2.39 -0.02 -0.49 16 33 H 0.15 -2.24 8.14 -2.39 -0.02 -2.26 16 34 H 0.13 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.15 -1.92 8.14 -2.39 -0.02 -1.94 16 36 H 0.11 -1.23 7.48 -2.39 -0.02 -1.25 16 37 H 0.11 -1.52 8.10 -2.39 -0.02 -1.54 16 38 H 0.13 1.12 6.66 -2.91 -0.02 1.10 16 39 H 0.11 -0.18 7.96 -2.39 -0.02 -0.19 16 40 H 0.40 -5.18 8.70 -74.06 -0.64 -5.82 16 41 H -0.30 -1.98 6.77 99.48 0.67 -1.31 16 42 H -0.29 -1.22 7.11 99.48 0.71 -0.51 16 Total: 0.00 -39.05 362.01 -3.19 -42.24 By element: Atomic # 1 Polarization: -31.10 SS G_CDS: -0.27 Total: -31.38 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.59 Total: 19.37 kcal Atomic # 7 Polarization: 4.45 SS G_CDS: -4.23 Total: 0.22 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -6.12 Total: -26.08 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.15 Total: 1.07 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -0.30 Total: -5.44 kcal Total: -39.05 -3.19 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.540 kcal (2) G-P(sol) polarization free energy of solvation -39.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds