Wall clock time and date at job start Tue Mar 9 2021 13:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39043 * 110.99815 * 236.04799 * 2 1 3 5 5 C 1.39203 * 119.93121 * 240.00456 * 4 2 1 6 6 C 1.50697 * 119.96538 * 359.97438 * 5 4 2 7 7 O 1.42902 * 109.47290 * 285.00642 * 6 5 4 8 8 Si 1.86298 * 109.47388 * 165.00260 * 6 5 4 9 9 C 1.37624 * 120.06769 * 179.97438 * 5 4 2 10 10 C 1.39775 * 119.93493 * 0.02562 * 9 5 4 11 11 C 1.47524 * 120.07094 * 180.02562 * 10 9 5 12 12 O 1.21592 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99738 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47003 * 179.97438 * 14 13 11 16 16 H 1.09009 * 112.84972 * 43.80170 * 15 14 13 17 17 C 1.53783 * 113.61493 * 174.99981 * 15 14 13 18 18 C 1.53780 * 87.07890 * 89.11762 * 17 15 14 19 19 H 1.09004 * 113.61531 * 270.88409 * 18 17 15 20 20 S 1.81402 * 113.61425 * 140.06728 * 18 17 15 21 21 C 1.81391 * 101.92242 * 184.99632 * 20 18 17 22 22 O 1.42093 * 108.57647 * 299.48814 * 20 18 17 23 23 O 1.42100 * 108.57690 * 70.50860 * 20 18 17 24 24 C 1.53777 * 113.61476 * 272.49847 * 15 14 13 25 25 C 1.39820 * 119.85821 * 359.97438 * 10 9 5 26 26 C 1.37582 * 119.93048 * 359.70200 * 25 10 9 27 27 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 28 28 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 29 29 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 30 30 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 31 31 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 32 32 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 33 33 H 1.08998 * 109.47004 * 45.00152 * 6 5 4 34 34 H 0.96699 * 114.00359 * 59.99790 * 7 6 5 35 35 H 1.48504 * 109.99992 * 300.00460 * 8 6 5 36 36 H 1.48507 * 109.99852 * 61.32086 * 8 6 5 37 37 H 1.08000 * 120.03350 * 179.97438 * 9 5 4 38 38 H 0.96995 * 120.00134 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47199 * 299.99760 * 14 13 11 40 40 H 1.08995 * 109.47203 * 59.99782 * 14 13 11 41 41 H 1.08997 * 113.61252 * 203.66659 * 17 15 14 42 42 H 1.08999 * 113.61458 * 334.56500 * 17 15 14 43 43 H 1.09005 * 109.47376 * 59.99852 * 21 20 18 44 44 H 1.09000 * 109.47239 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.47230 * 300.00074 * 21 20 18 46 46 H 1.08998 * 113.61581 * 25.42947 * 24 15 14 47 47 H 1.09001 * 113.61522 * 156.33772 * 24 15 14 48 48 H 1.08002 * 120.02916 * 180.02562 * 25 10 9 49 49 H 1.08002 * 119.96336 * 180.29518 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7250 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1173 -2.2448 0.5578 7 8 4.0867 -1.3442 1.0976 8 14 3.8119 -3.9734 0.5502 9 6 3.2735 -2.5530 -1.9156 10 6 2.9599 -2.1702 -3.2228 11 6 3.4876 -2.9401 -4.3652 12 8 4.1965 -3.9085 -4.1702 13 7 3.1847 -2.5694 -5.6251 14 6 3.7092 -3.3337 -6.7596 15 6 3.2188 -2.7075 -8.0666 16 1 3.2880 -1.6196 -8.0670 17 6 3.8128 -3.3630 -9.3246 18 6 2.6235 -4.3370 -9.2829 19 1 2.8101 -5.2286 -8.6842 20 16 1.9383 -4.7177 -10.9188 21 6 0.4991 -5.7369 -10.4943 22 8 1.4793 -3.5097 -11.5096 23 8 2.8719 -5.5240 -11.6241 24 6 1.8526 -3.2398 -8.5301 25 6 2.1441 -1.0567 -3.4453 26 6 1.6476 -0.3451 -2.3776 27 1 -0.3634 -1.0252 0.0708 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 0.5740 0.8525 30 1 1.5899 1.9163 0.8525 31 1 3.0829 1.3431 0.0709 32 1 1.7045 1.8723 -0.9233 33 1 2.2160 -2.2181 1.1701 34 1 3.7923 -0.4238 1.1320 35 1 2.8133 -4.9197 -0.0089 36 1 5.0588 -4.0162 -0.2553 37 1 3.9037 -3.4124 -1.7405 38 1 2.6195 -1.7967 -5.7806 39 1 4.7988 -3.3183 -6.7353 40 1 3.3589 -4.3639 -6.6967 41 1 3.8128 -2.7110 -10.1981 42 1 4.7764 -3.8428 -9.1534 43 1 -0.1825 -5.1606 -9.8686 44 1 -0.0140 -6.0393 -11.4072 45 1 0.8287 -6.6231 -9.9518 46 1 1.2337 -3.6203 -7.7175 47 1 1.3167 -2.5542 -9.1865 48 1 1.8997 -0.7588 -4.4543 49 1 1.0135 0.5123 -2.5488 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:05 Heat of formation + Delta-G solvation = -67.559672 kcal Electronic energy + Delta-G solvation = -31353.714406 eV Core-core repulsion = 26990.115322 eV Total energy + Delta-G solvation = -4363.599084 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88151 -40.89720 -39.96175 -38.04351 -37.72228 -37.38376 -37.09251 -35.76878 -32.98115 -31.61601 -30.48244 -29.31879 -28.58040 -26.95969 -26.88373 -26.32133 -24.94925 -23.34239 -22.97540 -21.39961 -20.50481 -19.78484 -19.03168 -18.52495 -18.07835 -17.85560 -17.46570 -17.17365 -16.96067 -16.59882 -16.53910 -16.33973 -16.03525 -15.95972 -15.62815 -15.14885 -15.08653 -14.89093 -14.68420 -14.17505 -14.11511 -14.05373 -13.96836 -13.88828 -13.66639 -13.57321 -13.33001 -13.24331 -13.15526 -13.10320 -13.06879 -12.79155 -12.74516 -12.66105 -12.35429 -12.01015 -11.68818 -11.65186 -11.46111 -11.35479 -11.05092 -10.93796 -10.39772 -10.23388 -9.88946 -9.64260 -4.92781 -0.95432 -0.53421 0.01290 1.30686 1.49030 1.57745 1.78884 1.87627 1.91996 2.49089 2.59665 2.68003 2.87902 3.22875 3.35557 3.38470 3.43208 3.53789 3.55745 3.59845 3.84292 3.97491 4.03970 4.04677 4.10080 4.11375 4.20998 4.31641 4.35957 4.38671 4.42653 4.52417 4.56726 4.57574 4.59283 4.63884 4.71284 4.81802 4.86951 4.89353 4.90429 4.93499 4.97909 4.98512 5.01374 5.11014 5.14227 5.26274 5.41369 5.75737 6.14616 6.30249 6.64912 6.96741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.524 5.524 3 C 0.022 3.978 4 C 0.132 3.868 5 C -0.113 4.113 6 C -0.064 4.064 7 O -0.544 6.544 8 Si 0.794 3.206 9 C -0.082 4.082 10 C -0.149 4.149 11 C 0.555 3.445 12 O -0.585 6.585 13 N -0.704 5.704 14 C 0.133 3.867 15 C -0.105 4.105 16 H 0.113 0.887 17 C -0.112 4.112 18 C -0.595 4.595 19 H 0.173 0.827 20 S 2.420 3.580 21 C -0.643 4.643 22 O -0.977 6.977 23 O -0.994 6.994 24 C -0.108 4.108 25 C -0.056 4.056 26 C -0.148 4.148 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.097 0.903 34 H 0.374 0.626 35 H -0.273 1.273 36 H -0.302 1.302 37 H 0.111 0.889 38 H 0.418 0.582 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.154 0.846 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.107 0.893 47 H 0.115 0.885 48 H 0.167 0.833 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.000 5.725 4.171 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.246 5.246 3 C -0.124 4.124 4 C 0.038 3.962 5 C -0.115 4.115 6 C -0.174 4.174 7 O -0.351 6.351 8 Si 0.700 3.300 9 C -0.101 4.101 10 C -0.152 4.152 11 C 0.343 3.657 12 O -0.466 6.466 13 N -0.357 5.357 14 C 0.009 3.991 15 C -0.125 4.125 16 H 0.131 0.869 17 C -0.151 4.151 18 C -0.706 4.706 19 H 0.191 0.809 20 S 2.609 3.391 21 C -0.795 4.795 22 O -0.975 6.975 23 O -0.991 6.991 24 C -0.146 4.146 25 C -0.075 4.075 26 C -0.168 4.168 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.223 0.777 35 H -0.200 1.200 36 H -0.231 1.231 37 H 0.128 0.872 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.172 0.828 44 H 0.149 0.851 45 H 0.166 0.834 46 H 0.126 0.874 47 H 0.133 0.867 48 H 0.185 0.815 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.500 3.869 3.414 8.299 hybrid contribution -1.013 1.214 -1.164 1.963 sum -7.513 5.083 2.250 9.346 Atomic orbital electron populations 1.22555 0.84023 1.03047 1.02523 1.59442 1.10023 1.15275 1.39832 1.22609 1.01056 0.86064 1.02624 1.18943 0.94010 0.93044 0.90240 1.20328 0.98949 0.96131 0.96070 1.25050 0.97856 1.04380 0.90076 1.86689 1.41962 1.21820 1.84667 0.92811 0.76701 0.73126 0.87409 1.21061 0.97823 0.98681 0.92573 1.19886 1.03517 0.99352 0.92474 1.18403 0.79747 0.83511 0.84011 1.90802 1.39791 1.29907 1.86129 1.45698 1.52492 1.33192 1.04288 1.21249 0.98896 0.95570 0.83362 1.22340 0.96445 1.01790 0.91899 0.86922 1.22733 0.96759 0.96289 0.99314 1.31697 1.09479 1.08691 1.20770 0.80897 1.07517 0.77802 0.75489 0.78308 1.30104 1.19232 1.16481 1.13686 1.93547 1.82016 1.46558 1.75340 1.93544 1.62970 1.70891 1.71719 1.22935 0.96281 0.94782 1.00594 1.21491 0.93176 0.91662 1.01190 1.21926 1.01380 1.01475 0.92045 0.91593 0.93690 0.89107 0.88885 0.91144 0.93872 0.88558 0.77688 1.19968 1.23081 0.87169 0.74308 0.91752 0.90937 0.88089 0.88873 0.82794 0.85103 0.83406 0.87441 0.86710 0.81540 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.17 9.33 127.69 1.19 1.02 16 2 N -0.52 2.23 3.70 -745.08 -2.76 -0.53 16 3 C 0.02 -0.16 9.10 127.69 1.16 1.00 16 4 C 0.13 -0.11 4.66 38.47 0.18 0.06 16 5 C -0.11 -0.50 5.28 -19.78 -0.10 -0.60 16 6 C -0.06 -0.21 2.29 71.24 0.16 -0.05 16 7 O -0.54 -2.35 12.65 -148.98 -1.89 -4.24 16 8 Si 0.79 3.98 30.40 68.60 2.09 6.06 16 9 C -0.08 -0.69 8.19 22.50 0.18 -0.51 16 10 C -0.15 -0.57 5.88 -20.07 -0.12 -0.69 16 11 C 0.55 3.39 7.76 86.69 0.67 4.07 16 12 O -0.58 -9.43 16.34 -4.01 -0.07 -9.50 16 13 N -0.70 2.26 5.51 -466.29 -2.57 -0.31 16 14 C 0.13 -0.48 5.35 86.38 0.46 -0.01 16 15 C -0.10 0.89 3.94 -10.27 -0.04 0.85 16 16 H 0.11 -1.25 8.14 -2.38 -0.02 -1.27 16 17 C -0.11 0.63 7.26 31.12 0.23 0.86 16 18 C -0.60 4.62 3.81 31.12 0.12 4.74 16 19 H 0.17 -2.02 7.72 -2.38 -0.02 -2.04 16 20 S 2.42 -5.16 5.30 -56.49 -0.30 -5.46 16 21 C -0.64 6.01 10.62 113.37 1.20 7.21 16 22 O -0.98 -4.87 17.35 -127.37 -2.21 -7.08 16 23 O -0.99 -8.13 18.10 -127.37 -2.30 -10.44 16 24 C -0.11 1.13 7.16 31.12 0.22 1.35 16 25 C -0.06 0.25 9.53 22.50 0.21 0.46 16 26 C -0.15 0.69 8.53 22.36 0.19 0.88 16 27 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.04 -0.39 7.08 -2.39 -0.02 -0.41 16 29 H 0.09 -0.80 8.12 -2.38 -0.02 -0.82 16 30 H 0.09 -0.88 8.12 -2.38 -0.02 -0.90 16 31 H 0.07 -0.45 7.41 -2.39 -0.02 -0.47 16 32 H 0.04 -0.37 7.33 -2.39 -0.02 -0.39 16 33 H 0.10 0.03 7.77 -2.39 -0.02 0.01 16 34 H 0.37 -0.15 7.48 -74.06 -0.55 -0.70 16 35 H -0.27 -2.33 7.11 99.48 0.71 -1.62 16 36 H -0.30 -4.14 6.81 99.48 0.68 -3.46 16 37 H 0.11 1.50 4.50 -2.91 -0.01 1.49 16 38 H 0.42 -4.40 6.49 -92.71 -0.60 -5.00 16 39 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.07 -0.19 7.38 -2.39 -0.02 -0.21 16 41 H 0.10 -0.52 8.10 -2.39 -0.02 -0.54 16 42 H 0.09 -0.51 8.10 -2.39 -0.02 -0.52 16 43 H 0.15 -2.17 8.14 -2.39 -0.02 -2.19 16 44 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 45 H 0.15 -1.88 8.14 -2.39 -0.02 -1.90 16 46 H 0.11 -1.47 8.10 -2.39 -0.02 -1.49 16 47 H 0.11 -1.24 7.49 -2.39 -0.02 -1.25 16 48 H 0.17 -2.09 6.39 -2.91 -0.02 -2.11 16 49 H 0.16 -1.55 6.99 -2.91 -0.02 -1.57 16 Total: 0.00 -35.51 405.39 -4.24 -39.75 By element: Atomic # 1 Polarization: -28.74 SS G_CDS: -0.16 Total: -28.90 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 5.93 Total: 20.64 kcal Atomic # 7 Polarization: 4.49 SS G_CDS: -5.33 Total: -0.84 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -6.47 Total: -31.26 kcal Atomic # 14 Polarization: 3.98 SS G_CDS: 2.09 Total: 6.06 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -0.30 Total: -5.46 kcal Total: -35.51 -4.24 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.814 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds