Wall clock time and date at job start Tue Mar 9 2021 13:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42106 * 108.57969 * 2 1 4 4 O 1.42096 * 108.57996 * 228.97391 * 2 1 3 5 5 C 1.81392 * 101.92137 * 114.48760 * 2 1 3 6 6 H 1.08998 * 112.91187 * 53.74949 * 5 2 1 7 7 C 1.53783 * 113.61505 * 185.00296 * 5 2 1 8 8 C 1.53784 * 87.08363 * 139.97941 * 7 5 2 9 9 H 1.08999 * 113.61062 * 219.93481 * 8 7 5 10 10 C 1.53000 * 113.61362 * 89.11361 * 8 7 5 11 11 N 1.46500 * 109.46969 * 176.52957 * 10 8 7 12 12 C 1.34775 * 120.00161 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.47532 * 120.00363 * 179.97438 * 12 11 10 15 15 C 1.40133 * 120.19691 * 179.97438 * 14 12 11 16 16 O 1.35654 * 120.14758 * 359.96569 * 15 14 12 17 17 C 1.38710 * 119.70333 * 179.97438 * 15 14 12 18 18 C 1.38053 * 120.08514 * 0.03181 * 17 15 14 19 19 C 1.50699 * 119.80725 * 179.97438 * 18 17 15 20 20 O 1.42892 * 109.47249 * 300.00041 * 19 18 17 21 21 Si 1.86298 * 109.47032 * 179.97438 * 19 18 17 22 22 C 1.38558 * 120.38775 * 0.24370 * 18 17 15 23 23 C 1.37792 * 120.29868 * 359.45302 * 22 18 17 24 24 C 1.53781 * 87.16998 * 334.52379 * 8 7 5 25 25 H 1.09003 * 109.46959 * 305.51599 * 1 2 3 26 26 H 1.09008 * 109.47169 * 65.51199 * 1 2 3 27 27 H 1.08996 * 109.47257 * 185.51495 * 1 2 3 28 28 H 1.08990 * 113.61540 * 25.42761 * 7 5 2 29 29 H 1.09002 * 113.61302 * 254.52422 * 7 5 2 30 30 H 1.09007 * 109.47308 * 56.53036 * 10 8 7 31 31 H 1.08994 * 109.47395 * 296.52883 * 10 8 7 32 32 H 0.97005 * 119.99863 * 0.02562 * 11 10 8 33 33 H 0.96709 * 113.99589 * 270.01549 * 16 15 14 34 34 H 1.07999 * 119.95778 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.46453 * 60.00109 * 19 18 17 36 36 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 37 37 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 38 38 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 39 39 H 1.07998 * 119.84481 * 179.70488 * 22 18 17 40 40 H 1.08002 * 120.04348 * 180.27202 * 23 22 18 41 41 H 1.09004 * 113.61088 * 140.02586 * 24 8 7 42 42 H 1.09001 * 113.61596 * 270.92659 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6152 6 1 1.6955 -1.6954 1.7690 7 6 3.6893 -0.7535 1.9508 8 6 3.2921 -0.3792 3.3885 9 1 3.9586 0.3495 3.8499 10 6 3.0231 -1.5896 4.2848 11 7 2.7350 -1.1341 5.6470 12 6 2.4655 -2.0322 6.6151 13 8 2.4619 -3.2206 6.3580 14 6 2.1760 -1.5735 7.9871 15 6 1.8947 -2.5038 8.9967 16 8 1.8866 -3.8311 8.7170 17 6 1.6244 -2.0612 10.2832 18 6 1.6322 -0.7100 10.5662 19 6 1.3371 -0.2361 11.9660 20 8 0.0282 -0.6638 12.3476 21 14 1.4247 1.6239 12.0232 22 6 1.9042 0.2132 9.5695 23 6 2.1810 -0.2091 8.2874 24 6 2.0174 0.2420 2.7933 25 1 -0.3633 0.5970 0.8365 26 1 -0.3634 0.4260 -0.9353 27 1 -0.3633 -1.0229 0.0988 28 1 4.2603 0.0216 1.4397 29 1 4.1439 -1.7406 1.8664 30 1 3.9009 -2.2359 4.2958 31 1 2.1681 -2.1447 3.8989 32 1 2.7376 -0.1859 5.8521 33 1 1.0242 -4.1693 8.4390 34 1 1.4067 -2.7746 11.0643 35 1 2.0714 -0.6555 12.6538 36 1 -0.6772 -0.3276 11.7780 37 1 0.4507 2.2079 11.0663 38 1 1.1361 2.1039 13.3986 39 1 1.9033 1.2684 9.7996 40 1 2.3968 0.5140 7.5147 41 1 1.1231 0.0581 3.3888 42 1 2.1321 1.2889 2.5122 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:59 Heat of formation + Delta-G solvation = -113.141262 kcal Electronic energy + Delta-G solvation = -27207.923245 eV Core-core repulsion = 23055.704170 eV Total energy + Delta-G solvation = -4152.219074 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.74458 -40.76373 -39.64955 -38.49675 -38.00563 -37.29272 -37.05922 -35.50698 -33.00881 -31.19075 -30.75893 -29.55804 -27.45689 -27.13678 -25.41465 -24.01890 -23.34628 -21.67292 -20.78672 -19.91147 -19.38358 -18.66718 -18.60972 -18.34509 -17.39198 -17.26587 -17.05393 -16.72872 -16.42789 -16.39100 -16.26701 -15.96655 -15.85617 -15.35558 -15.01844 -14.82527 -14.50632 -14.39586 -14.29159 -14.04883 -13.91523 -13.80887 -13.49089 -13.29525 -13.18274 -13.07551 -13.03041 -12.87835 -12.47316 -12.16912 -12.11041 -11.93208 -11.87386 -11.69714 -11.21400 -10.93081 -10.72724 -10.29503 -10.11566 -9.87074 -5.09777 -1.09195 -0.48613 0.02812 1.10370 1.45050 1.61283 1.69326 1.83533 1.92554 2.42484 2.50769 2.68268 3.00211 3.01471 3.16729 3.22262 3.23362 3.31699 3.37246 3.55028 3.65258 3.72171 3.80372 3.90610 3.96403 4.12099 4.13542 4.28252 4.29320 4.30534 4.49410 4.53108 4.54985 4.57966 4.61365 4.62271 4.71139 4.88262 4.94723 5.04539 5.12193 5.25952 5.45291 6.22596 6.33125 6.63799 7.12060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.424 3.576 3 O -0.936 6.936 4 O -0.938 6.938 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.097 4.097 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.728 5.728 12 C 0.558 3.442 13 O -0.517 6.517 14 C -0.165 4.165 15 C 0.173 3.827 16 O -0.476 6.476 17 C -0.129 4.129 18 C -0.074 4.074 19 C -0.081 4.081 20 O -0.526 6.526 21 Si 0.689 3.311 22 C -0.135 4.135 23 C -0.065 4.065 24 C -0.112 4.112 25 H 0.128 0.872 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.398 0.602 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.377 0.623 37 H -0.258 1.258 38 H -0.255 1.255 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 4.436 2.011 5.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.933 6.933 4 O -0.935 6.935 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.136 4.136 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.013 3.987 11 N -0.382 5.382 12 C 0.345 3.655 13 O -0.393 6.393 14 C -0.169 4.169 15 C 0.126 3.874 16 O -0.287 6.287 17 C -0.147 4.147 18 C -0.075 4.075 19 C -0.191 4.191 20 O -0.333 6.333 21 Si 0.590 3.410 22 C -0.153 4.153 23 C -0.084 4.084 24 C -0.151 4.151 25 H 0.147 0.853 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.256 0.744 34 H 0.159 0.841 35 H 0.142 0.858 36 H 0.225 0.775 37 H -0.183 1.183 38 H -0.180 1.180 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.107 0.893 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.974 4.305 1.895 4.803 hybrid contribution -2.231 -0.453 0.228 2.288 sum -3.205 3.852 2.123 5.442 Atomic orbital electron populations 1.30235 1.26693 1.11638 1.11865 1.07799 0.78453 0.75867 0.77286 1.93610 1.79194 1.34167 1.86317 1.93616 1.79061 1.66990 1.53837 1.31829 1.07760 1.12223 1.19992 0.82839 1.22591 0.90650 1.04623 0.95706 1.22458 0.98063 0.97728 0.95168 0.88456 1.21169 1.02085 0.95301 0.80145 1.45865 1.72748 1.10121 1.09475 1.18038 0.77200 0.85934 0.84280 1.90851 1.50219 1.15827 1.82389 1.20402 1.08476 0.94054 0.93919 1.18512 0.94290 0.83714 0.90855 1.84769 1.37002 1.18181 1.88766 1.21353 1.01042 0.95797 0.96559 1.20402 0.97557 0.93451 0.96056 1.25165 0.87319 1.12549 0.94065 1.86634 1.15017 1.74436 1.57176 0.94905 0.91235 0.73761 0.81101 1.20958 1.02121 0.99428 0.92789 1.21143 0.96547 0.93821 0.96871 1.22894 0.99693 0.98255 0.94211 0.85298 0.85202 0.85325 0.87957 0.88750 0.90446 0.90847 0.76412 0.74375 0.84132 0.85845 0.77541 1.18258 1.17972 0.84615 0.84808 0.89328 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.85 10.62 101.05 1.07 3.93 16 2 S 2.42 -4.13 5.30 -107.50 -0.57 -4.70 16 3 O -0.94 -1.58 17.34 -57.83 -1.00 -2.58 16 4 O -0.94 -2.67 18.10 -57.83 -1.05 -3.72 16 5 C -0.61 2.47 3.82 -25.77 -0.10 2.37 16 6 H 0.15 -0.89 7.69 -51.93 -0.40 -1.29 16 7 C -0.10 0.32 7.26 -25.92 -0.19 0.13 16 8 C -0.11 0.48 3.93 -89.81 -0.35 0.13 16 9 H 0.10 -0.49 8.14 -51.93 -0.42 -0.92 16 10 C 0.14 -0.32 5.35 -4.04 -0.02 -0.34 16 11 N -0.73 1.59 5.51 -61.35 -0.34 1.25 16 12 C 0.56 0.71 7.76 -12.47 -0.10 0.61 16 13 O -0.52 -2.66 15.16 -16.59 -0.25 -2.91 16 14 C -0.16 -0.01 5.89 -104.85 -0.62 -0.63 16 15 C 0.17 0.19 6.72 -38.70 -0.26 -0.07 16 16 O -0.48 -1.03 11.58 -40.54 -0.47 -1.50 16 17 C -0.13 0.01 9.53 -39.47 -0.38 -0.36 16 18 C -0.07 0.11 5.39 -104.57 -0.56 -0.45 16 19 C -0.08 0.15 2.81 36.01 0.10 0.25 16 20 O -0.53 0.19 12.76 -35.23 -0.45 -0.26 16 21 Si 0.69 -1.88 29.77 -169.99 -5.06 -6.94 16 22 C -0.14 0.38 8.65 -39.63 -0.34 0.03 16 23 C -0.07 0.18 9.54 -39.19 -0.37 -0.20 16 24 C -0.11 0.54 7.19 -25.77 -0.19 0.36 16 25 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 26 H 0.13 -0.54 8.14 -51.92 -0.42 -0.96 16 27 H 0.13 -0.74 8.14 -51.93 -0.42 -1.16 16 28 H 0.10 -0.34 8.10 -51.93 -0.42 -0.76 16 29 H 0.09 -0.33 8.10 -51.93 -0.42 -0.75 16 30 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.07 -0.14 7.37 -51.93 -0.38 -0.53 16 32 H 0.40 -2.00 6.50 -40.82 -0.27 -2.26 16 33 H 0.40 -0.61 9.06 45.56 0.41 -0.19 16 34 H 0.14 -0.03 8.06 -52.49 -0.42 -0.45 16 35 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 36 H 0.38 -1.26 8.70 45.56 0.40 -0.86 16 37 H -0.26 0.30 7.10 56.52 0.40 0.70 16 38 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 39 H 0.14 -0.66 4.85 -52.49 -0.25 -0.91 16 40 H 0.13 -0.78 6.40 -52.49 -0.34 -1.12 16 41 H 0.09 -0.52 8.10 -51.93 -0.42 -0.95 16 42 H 0.11 -0.54 7.49 -51.93 -0.39 -0.93 16 LS Contribution 363.28 15.07 5.47 5.47 Total: 0.00 -15.10 363.28 -10.64 -25.74 By element: Atomic # 1 Polarization: -10.98 SS G_CDS: -4.63 Total: -15.60 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -2.30 Total: 5.75 kcal Atomic # 7 Polarization: 1.59 SS G_CDS: -0.34 Total: 1.25 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -3.22 Total: -10.97 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.06 Total: -6.94 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -0.57 Total: -4.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -15.10 -10.64 -25.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.403 kcal (2) G-P(sol) polarization free energy of solvation -15.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds