Wall clock time and date at job start Tue Mar 9 2021 13:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42104 * 108.58109 * 2 1 4 4 O 1.42100 * 108.57823 * 228.97234 * 2 1 3 5 5 C 1.81406 * 101.92335 * 114.48477 * 2 1 3 6 6 H 1.09000 * 112.84976 * 311.19739 * 5 2 1 7 7 C 1.53784 * 113.68638 * 82.46213 * 5 2 1 8 8 C 1.53787 * 87.07648 * 139.99373 * 7 5 2 9 9 H 1.09003 * 113.68991 * 220.00775 * 8 7 5 10 10 C 1.52997 * 113.61418 * 89.11807 * 8 7 5 11 11 N 1.46505 * 109.47212 * 87.49925 * 10 8 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21606 * 120.00433 * 0.02562 * 12 11 10 14 14 C 1.47379 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.36419 * 127.19089 * 0.03015 * 14 12 11 16 16 O 1.33655 * 108.39686 * 180.02562 * 15 14 12 17 17 C 1.34218 * 110.90901 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.43818 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46470 * 120.03187 * 18 17 16 20 20 Si 1.86293 * 109.47013 * 0.03251 * 18 17 16 21 21 C 1.34181 * 109.12260 * 359.71748 * 17 16 15 22 22 C 1.53780 * 87.08169 * 334.56416 * 8 7 5 23 23 H 1.09001 * 109.47122 * 305.51447 * 1 2 3 24 24 H 1.08996 * 109.47422 * 65.51041 * 1 2 3 25 25 H 1.08997 * 109.47208 * 185.51681 * 1 2 3 26 26 H 1.08998 * 113.61666 * 25.44913 * 7 5 2 27 27 H 1.08994 * 113.61409 * 254.53789 * 7 5 2 28 28 H 1.09002 * 109.47153 * 327.49917 * 10 8 7 29 29 H 1.09001 * 109.46832 * 207.50108 * 10 8 7 30 30 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 31 31 H 1.07994 * 125.80196 * 359.97438 * 15 14 12 32 32 H 1.08995 * 109.47264 * 240.03251 * 18 17 16 33 33 H 0.96710 * 113.99487 * 180.02562 * 19 18 17 34 34 H 1.48499 * 110.00173 * 59.99834 * 20 18 17 35 35 H 1.48506 * 109.99904 * 181.31535 * 20 18 17 36 36 H 1.08000 * 127.02460 * 180.27291 * 21 17 16 37 37 H 1.09002 * 113.60839 * 139.98089 * 22 8 7 38 38 H 1.08996 * 113.62098 * 270.79857 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6289 -0.2761 2.4298 7 6 2.1356 -2.2725 1.6215 8 6 3.3793 -2.2334 2.5253 9 1 4.1160 -3.0015 2.2900 10 6 3.0503 -2.1631 4.0178 11 7 2.8832 -3.5196 4.5455 12 6 2.5877 -3.7045 5.8473 13 8 2.4593 -2.7455 6.5839 14 6 2.4202 -5.0691 6.3783 15 6 2.5308 -6.2413 5.6893 16 8 2.3054 -7.2509 6.5357 17 6 2.0477 -6.7923 7.7705 18 6 1.7479 -7.6469 8.9751 19 8 2.7276 -7.4044 9.9867 20 14 1.7904 -9.4443 8.4874 21 6 2.1053 -5.4518 7.7625 22 6 3.6946 -0.8648 1.8988 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 2.3197 -2.7198 0.6447 27 1 1.2510 -2.6768 2.1135 28 1 2.1270 -1.6015 4.1603 29 1 3.8635 -1.6654 4.5461 30 1 2.9860 -4.2845 3.9580 31 1 2.7605 -6.3373 4.6385 32 1 0.7589 -7.3981 9.3599 33 1 2.5969 -7.9223 10.7929 34 1 3.1337 -9.7961 7.9610 35 1 1.4651 -10.2964 9.6594 36 1 1.9492 -4.7891 8.6008 37 1 4.0685 -0.1328 2.6147 38 1 4.3061 -0.9271 0.9987 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_13456056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:17 Heat of formation + Delta-G solvation = -80.362914 kcal Electronic energy + Delta-G solvation = -23665.065611 eV Core-core repulsion = 19798.031672 eV Total energy + Delta-G solvation = -3867.033939 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.73037 -41.06053 -39.84346 -38.14611 -37.99638 -37.04413 -35.55281 -33.95696 -32.10913 -30.73207 -29.46265 -27.13676 -26.74873 -25.78157 -24.13820 -22.22065 -21.24631 -20.34900 -19.82918 -19.00568 -18.80234 -18.56491 -17.37112 -17.28419 -17.16691 -16.98680 -16.95164 -16.29015 -16.14390 -15.87237 -15.85432 -14.98146 -14.68928 -14.40763 -14.27040 -14.17318 -14.07327 -14.06490 -13.90011 -13.76984 -13.40759 -13.18943 -13.03703 -12.87942 -12.82171 -12.13168 -12.09637 -11.91530 -11.85699 -11.25168 -11.03536 -10.91222 -10.73338 -10.22300 -9.79588 -5.05900 -1.07521 0.20160 0.84492 1.09033 1.35813 1.63129 1.65218 1.88559 1.94719 2.32219 2.44831 2.69361 3.02802 3.14904 3.19984 3.27371 3.34235 3.42509 3.54720 3.73999 3.81976 3.84571 3.96400 4.12715 4.14003 4.30422 4.33203 4.34396 4.55083 4.56948 4.58497 4.60249 4.65607 4.71749 4.77709 4.96374 5.19996 5.27832 5.83676 6.22108 6.35338 7.14228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.112 4.112 8 C -0.115 4.115 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.728 5.728 12 C 0.589 3.411 13 O -0.531 6.531 14 C -0.238 4.238 15 C 0.034 3.966 16 O -0.165 6.165 17 C -0.010 4.010 18 C -0.038 4.038 19 O -0.533 6.533 20 Si 0.702 3.298 21 C -0.121 4.121 22 C -0.096 4.096 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.400 0.600 31 H 0.215 0.785 32 H 0.098 0.902 33 H 0.389 0.611 34 H -0.252 1.252 35 H -0.253 1.253 36 H 0.161 0.839 37 H 0.094 0.906 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -5.431 -0.635 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.150 4.150 8 C -0.135 4.135 9 H 0.115 0.885 10 C 0.013 3.987 11 N -0.381 5.381 12 C 0.376 3.624 13 O -0.407 6.407 14 C -0.243 4.243 15 C -0.037 4.037 16 O -0.061 6.061 17 C -0.058 4.058 18 C -0.147 4.147 19 O -0.342 6.342 20 Si 0.600 3.400 21 C -0.141 4.141 22 C -0.135 4.135 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.234 0.766 31 H 0.232 0.768 32 H 0.115 0.885 33 H 0.239 0.761 34 H -0.176 1.176 35 H -0.177 1.177 36 H 0.179 0.821 37 H 0.113 0.887 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.085 -5.076 -1.127 6.046 hybrid contribution -0.248 0.012 1.425 1.446 sum -3.333 -5.065 0.298 6.070 Atomic orbital electron populations 1.30236 1.26662 1.11630 1.11912 1.07804 0.78463 0.75640 0.77529 1.93617 1.79080 1.34319 1.86473 1.93607 1.79211 1.67163 1.53338 1.31781 1.07712 1.08854 1.23481 0.82832 1.22850 0.99843 0.89957 1.02342 1.22466 0.98498 0.98909 0.93593 0.88466 1.21182 1.02571 0.83417 0.91516 1.45772 1.73235 1.09296 1.09763 1.17238 0.76224 0.87423 0.81478 1.90827 1.50218 1.42057 1.57635 1.21478 1.13950 0.93390 0.95440 1.24454 0.99236 0.84291 0.95706 1.83659 1.68101 1.36367 1.17925 1.21064 1.07567 0.92919 0.84299 1.23813 0.94052 1.10520 0.86339 1.86567 1.52016 1.67889 1.27688 0.94516 0.86930 0.72532 0.85976 1.22483 1.01948 0.93789 0.95843 1.22580 0.90476 0.97811 1.02655 0.85310 0.85207 0.85263 0.87160 0.89269 0.90727 0.90455 0.76602 0.76835 0.88460 0.76129 1.17568 1.17706 0.82090 0.88746 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.77 10.62 101.05 1.07 3.85 16 2 S 2.42 -3.88 5.34 -107.50 -0.57 -4.45 16 3 O -0.94 -2.73 18.10 -57.83 -1.05 -3.78 16 4 O -0.94 -1.68 17.20 -57.83 -0.99 -2.67 16 5 C -0.61 2.39 3.82 -25.92 -0.10 2.29 16 6 H 0.15 -0.88 7.72 -51.93 -0.40 -1.28 16 7 C -0.11 0.52 7.16 -25.91 -0.19 0.33 16 8 C -0.11 0.47 3.94 -89.81 -0.35 0.11 16 9 H 0.10 -0.49 8.14 -51.93 -0.42 -0.91 16 10 C 0.14 -0.29 5.35 -4.04 -0.02 -0.31 16 11 N -0.73 1.44 5.55 -61.40 -0.34 1.10 16 12 C 0.59 1.18 7.81 -12.54 -0.10 1.08 16 13 O -0.53 -3.40 16.98 5.27 0.09 -3.31 16 14 C -0.24 -0.24 6.31 -103.27 -0.65 -0.89 16 15 C 0.03 -0.07 11.61 30.08 0.35 0.28 16 16 O -0.16 0.02 8.89 7.64 0.07 0.09 16 17 C -0.01 -0.01 6.24 -35.74 -0.22 -0.23 16 18 C -0.04 0.04 2.97 36.01 0.11 0.14 16 19 O -0.53 -0.14 12.84 -35.23 -0.45 -0.59 16 20 Si 0.70 -1.24 32.08 -169.99 -5.45 -6.69 16 21 C -0.12 -0.27 10.87 -37.45 -0.41 -0.68 16 22 C -0.10 0.30 7.26 -25.92 -0.19 0.12 16 23 H 0.13 -0.73 8.14 -51.92 -0.42 -1.15 16 24 H 0.13 -0.53 8.14 -51.93 -0.42 -0.95 16 25 H 0.13 -0.77 8.14 -51.93 -0.42 -1.19 16 26 H 0.11 -0.51 7.37 -51.93 -0.38 -0.89 16 27 H 0.09 -0.51 8.10 -51.93 -0.42 -0.93 16 28 H 0.07 -0.13 7.39 -51.93 -0.38 -0.51 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.40 -2.10 7.44 -40.82 -0.30 -2.41 16 31 H 0.22 -1.48 7.47 -52.49 -0.39 -1.87 16 32 H 0.10 -0.32 7.96 -51.93 -0.41 -0.73 16 33 H 0.39 -1.64 8.74 45.56 0.40 -1.24 16 34 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 35 H -0.25 0.09 7.11 56.52 0.40 0.49 16 36 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.09 -0.32 8.10 -51.93 -0.42 -0.74 16 38 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 LS Contribution 342.31 15.07 5.16 5.16 Total: 0.00 -15.61 342.31 -9.12 -24.73 By element: Atomic # 1 Polarization: -10.79 SS G_CDS: -4.87 Total: -15.67 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -0.70 Total: 6.09 kcal Atomic # 7 Polarization: 1.44 SS G_CDS: -0.34 Total: 1.10 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -2.34 Total: -10.27 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.45 Total: -6.69 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -0.57 Total: -4.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -15.61 -9.12 -24.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13456056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.633 kcal (2) G-P(sol) polarization free energy of solvation -15.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds