Wall clock time and date at job start Tue Mar 9 2021 13:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.37874 * 126.45868 * 2 1 4 4 C 1.46684 * 126.23325 * 0.03426 * 3 2 1 5 5 O 1.21704 * 119.99364 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00352 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99814 * 179.97438 * 6 4 3 8 8 C 1.53009 * 109.46975 * 180.02562 * 7 6 4 9 9 H 1.08995 * 112.84976 * 314.67159 * 8 7 6 10 10 C 1.53782 * 113.61229 * 85.86607 * 8 7 6 11 11 C 1.54043 * 86.98825 * 89.16117 * 10 8 7 12 12 H 1.09006 * 113.69229 * 270.87473 * 11 10 8 13 13 S 1.81396 * 113.62259 * 139.97523 * 11 10 8 14 14 C 1.81405 * 101.92158 * 82.50669 * 13 11 10 15 15 O 1.42096 * 108.58290 * 196.99302 * 13 11 10 16 16 O 1.42097 * 108.57868 * 328.02459 * 13 11 10 17 17 C 1.53776 * 113.61235 * 183.47064 * 8 7 6 18 18 N 1.37644 * 107.53979 * 180.02562 * 3 2 1 19 19 C 1.35534 * 108.64200 * 0.02562 * 18 3 2 20 20 C 1.50705 * 125.56679 * 179.97438 * 19 18 3 21 21 O 1.42894 * 109.47171 * 120.02183 * 20 19 18 22 22 Si 1.86298 * 109.46780 * 0.02562 * 20 19 18 23 23 C 1.35459 * 108.87120 * 0.22643 * 19 18 3 24 24 H 1.08997 * 109.47292 * 90.00097 * 1 2 3 25 25 H 1.09005 * 109.47415 * 210.00036 * 1 2 3 26 26 H 1.09000 * 109.47666 * 329.99992 * 1 2 3 27 27 H 0.97001 * 119.99828 * 0.02562 * 6 4 3 28 28 H 1.09004 * 109.47460 * 300.00027 * 7 6 4 29 29 H 1.09002 * 109.47554 * 60.00269 * 7 6 4 30 30 H 1.09000 * 113.61387 * 203.66448 * 10 8 7 31 31 H 1.08998 * 113.61431 * 334.56636 * 10 8 7 32 32 H 1.09001 * 109.47023 * 59.99982 * 14 13 11 33 33 H 1.08992 * 109.47460 * 180.02562 * 14 13 11 34 34 H 1.09010 * 109.46796 * 300.00516 * 14 13 11 35 35 H 1.09002 * 113.61780 * 25.43341 * 17 8 7 36 36 H 1.09004 * 113.61273 * 156.34116 * 17 8 7 37 37 H 0.97000 * 125.68578 * 180.02562 * 18 3 2 38 38 H 1.09004 * 109.46779 * 240.02506 * 20 19 18 39 39 H 0.96709 * 113.99337 * 180.02562 * 21 20 19 40 40 H 1.48506 * 109.99834 * 60.00830 * 22 20 19 41 41 H 1.48502 * 110.00011 * 181.32094 * 22 20 19 42 42 H 1.08001 * 126.06584 * 179.77714 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.1089 0.0000 4 6 1.8898 2.5093 0.0007 5 8 0.7025 2.7766 0.0018 6 7 2.8036 3.5000 0.0001 7 6 2.3676 4.8985 0.0002 8 6 3.5931 5.8147 -0.0012 9 1 4.3556 5.5028 0.7124 10 6 4.1458 6.1019 -1.4072 11 6 3.1818 7.3026 -1.4524 12 1 2.1960 7.0582 -1.8481 13 16 3.9000 8.7830 -2.2160 14 6 3.6624 8.4463 -3.9826 15 8 3.1072 9.9068 -1.8587 16 8 5.2943 8.8024 -1.9425 17 6 3.2443 7.3100 0.0841 18 7 3.6283 0.6626 -0.0006 19 6 3.6217 -0.6927 -0.0015 20 6 4.8434 -1.5752 -0.0029 21 8 4.8356 -2.4013 1.1630 22 14 6.3752 -0.5149 -0.0024 23 6 2.3379 -1.1246 -0.0066 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 3.7499 3.2869 -0.0012 28 1 1.7684 5.0925 -0.8894 29 1 1.7695 5.0927 0.8906 30 1 5.1980 6.3864 -1.4130 31 1 3.9123 5.3251 -2.1352 32 1 2.5986 8.3310 -4.1906 33 1 4.0594 9.2760 -4.5673 34 1 4.1866 7.5291 -4.2514 35 1 2.2835 7.5079 0.5593 36 1 4.0506 7.9242 0.4853 37 1 4.4190 1.2245 -0.0004 38 1 4.8366 -2.2035 -0.8936 39 1 5.5950 -2.9966 1.2283 40 1 6.3963 0.3464 1.2071 41 1 7.5868 -1.3730 -0.0360 42 1 2.0136 -2.1548 -0.0119 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:21 Heat of formation + Delta-G solvation = -58.186445 kcal Electronic energy + Delta-G solvation = -25898.332003 eV Core-core repulsion = 21974.440751 eV Total energy + Delta-G solvation = -3923.891252 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.59075 -40.94884 -39.71589 -38.01137 -37.96736 -37.05488 -35.69133 -33.59485 -31.76898 -30.73566 -29.52094 -28.28948 -27.16326 -26.81606 -25.19022 -22.38705 -21.54142 -21.04618 -20.18631 -19.84210 -19.28165 -18.76836 -18.60179 -17.29017 -17.05763 -16.96661 -16.83129 -16.54816 -16.18921 -15.86027 -15.40150 -15.18733 -14.97591 -14.61350 -14.39945 -14.27435 -14.18507 -14.08377 -13.92124 -13.87252 -13.63962 -13.45917 -13.37038 -13.19889 -13.05105 -13.02302 -12.87418 -12.60006 -12.15073 -12.10610 -11.93293 -11.87451 -11.23153 -10.97902 -10.74951 -10.28894 -9.76259 -9.13018 -5.36588 -1.08533 0.32773 0.90011 1.23172 1.54655 1.62125 1.63946 1.86286 1.96670 2.35950 2.43479 2.67457 3.01136 3.15789 3.18098 3.25442 3.31868 3.59014 3.72939 3.76606 3.82098 3.95446 4.10862 4.11945 4.26542 4.28561 4.30812 4.32091 4.52636 4.55145 4.59153 4.62459 4.70543 4.79223 4.93455 4.95762 5.04169 5.18725 5.27020 5.48415 5.69501 5.93513 6.13325 6.26426 6.38069 7.09706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.066 4.066 3 C -0.053 4.053 4 C 0.592 3.408 5 O -0.520 6.520 6 N -0.734 5.734 7 C 0.137 3.863 8 C -0.116 4.116 9 H 0.096 0.904 10 C -0.112 4.112 11 C -0.609 4.609 12 H 0.154 0.846 13 S 2.424 3.576 14 C -0.655 4.655 15 O -0.938 6.938 16 O -0.936 6.936 17 C -0.096 4.096 18 N -0.535 5.535 19 C 0.063 3.937 20 C -0.047 4.047 21 O -0.528 6.528 22 Si 0.662 3.338 23 C -0.171 4.171 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.395 0.605 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.411 0.589 38 H 0.092 0.908 39 H 0.385 0.615 40 H -0.248 1.248 41 H -0.247 1.247 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -3.284 -3.915 6.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.165 4.165 4 C 0.380 3.620 5 O -0.395 6.395 6 N -0.386 5.386 7 C 0.014 3.986 8 C -0.136 4.136 9 H 0.114 0.886 10 C -0.150 4.150 11 C -0.718 4.718 12 H 0.172 0.828 13 S 2.606 3.394 14 C -0.804 4.804 15 O -0.935 6.935 16 O -0.933 6.933 17 C -0.135 4.135 18 N -0.136 5.136 19 C -0.053 4.053 20 C -0.158 4.158 21 O -0.335 6.335 22 Si 0.561 3.439 23 C -0.196 4.196 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.229 0.771 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.250 0.750 38 H 0.110 0.890 39 H 0.233 0.767 40 H -0.173 1.173 41 H -0.171 1.171 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.603 -1.648 -2.994 4.966 hybrid contribution 0.728 -1.660 0.078 1.814 sum 4.331 -3.308 -2.917 6.181 Atomic orbital electron populations 1.20388 0.88880 1.03216 1.02502 1.20028 0.96084 0.90486 1.00916 1.20099 0.83175 0.93415 1.19827 1.16984 0.85780 0.82874 0.76369 1.90855 1.15849 1.83123 1.49715 1.45841 1.09414 1.06358 1.76982 1.21186 0.95346 0.78701 1.03391 1.22477 0.97937 0.95141 0.98054 0.88610 1.22899 0.98684 0.95212 0.98245 1.31826 1.12219 1.18415 1.09344 0.82804 1.07793 0.75909 0.77151 0.78547 1.30238 1.11942 1.12450 1.25793 1.93617 1.71501 1.46659 1.81703 1.93607 1.29798 1.86395 1.83521 1.22571 1.04520 0.96439 0.89933 1.41888 1.07129 1.06179 1.58358 1.19416 0.95791 0.82135 1.07963 1.24083 1.02935 0.97560 0.91190 1.86615 1.49162 1.54939 1.42832 0.95874 0.76310 0.84121 0.87592 1.20614 0.90487 0.99120 1.09329 0.91190 0.91687 0.90055 0.77149 0.90580 0.90356 0.87148 0.89236 0.85302 0.85224 0.85266 0.88700 0.88114 0.74986 0.89045 0.76663 1.17272 1.17069 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.19 9.83 36.00 0.35 0.16 16 2 C -0.07 -0.17 6.21 -104.16 -0.65 -0.81 16 3 C -0.05 -0.08 7.06 -81.98 -0.58 -0.66 16 4 C 0.59 1.00 7.79 -12.85 -0.10 0.90 16 5 O -0.52 -2.62 14.80 5.19 0.08 -2.54 16 6 N -0.73 1.44 5.55 -61.61 -0.34 1.09 16 7 C 0.14 -0.33 5.35 -4.04 -0.02 -0.35 16 8 C -0.12 0.48 3.94 -89.80 -0.35 0.13 16 9 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 10 C -0.11 0.54 7.18 -25.78 -0.19 0.36 16 11 C -0.61 2.53 3.82 -25.78 -0.10 2.43 16 12 H 0.15 -0.93 7.70 -51.93 -0.40 -1.33 16 13 S 2.42 -4.43 5.34 -107.50 -0.57 -5.00 16 14 C -0.65 2.91 10.62 101.05 1.07 3.98 16 15 O -0.94 -2.55 18.10 -57.83 -1.05 -3.60 16 16 O -0.94 -1.46 17.19 -57.83 -0.99 -2.45 16 17 C -0.10 0.32 7.26 -25.92 -0.19 0.13 16 18 N -0.53 0.53 5.47 -5.69 -0.03 0.49 16 19 C 0.06 0.01 6.15 -81.95 -0.50 -0.49 16 20 C -0.05 0.09 2.98 36.01 0.11 0.20 16 21 O -0.53 0.23 12.85 -35.23 -0.45 -0.23 16 22 Si 0.66 -2.26 30.96 -169.99 -5.26 -7.52 16 23 C -0.17 -0.29 10.64 -39.98 -0.43 -0.72 16 24 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 26 H 0.08 0.29 6.48 -51.93 -0.34 -0.05 16 27 H 0.40 -1.86 7.60 -40.82 -0.31 -2.17 16 28 H 0.08 -0.16 7.37 -51.93 -0.38 -0.55 16 29 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.11 -0.53 7.37 -51.93 -0.38 -0.91 16 31 H 0.09 -0.54 8.10 -51.93 -0.42 -0.96 16 32 H 0.13 -0.75 8.14 -51.92 -0.42 -1.17 16 33 H 0.13 -0.55 8.14 -51.93 -0.42 -0.97 16 34 H 0.13 -0.80 8.14 -51.92 -0.42 -1.23 16 35 H 0.09 -0.34 8.10 -51.93 -0.42 -0.76 16 36 H 0.10 -0.33 8.10 -51.93 -0.42 -0.76 16 37 H 0.41 -1.67 5.98 -40.82 -0.24 -1.91 16 38 H 0.09 -0.34 7.96 -51.93 -0.41 -0.76 16 39 H 0.38 -1.77 8.74 45.56 0.40 -1.37 16 40 H -0.25 0.14 7.11 56.52 0.40 0.54 16 41 H -0.25 0.29 7.11 56.52 0.40 0.69 16 42 H 0.15 0.13 8.06 -52.49 -0.42 -0.29 16 LS Contribution 361.85 15.07 5.45 5.45 Total: 0.00 -14.42 361.85 -10.65 -25.08 By element: Atomic # 1 Polarization: -10.13 SS G_CDS: -5.91 Total: -16.04 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.57 Total: 5.27 kcal Atomic # 7 Polarization: 1.96 SS G_CDS: -0.37 Total: 1.59 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -2.42 Total: -8.82 kcal Atomic # 14 Polarization: -2.26 SS G_CDS: -5.26 Total: -7.52 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -0.57 Total: -5.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -14.42 -10.65 -25.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.110 kcal (2) G-P(sol) polarization free energy of solvation -14.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds