Wall clock time and date at job start Tue Mar 9 2021 13:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42104 * 108.58109 * 2 1 4 4 O 1.42100 * 108.57823 * 228.97234 * 2 1 3 5 5 C 1.81406 * 101.92335 * 114.48477 * 2 1 3 6 6 H 1.09000 * 112.84976 * 311.19739 * 5 2 1 7 7 C 1.53784 * 113.68638 * 82.46213 * 5 2 1 8 8 C 1.53787 * 87.07648 * 139.99373 * 7 5 2 9 9 H 1.09003 * 113.68991 * 220.00775 * 8 7 5 10 10 C 1.52997 * 113.61418 * 89.11807 * 8 7 5 11 11 N 1.46505 * 109.47212 * 87.49925 * 10 8 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 8 13 13 O 1.21606 * 120.00433 * 0.02562 * 12 11 10 14 14 C 1.47379 * 119.99728 * 180.02562 * 12 11 10 15 15 C 1.36419 * 127.19089 * 0.03015 * 14 12 11 16 16 O 1.33655 * 108.39686 * 180.02562 * 15 14 12 17 17 C 1.34218 * 110.90901 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.43818 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46470 * 120.03187 * 18 17 16 20 20 Si 1.86293 * 109.47013 * 0.03251 * 18 17 16 21 21 C 1.34181 * 109.12260 * 359.71748 * 17 16 15 22 22 C 1.53780 * 87.08169 * 334.56416 * 8 7 5 23 23 H 1.09001 * 109.47122 * 305.51447 * 1 2 3 24 24 H 1.08996 * 109.47422 * 65.51041 * 1 2 3 25 25 H 1.08997 * 109.47208 * 185.51681 * 1 2 3 26 26 H 1.08998 * 113.61666 * 25.44913 * 7 5 2 27 27 H 1.08994 * 113.61409 * 254.53789 * 7 5 2 28 28 H 1.09002 * 109.47153 * 327.49917 * 10 8 7 29 29 H 1.09001 * 109.46832 * 207.50108 * 10 8 7 30 30 H 0.96996 * 119.99606 * 0.02562 * 11 10 8 31 31 H 1.07994 * 125.80196 * 359.97438 * 15 14 12 32 32 H 1.08995 * 109.47264 * 240.03251 * 18 17 16 33 33 H 0.96710 * 113.99487 * 180.02562 * 19 18 17 34 34 H 1.48499 * 110.00173 * 59.99834 * 20 18 17 35 35 H 1.48506 * 109.99904 * 181.31535 * 20 18 17 36 36 H 1.08000 * 127.02460 * 180.27291 * 21 17 16 37 37 H 1.09002 * 113.60839 * 139.98089 * 22 8 7 38 38 H 1.08996 * 113.62098 * 270.79857 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6289 -0.2761 2.4298 7 6 2.1356 -2.2725 1.6215 8 6 3.3793 -2.2334 2.5253 9 1 4.1160 -3.0015 2.2900 10 6 3.0503 -2.1631 4.0178 11 7 2.8832 -3.5196 4.5455 12 6 2.5877 -3.7045 5.8473 13 8 2.4593 -2.7455 6.5839 14 6 2.4202 -5.0691 6.3783 15 6 2.5308 -6.2413 5.6893 16 8 2.3054 -7.2509 6.5357 17 6 2.0477 -6.7923 7.7705 18 6 1.7479 -7.6469 8.9751 19 8 2.7276 -7.4044 9.9867 20 14 1.7904 -9.4443 8.4874 21 6 2.1053 -5.4518 7.7625 22 6 3.6946 -0.8648 1.8988 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 2.3197 -2.7198 0.6447 27 1 1.2510 -2.6768 2.1135 28 1 2.1270 -1.6015 4.1603 29 1 3.8635 -1.6654 4.5461 30 1 2.9860 -4.2845 3.9580 31 1 2.7605 -6.3373 4.6385 32 1 0.7589 -7.3981 9.3599 33 1 2.5969 -7.9223 10.7929 34 1 3.1337 -9.7961 7.9610 35 1 1.4651 -10.2964 9.6594 36 1 1.9492 -4.7891 8.6008 37 1 4.0685 -0.1328 2.6147 38 1 4.3061 -0.9271 0.9987 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_13456056.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:17 Heat of formation + Delta-G solvation = -91.170552 kcal Electronic energy + Delta-G solvation = -23665.534266 eV Core-core repulsion = 19798.031672 eV Total energy + Delta-G solvation = -3867.502593 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.70336 -40.95247 -39.79158 -38.08512 -37.99572 -37.04264 -35.58097 -33.95994 -32.06594 -30.43389 -29.31484 -26.82799 -26.65555 -25.62829 -24.06994 -22.24367 -21.17659 -20.21064 -19.66640 -18.89880 -18.72321 -18.39347 -17.36050 -17.18273 -17.11610 -16.90096 -16.87305 -16.25242 -16.06652 -15.78560 -15.68017 -14.90503 -14.67290 -14.19891 -14.11046 -14.05218 -13.95985 -13.91734 -13.72104 -13.58934 -13.22088 -13.20084 -13.05054 -12.81050 -12.71098 -12.13724 -11.96232 -11.61471 -11.57576 -11.30439 -10.97429 -10.89649 -10.66727 -10.19650 -9.74242 -4.91812 -0.90331 0.27164 0.80025 1.19515 1.47000 1.75031 1.84609 1.97565 2.02356 2.25735 2.65537 2.92134 3.29420 3.35011 3.44027 3.49283 3.52328 3.61717 3.62850 3.97590 4.08927 4.16619 4.25839 4.29346 4.39996 4.43202 4.53107 4.60733 4.63800 4.75961 4.90029 4.91887 4.95070 4.96498 4.99194 5.13800 5.23739 5.37575 5.86241 6.47254 6.50434 7.14527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.418 3.582 3 O -0.995 6.995 4 O -0.978 6.978 5 C -0.594 4.594 6 H 0.175 0.825 7 C -0.107 4.107 8 C -0.104 4.104 9 H 0.113 0.887 10 C 0.135 3.865 11 N -0.707 5.707 12 C 0.587 3.413 13 O -0.588 6.588 14 C -0.269 4.269 15 C 0.067 3.933 16 O -0.167 6.167 17 C -0.016 4.016 18 C -0.051 4.051 19 O -0.558 6.558 20 Si 0.788 3.212 21 C -0.152 4.152 22 C -0.113 4.113 23 H 0.148 0.852 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.418 0.582 31 H 0.268 0.732 32 H 0.121 0.879 33 H 0.406 0.594 34 H -0.305 1.305 35 H -0.270 1.270 36 H 0.143 0.857 37 H 0.092 0.908 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.351 -7.179 -1.289 9.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.992 6.992 4 O -0.975 6.975 5 C -0.705 4.705 6 H 0.193 0.807 7 C -0.145 4.145 8 C -0.124 4.124 9 H 0.131 0.869 10 C 0.012 3.988 11 N -0.359 5.359 12 C 0.376 3.624 13 O -0.469 6.469 14 C -0.274 4.274 15 C -0.003 4.003 16 O -0.063 6.063 17 C -0.064 4.064 18 C -0.159 4.159 19 O -0.370 6.370 20 Si 0.691 3.309 21 C -0.172 4.172 22 C -0.152 4.152 23 H 0.166 0.834 24 H 0.148 0.852 25 H 0.173 0.827 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.256 0.744 31 H 0.283 0.717 32 H 0.139 0.861 33 H 0.258 0.742 34 H -0.232 1.232 35 H -0.196 1.196 36 H 0.161 0.839 37 H 0.111 0.889 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.268 -6.828 -1.835 8.258 hybrid contribution 0.149 0.526 1.657 1.745 sum -4.119 -6.302 -0.178 7.531 Atomic orbital electron populations 1.30106 1.22783 1.13777 1.12852 1.07556 0.79714 0.74061 0.77943 1.93544 1.81017 1.37105 1.87528 1.93546 1.80854 1.67452 1.55697 1.31696 1.07522 1.09616 1.21701 0.80692 1.22933 1.00263 0.88876 1.02438 1.22342 0.99296 0.98668 0.92093 0.86910 1.21196 1.01980 0.83130 0.92525 1.45596 1.71390 1.10244 1.08692 1.17446 0.75605 0.87178 0.82180 1.90793 1.53201 1.43682 1.59245 1.21467 1.16521 0.93983 0.95421 1.25376 0.95334 0.82594 0.96979 1.83693 1.67932 1.36830 1.17797 1.21330 1.07223 0.92719 0.85152 1.24175 0.94847 1.11044 0.85792 1.86520 1.52798 1.68859 1.28865 0.93572 0.83441 0.70266 0.83641 1.22536 1.03647 0.94510 0.96501 1.22723 0.91075 0.98659 1.02744 0.83389 0.85238 0.82745 0.86884 0.87214 0.90938 0.92014 0.74371 0.71700 0.86131 0.74203 1.23235 1.19556 0.83876 0.88910 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.31 10.62 113.37 1.20 7.51 16 2 S 2.42 -6.34 5.34 -56.49 -0.30 -6.64 16 3 O -0.99 -7.70 18.10 -127.37 -2.31 -10.00 16 4 O -0.98 -4.51 17.20 -127.37 -2.19 -6.70 16 5 C -0.59 5.08 3.82 31.12 0.12 5.20 16 6 H 0.18 -2.26 7.72 -2.39 -0.02 -2.28 16 7 C -0.11 1.20 7.16 31.12 0.22 1.43 16 8 C -0.10 0.99 3.94 -10.27 -0.04 0.94 16 9 H 0.11 -1.37 8.14 -2.39 -0.02 -1.39 16 10 C 0.14 -0.66 5.35 86.38 0.46 -0.20 16 11 N -0.71 3.63 5.55 -466.42 -2.59 1.04 16 12 C 0.59 2.58 7.81 86.65 0.68 3.26 16 13 O -0.59 -8.71 16.98 -4.05 -0.07 -8.78 16 14 C -0.27 -0.54 6.31 -18.99 -0.12 -0.66 16 15 C 0.07 -0.40 11.61 67.40 0.78 0.38 16 16 O -0.17 0.25 8.89 4.41 0.04 0.28 16 17 C -0.02 -0.03 6.24 24.76 0.15 0.12 16 18 C -0.05 0.11 2.97 71.24 0.21 0.32 16 19 O -0.56 -0.61 12.84 -148.98 -1.91 -2.52 16 20 Si 0.79 -3.15 32.08 68.60 2.20 -0.95 16 21 C -0.15 -0.90 10.87 23.65 0.26 -0.64 16 22 C -0.11 0.71 7.26 31.12 0.23 0.93 16 23 H 0.15 -1.96 8.14 -2.39 -0.02 -1.98 16 24 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 25 H 0.15 -2.26 8.14 -2.39 -0.02 -2.28 16 26 H 0.11 -1.24 7.37 -2.39 -0.02 -1.25 16 27 H 0.11 -1.62 8.10 -2.39 -0.02 -1.64 16 28 H 0.07 -0.29 7.39 -2.39 -0.02 -0.31 16 29 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 30 H 0.42 -5.55 7.44 -92.71 -0.69 -6.24 16 31 H 0.27 -4.86 7.47 -2.91 -0.02 -4.88 16 32 H 0.12 -0.87 7.96 -2.39 -0.02 -0.89 16 33 H 0.41 -3.30 8.74 -74.05 -0.65 -3.94 16 34 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 35 H -0.27 0.37 7.11 99.48 0.71 1.08 16 36 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.09 -0.56 8.10 -2.39 -0.02 -0.57 16 38 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 Total: 0.00 -40.51 342.31 -3.17 -43.68 By element: Atomic # 1 Polarization: -27.80 SS G_CDS: -0.20 Total: -28.00 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 4.16 Total: 18.59 kcal Atomic # 7 Polarization: 3.63 SS G_CDS: -2.59 Total: 1.04 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -6.44 Total: -27.72 kcal Atomic # 14 Polarization: -3.15 SS G_CDS: 2.20 Total: -0.95 kcal Atomic # 16 Polarization: -6.34 SS G_CDS: -0.30 Total: -6.64 kcal Total: -40.51 -3.17 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13456056.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.492 kcal (2) G-P(sol) polarization free energy of solvation -40.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds