Wall clock time and date at job start Tue Mar 9 2021 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42106 * 108.57969 * 2 1 4 4 O 1.42096 * 108.57996 * 228.97391 * 2 1 3 5 5 C 1.81392 * 101.92137 * 114.48760 * 2 1 3 6 6 H 1.08998 * 112.91187 * 53.74949 * 5 2 1 7 7 C 1.53783 * 113.61505 * 185.00296 * 5 2 1 8 8 C 1.53784 * 87.08363 * 139.97941 * 7 5 2 9 9 H 1.08999 * 113.61062 * 219.93481 * 8 7 5 10 10 C 1.53000 * 113.61362 * 89.11361 * 8 7 5 11 11 N 1.46500 * 109.46969 * 176.52957 * 10 8 7 12 12 C 1.34775 * 120.00161 * 179.97438 * 11 10 8 13 13 O 1.21593 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.47532 * 120.00363 * 179.97438 * 12 11 10 15 15 C 1.40133 * 120.19691 * 179.97438 * 14 12 11 16 16 O 1.35654 * 120.14758 * 359.96569 * 15 14 12 17 17 C 1.38710 * 119.70333 * 179.97438 * 15 14 12 18 18 C 1.38053 * 120.08514 * 0.03181 * 17 15 14 19 19 C 1.50699 * 119.80725 * 179.97438 * 18 17 15 20 20 O 1.42892 * 109.47249 * 300.00041 * 19 18 17 21 21 Si 1.86298 * 109.47032 * 179.97438 * 19 18 17 22 22 C 1.38558 * 120.38775 * 0.24370 * 18 17 15 23 23 C 1.37792 * 120.29868 * 359.45302 * 22 18 17 24 24 C 1.53781 * 87.16998 * 334.52379 * 8 7 5 25 25 H 1.09003 * 109.46959 * 305.51599 * 1 2 3 26 26 H 1.09008 * 109.47169 * 65.51199 * 1 2 3 27 27 H 1.08996 * 109.47257 * 185.51495 * 1 2 3 28 28 H 1.08990 * 113.61540 * 25.42761 * 7 5 2 29 29 H 1.09002 * 113.61302 * 254.52422 * 7 5 2 30 30 H 1.09007 * 109.47308 * 56.53036 * 10 8 7 31 31 H 1.08994 * 109.47395 * 296.52883 * 10 8 7 32 32 H 0.97005 * 119.99863 * 0.02562 * 11 10 8 33 33 H 0.96709 * 113.99589 * 270.01549 * 16 15 14 34 34 H 1.07999 * 119.95778 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.46453 * 60.00109 * 19 18 17 36 36 H 0.96703 * 114.00176 * 299.99748 * 20 19 18 37 37 H 1.48506 * 109.99834 * 58.68765 * 21 19 18 38 38 H 1.48502 * 110.00011 * 180.02562 * 21 19 18 39 39 H 1.07998 * 119.84481 * 179.70488 * 22 18 17 40 40 H 1.08002 * 120.04348 * 180.27202 * 23 22 18 41 41 H 1.09004 * 113.61088 * 140.02586 * 24 8 7 42 42 H 1.09001 * 113.61596 * 270.92659 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6152 6 1 1.6955 -1.6954 1.7690 7 6 3.6893 -0.7535 1.9508 8 6 3.2921 -0.3792 3.3885 9 1 3.9586 0.3495 3.8499 10 6 3.0231 -1.5896 4.2848 11 7 2.7350 -1.1341 5.6470 12 6 2.4655 -2.0322 6.6151 13 8 2.4619 -3.2206 6.3580 14 6 2.1760 -1.5735 7.9871 15 6 1.8947 -2.5038 8.9967 16 8 1.8866 -3.8311 8.7170 17 6 1.6244 -2.0612 10.2832 18 6 1.6322 -0.7100 10.5662 19 6 1.3371 -0.2361 11.9660 20 8 0.0282 -0.6638 12.3476 21 14 1.4247 1.6239 12.0232 22 6 1.9042 0.2132 9.5695 23 6 2.1810 -0.2091 8.2874 24 6 2.0174 0.2420 2.7933 25 1 -0.3633 0.5970 0.8365 26 1 -0.3634 0.4260 -0.9353 27 1 -0.3633 -1.0229 0.0988 28 1 4.2603 0.0216 1.4397 29 1 4.1439 -1.7406 1.8664 30 1 3.9009 -2.2359 4.2958 31 1 2.1681 -2.1447 3.8989 32 1 2.7376 -0.1859 5.8521 33 1 1.0242 -4.1693 8.4390 34 1 1.4067 -2.7746 11.0643 35 1 2.0714 -0.6555 12.6538 36 1 -0.6772 -0.3276 11.7780 37 1 0.4507 2.2079 11.0663 38 1 1.1361 2.1039 13.3986 39 1 1.9033 1.2684 9.7996 40 1 2.3968 0.5140 7.5147 41 1 1.1231 0.0581 3.3888 42 1 2.1321 1.2889 2.5122 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:58 Heat of formation + Delta-G solvation = -123.476218 kcal Electronic energy + Delta-G solvation = -27208.371402 eV Core-core repulsion = 23055.704170 eV Total energy + Delta-G solvation = -4152.667231 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67738 -40.54492 -39.57466 -38.46980 -37.99324 -37.22673 -37.04592 -35.47776 -32.89714 -31.09372 -30.44772 -29.38322 -27.31133 -26.80355 -25.20155 -23.87718 -23.27185 -21.61893 -20.57723 -19.77248 -19.28018 -18.55357 -18.43347 -18.25880 -17.30891 -17.12052 -16.91299 -16.67544 -16.35606 -16.24629 -16.15347 -15.89492 -15.65417 -15.27277 -14.82638 -14.71711 -14.40707 -14.10614 -13.94779 -13.87941 -13.73324 -13.59375 -13.28822 -13.21006 -13.13141 -13.05526 -12.94649 -12.70805 -12.37292 -12.15691 -11.96206 -11.63881 -11.58874 -11.54513 -11.06481 -10.85067 -10.64488 -10.25549 -9.98274 -9.76479 -4.88471 -0.90749 -0.39987 0.16554 1.29050 1.63004 1.72798 1.84161 2.00705 2.04158 2.59335 2.64839 2.92862 3.11565 3.29466 3.40942 3.42253 3.45572 3.56190 3.62103 3.74146 3.81947 4.08259 4.11095 4.16311 4.26754 4.29396 4.40362 4.44204 4.60817 4.63844 4.65279 4.75147 4.78574 4.89980 4.94104 4.96256 4.98939 5.04735 5.16588 5.24811 5.26111 5.40023 5.61535 6.47295 6.48796 6.71302 7.17809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.418 3.582 3 O -0.978 6.978 4 O -0.996 6.996 5 C -0.593 4.593 6 H 0.174 0.826 7 C -0.113 4.113 8 C -0.104 4.104 9 H 0.112 0.888 10 C 0.136 3.864 11 N -0.710 5.710 12 C 0.555 3.445 13 O -0.566 6.566 14 C -0.179 4.179 15 C 0.151 3.849 16 O -0.499 6.499 17 C -0.141 4.141 18 C -0.071 4.071 19 C -0.095 4.095 20 O -0.548 6.548 21 Si 0.779 3.221 22 C -0.131 4.131 23 C -0.052 4.052 24 C -0.107 4.107 25 H 0.154 0.846 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.417 0.583 33 H 0.406 0.594 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.388 0.612 37 H -0.268 1.268 38 H -0.309 1.309 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.109 0.891 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 6.391 2.430 7.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.975 6.975 4 O -0.993 6.993 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.152 4.152 8 C -0.124 4.124 9 H 0.130 0.870 10 C 0.012 3.988 11 N -0.363 5.363 12 C 0.343 3.657 13 O -0.446 6.446 14 C -0.183 4.183 15 C 0.104 3.896 16 O -0.312 6.312 17 C -0.160 4.160 18 C -0.071 4.071 19 C -0.202 4.202 20 O -0.357 6.357 21 Si 0.683 3.317 22 C -0.148 4.148 23 C -0.070 4.070 24 C -0.145 4.145 25 H 0.173 0.827 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.117 0.883 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.266 0.734 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.238 0.762 37 H -0.194 1.194 38 H -0.238 1.238 39 H 0.181 0.819 40 H 0.189 0.811 41 H 0.127 0.873 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.684 6.296 2.253 6.896 hybrid contribution -2.056 -1.067 0.202 2.325 sum -3.739 5.230 2.455 6.882 Atomic orbital electron populations 1.30102 1.22785 1.13542 1.13061 1.07559 0.79717 0.74456 0.77544 1.93549 1.80843 1.35972 1.87161 1.93542 1.81017 1.67841 1.56879 1.31735 1.07519 1.13328 1.17909 0.80817 1.22729 0.91224 1.04618 0.96656 1.22339 0.98809 0.97159 0.94111 0.86969 1.21166 1.01361 0.95965 0.80273 1.45721 1.71123 1.10573 1.08924 1.18292 0.76696 0.85623 0.85127 1.90824 1.52703 1.17898 1.83179 1.20442 1.09502 0.95191 0.93116 1.18772 0.95588 0.83487 0.91725 1.84725 1.38114 1.19359 1.88997 1.21323 1.02100 0.96558 0.96019 1.20494 0.97074 0.93022 0.96558 1.25473 0.86843 1.13949 0.93977 1.86602 1.15967 1.75140 1.57954 0.93946 0.89581 0.70880 0.77255 1.21254 1.00878 1.00421 0.92280 1.21520 0.94564 0.93053 0.97847 1.22986 1.00100 0.98119 0.93334 0.82743 0.85256 0.83399 0.88275 0.88937 0.92064 0.91045 0.74480 0.73406 0.85049 0.85816 0.76231 1.19395 1.23794 0.81916 0.81069 0.87257 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.52 10.62 113.37 1.20 7.73 16 2 S 2.42 -7.00 5.30 -56.49 -0.30 -7.30 16 3 O -0.98 -4.24 17.34 -127.37 -2.21 -6.45 16 4 O -1.00 -7.54 18.10 -127.37 -2.30 -9.85 16 5 C -0.59 5.29 3.82 31.21 0.12 5.41 16 6 H 0.17 -2.26 7.69 -2.39 -0.02 -2.28 16 7 C -0.11 0.75 7.26 31.12 0.23 0.98 16 8 C -0.10 1.03 3.93 -10.27 -0.04 0.99 16 9 H 0.11 -1.39 8.14 -2.39 -0.02 -1.41 16 10 C 0.14 -0.75 5.35 86.38 0.46 -0.29 16 11 N -0.71 4.14 5.51 -466.27 -2.57 1.57 16 12 C 0.55 1.36 7.76 86.69 0.67 2.04 16 13 O -0.57 -6.61 15.16 16.91 0.26 -6.36 16 14 C -0.18 0.05 5.89 -20.01 -0.12 -0.07 16 15 C 0.15 0.49 6.72 22.84 0.15 0.64 16 16 O -0.50 -3.30 11.58 -68.78 -0.80 -4.10 16 17 C -0.14 -0.09 9.53 22.34 0.21 0.12 16 18 C -0.07 0.27 5.39 -19.83 -0.11 0.16 16 19 C -0.09 0.40 2.81 71.24 0.20 0.60 16 20 O -0.55 0.32 12.76 -148.98 -1.90 -1.58 16 21 Si 0.78 -5.33 29.77 68.60 2.04 -3.28 16 22 C -0.13 1.05 8.65 22.24 0.19 1.24 16 23 C -0.05 0.41 9.54 22.52 0.21 0.62 16 24 C -0.11 1.27 7.19 31.21 0.22 1.50 16 25 H 0.15 -2.32 8.14 -2.39 -0.02 -2.34 16 26 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.15 -2.01 8.14 -2.39 -0.02 -2.03 16 28 H 0.10 -0.58 8.10 -2.39 -0.02 -0.60 16 29 H 0.09 -0.59 8.10 -2.39 -0.02 -0.61 16 30 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.07 -0.34 7.37 -2.39 -0.02 -0.36 16 32 H 0.42 -5.40 6.50 -92.70 -0.60 -6.00 16 33 H 0.41 -0.13 9.06 -74.05 -0.67 -0.80 16 34 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 35 H 0.12 -0.57 7.96 -2.38 -0.02 -0.59 16 36 H 0.39 -2.68 8.70 -74.06 -0.64 -3.32 16 37 H -0.27 1.33 7.10 99.48 0.71 2.03 16 38 H -0.31 -0.75 7.11 99.48 0.71 -0.05 16 39 H 0.16 -2.20 4.85 -2.91 -0.01 -2.21 16 40 H 0.17 -2.75 6.40 -2.91 -0.02 -2.77 16 41 H 0.11 -1.68 8.10 -2.38 -0.02 -1.70 16 42 H 0.11 -1.35 7.49 -2.39 -0.02 -1.37 16 Total: 0.00 -38.27 363.28 -4.95 -43.22 By element: Atomic # 1 Polarization: -26.76 SS G_CDS: -0.79 Total: -27.55 kcal Atomic # 6 Polarization: 18.05 SS G_CDS: 3.62 Total: 21.66 kcal Atomic # 7 Polarization: 4.14 SS G_CDS: -2.57 Total: 1.57 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -6.96 Total: -28.33 kcal Atomic # 14 Polarization: -5.33 SS G_CDS: 2.04 Total: -3.28 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -0.30 Total: -7.30 kcal Total: -38.27 -4.95 -43.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.251 kcal (2) G-P(sol) polarization free energy of solvation -38.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds