Wall clock time and date at job start Tue Mar 9 2021 13:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57481 * 2 1 4 4 O 1.42088 * 108.57903 * 228.97260 * 2 1 3 5 5 C 1.81403 * 101.91946 * 114.48233 * 2 1 3 6 6 H 1.08997 * 112.84986 * 311.19961 * 5 2 1 7 7 C 1.53789 * 113.60983 * 82.50650 * 5 2 1 8 8 C 1.53785 * 87.07814 * 139.98050 * 7 5 2 9 9 H 1.09004 * 113.68708 * 220.00428 * 8 7 5 10 10 C 1.52998 * 113.61549 * 89.11519 * 8 7 5 11 11 N 1.46503 * 109.47159 * 87.50167 * 10 8 7 12 12 C 1.34771 * 119.99977 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00336 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47343 * 179.97438 * 14 12 11 16 16 C 1.34845 * 125.89063 * 84.97963 * 15 14 12 17 17 C 1.40892 * 107.41758 * 180.02562 * 16 15 14 18 18 C 1.34848 * 107.41604 * 359.97438 * 17 16 15 19 19 C 1.50706 * 125.88717 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.46818 * 120.02695 * 19 18 17 21 21 Si 1.86295 * 109.47320 * 0.02562 * 19 18 17 22 22 N 1.36335 * 108.21723 * 0.26451 * 18 17 16 23 23 C 1.53777 * 113.61381 * 179.97438 * 5 2 1 24 24 H 1.09000 * 109.46877 * 305.51623 * 1 2 3 25 25 H 1.08998 * 109.46912 * 65.51104 * 1 2 3 26 26 H 1.08999 * 109.46822 * 185.51626 * 1 2 3 27 27 H 1.08997 * 113.61608 * 25.43112 * 7 5 2 28 28 H 1.09006 * 113.60919 * 254.52295 * 7 5 2 29 29 H 1.09002 * 109.47333 * 327.50097 * 10 8 7 30 30 H 1.08991 * 109.47167 * 207.49884 * 10 8 7 31 31 H 0.97003 * 119.99963 * 359.97438 * 11 10 8 32 32 H 1.09002 * 109.46671 * 59.99711 * 14 12 11 33 33 H 1.09004 * 109.47066 * 300.00355 * 14 12 11 34 34 H 1.08002 * 126.29457 * 359.97438 * 16 15 14 35 35 H 1.08004 * 126.28834 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46950 * 240.02210 * 19 18 17 37 37 H 0.96695 * 114.00065 * 179.97438 * 20 19 18 38 38 H 1.48504 * 110.00094 * 298.68001 * 21 19 18 39 39 H 1.48502 * 109.99822 * 59.99886 * 21 19 18 40 40 H 0.97007 * 125.63051 * 179.73923 * 22 18 17 41 41 H 1.09000 * 113.61684 * 105.47045 * 23 5 2 42 42 H 1.08999 * 113.61650 * 334.57227 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0160 5 6 2.1887 -0.7355 1.6153 6 1 1.6288 -0.2760 2.4298 7 6 2.1361 -2.2725 1.6194 8 6 3.3796 -2.2343 2.5234 9 1 4.1166 -3.0019 2.2871 10 6 3.0503 -2.1662 4.0160 11 7 2.8836 -3.5235 4.5417 12 6 2.5869 -3.7103 5.8430 13 8 2.4584 -2.7550 6.5790 14 6 2.4148 -5.1065 6.3837 15 6 2.0906 -5.0394 7.8539 16 6 0.8632 -4.8693 8.3858 17 6 1.0079 -4.8643 9.7872 18 6 2.3182 -5.0322 10.0583 19 6 2.9357 -5.0906 11.4318 20 8 3.5874 -6.3501 11.6078 21 14 1.6044 -4.8948 12.7202 22 7 2.9884 -5.1347 8.8755 23 6 3.6945 -0.8653 1.8987 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 2.3204 -2.7183 0.6419 28 1 1.2514 -2.6778 2.1106 29 1 2.1268 -1.6051 4.1592 30 1 3.8632 -1.6691 4.5451 31 1 2.9859 -4.2876 3.9530 32 1 3.3382 -5.6677 6.2408 33 1 1.6019 -5.6035 5.8543 34 1 -0.0608 -4.7566 7.8382 35 1 0.2150 -4.7483 10.5113 36 1 3.6643 -4.2867 11.5370 37 1 4.0086 -6.4577 12.4715 38 1 0.9403 -3.5752 12.5678 39 1 0.6048 -5.9848 12.5873 40 1 3.9456 -5.2574 8.7772 41 1 4.0686 -0.1342 2.6155 42 1 4.3048 -0.9265 0.9977 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:25 Heat of formation + Delta-G solvation = -59.274047 kcal Electronic energy + Delta-G solvation = -25308.552291 eV Core-core repulsion = 21384.613878 eV Total energy + Delta-G solvation = -3923.938414 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.30902 -41.07833 -39.93852 -38.01323 -37.68343 -37.06048 -35.51808 -33.30052 -31.90250 -30.76320 -30.18016 -28.72466 -27.14471 -25.67385 -24.67462 -21.96819 -21.30748 -21.15479 -20.54264 -19.83213 -18.63504 -18.46521 -18.20837 -18.01153 -17.28727 -17.02268 -16.86893 -16.58689 -16.05108 -15.80152 -15.28893 -15.16993 -14.84856 -14.76521 -14.43233 -14.32983 -14.28184 -14.16577 -14.07954 -13.91321 -13.61113 -13.33965 -13.27481 -13.19052 -13.05249 -12.92132 -12.78178 -12.47326 -12.10850 -11.93036 -11.90185 -11.86771 -11.22915 -10.93418 -10.46003 -10.21831 -9.74578 -8.90782 -4.97154 -1.08924 1.10976 1.25817 1.56404 1.61787 1.72551 1.86393 2.07873 2.19564 2.42683 2.45125 2.68268 3.01312 3.18202 3.25709 3.32962 3.37301 3.59230 3.72830 3.80641 3.88063 3.93214 3.97590 3.98160 4.12707 4.28650 4.30806 4.31006 4.31873 4.51498 4.52653 4.55456 4.59003 4.63357 4.69963 4.79089 4.95059 5.25930 5.27397 5.31684 6.02610 6.15972 6.32761 6.52585 6.65316 7.13206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.609 4.609 6 H 0.153 0.847 7 C -0.112 4.112 8 C -0.114 4.114 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.733 5.733 12 C 0.511 3.489 13 O -0.523 6.523 14 C -0.071 4.071 15 C 0.036 3.964 16 C -0.171 4.171 17 C -0.196 4.196 18 C 0.038 3.962 19 C -0.054 4.054 20 O -0.552 6.552 21 Si 0.715 3.285 22 N -0.532 5.532 23 C -0.097 4.097 24 H 0.128 0.872 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.403 0.597 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.071 0.929 37 H 0.384 0.616 38 H -0.254 1.254 39 H -0.250 1.250 40 H 0.414 0.586 41 H 0.093 0.907 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -3.825 2.020 4.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.718 4.718 6 H 0.171 0.829 7 C -0.150 4.150 8 C -0.134 4.134 9 H 0.115 0.885 10 C 0.012 3.988 11 N -0.386 5.386 12 C 0.296 3.704 13 O -0.397 6.397 14 C -0.111 4.111 15 C -0.078 4.078 16 C -0.196 4.196 17 C -0.221 4.221 18 C -0.076 4.076 19 C -0.163 4.163 20 O -0.358 6.358 21 Si 0.614 3.386 22 N -0.127 5.127 23 C -0.136 4.136 24 H 0.147 0.853 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.237 0.763 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.232 0.768 38 H -0.179 1.179 39 H -0.174 1.174 40 H 0.250 0.750 41 H 0.112 0.888 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.285 -2.782 1.425 3.139 hybrid contribution -0.001 -0.426 -0.394 0.580 sum 0.284 -3.209 1.031 3.382 Atomic orbital electron populations 1.30237 1.26642 1.11631 1.11922 1.07802 0.78477 0.75636 0.77525 1.93616 1.79091 1.34317 1.86470 1.93606 1.79211 1.67160 1.53322 1.31778 1.07697 1.08877 1.23479 0.82881 1.22847 0.99852 0.89912 1.02353 1.22455 0.98477 0.98795 0.93672 0.88516 1.21149 1.02322 0.83825 0.91495 1.45964 1.73264 1.09178 1.10208 1.20620 0.76493 0.91572 0.81709 1.90780 1.48723 1.42913 1.57321 1.20122 1.05099 0.94970 0.90926 1.19435 0.89628 1.10367 0.88339 1.20529 0.96490 1.08905 0.93628 1.20507 0.94111 1.11194 0.96239 1.19661 0.91981 1.10227 0.85711 1.24450 1.05025 0.88596 0.98275 1.86474 1.74527 1.34394 1.40436 0.95385 0.78044 0.80753 0.84372 1.41746 1.09374 1.56706 1.04873 1.22577 0.90491 0.97848 1.02641 0.85316 0.85181 0.85267 0.87166 0.89307 0.90944 0.90774 0.76294 0.88048 0.86380 0.84507 0.84900 0.91102 0.76806 1.17863 1.17397 0.74977 0.88817 0.88110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.61 10.62 101.05 1.07 3.68 16 2 S 2.42 -3.33 5.34 -107.50 -0.57 -3.90 16 3 O -0.94 -2.90 18.10 -57.83 -1.05 -3.95 16 4 O -0.94 -1.88 17.19 -57.83 -0.99 -2.87 16 5 C -0.61 2.23 3.82 -25.92 -0.10 2.13 16 6 H 0.15 -0.83 7.72 -51.93 -0.40 -1.23 16 7 C -0.11 0.48 7.16 -25.91 -0.19 0.30 16 8 C -0.11 0.45 3.94 -89.83 -0.35 0.09 16 9 H 0.10 -0.46 8.14 -51.93 -0.42 -0.89 16 10 C 0.14 -0.30 5.35 -4.04 -0.02 -0.32 16 11 N -0.73 1.92 5.56 -60.30 -0.33 1.59 16 12 C 0.51 0.26 7.82 -10.99 -0.09 0.17 16 13 O -0.52 -2.86 16.03 5.56 0.09 -2.77 16 14 C -0.07 0.11 6.24 -29.04 -0.18 -0.07 16 15 C 0.04 0.08 5.66 -81.79 -0.46 -0.38 16 16 C -0.17 -0.66 10.76 -39.78 -0.43 -1.09 16 17 C -0.20 -0.91 9.37 -39.78 -0.37 -1.28 16 18 C 0.04 0.14 6.54 -81.79 -0.53 -0.40 16 19 C -0.05 -0.04 3.07 36.01 0.11 0.07 16 20 O -0.55 -0.15 12.86 -35.23 -0.45 -0.60 16 21 Si 0.72 -0.35 30.59 -169.99 -5.20 -5.55 16 22 N -0.53 -1.35 6.07 -5.44 -0.03 -1.38 16 23 C -0.10 0.29 7.26 -25.94 -0.19 0.10 16 24 H 0.13 -0.69 8.14 -51.92 -0.42 -1.11 16 25 H 0.13 -0.50 8.14 -51.92 -0.42 -0.92 16 26 H 0.13 -0.74 8.14 -51.92 -0.42 -1.16 16 27 H 0.11 -0.47 7.36 -51.93 -0.38 -0.85 16 28 H 0.09 -0.48 8.10 -51.93 -0.42 -0.90 16 29 H 0.07 -0.10 7.39 -51.93 -0.38 -0.49 16 30 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.40 -2.24 8.47 -40.82 -0.35 -2.58 16 32 H 0.10 -0.39 8.14 -51.93 -0.42 -0.82 16 33 H 0.12 -0.45 8.14 -51.93 -0.42 -0.87 16 34 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 35 H 0.13 0.53 6.22 -52.48 -0.33 0.20 16 36 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 37 H 0.38 -1.88 8.74 45.56 0.40 -1.48 16 38 H -0.25 -0.61 7.11 56.52 0.40 -0.21 16 39 H -0.25 -0.69 7.11 56.52 0.40 -0.29 16 40 H 0.41 0.15 8.96 -40.82 -0.37 -0.21 16 41 H 0.09 -0.30 8.10 -51.93 -0.42 -0.72 16 42 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 LS Contribution 365.74 15.07 5.51 5.51 Total: 0.00 -16.40 365.74 -10.83 -27.22 By element: Atomic # 1 Polarization: -10.25 SS G_CDS: -6.06 Total: -16.31 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -1.73 Total: 3.01 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -0.37 Total: 0.21 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -2.40 Total: -10.19 kcal Atomic # 14 Polarization: -0.35 SS G_CDS: -5.20 Total: -5.55 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -0.57 Total: -3.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -16.40 -10.83 -27.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.050 kcal (2) G-P(sol) polarization free energy of solvation -16.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds