Wall clock time and date at job start Tue Mar 9 2021 13:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 108.57481 * 2 1 4 4 O 1.42088 * 108.57903 * 228.97260 * 2 1 3 5 5 C 1.81403 * 101.91946 * 114.48233 * 2 1 3 6 6 H 1.08997 * 112.84986 * 311.19961 * 5 2 1 7 7 C 1.53789 * 113.60983 * 82.50650 * 5 2 1 8 8 C 1.53785 * 87.07814 * 139.98050 * 7 5 2 9 9 H 1.09004 * 113.68708 * 220.00428 * 8 7 5 10 10 C 1.52998 * 113.61549 * 89.11519 * 8 7 5 11 11 N 1.46503 * 109.47159 * 87.50167 * 10 8 7 12 12 C 1.34771 * 119.99977 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00336 * 359.97438 * 12 11 10 14 14 C 1.50702 * 120.00253 * 179.97438 * 12 11 10 15 15 C 1.50696 * 109.47343 * 179.97438 * 14 12 11 16 16 C 1.34845 * 125.89063 * 84.97963 * 15 14 12 17 17 C 1.40892 * 107.41758 * 180.02562 * 16 15 14 18 18 C 1.34848 * 107.41604 * 359.97438 * 17 16 15 19 19 C 1.50706 * 125.88717 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.46818 * 120.02695 * 19 18 17 21 21 Si 1.86295 * 109.47320 * 0.02562 * 19 18 17 22 22 N 1.36335 * 108.21723 * 0.26451 * 18 17 16 23 23 C 1.53777 * 113.61381 * 179.97438 * 5 2 1 24 24 H 1.09000 * 109.46877 * 305.51623 * 1 2 3 25 25 H 1.08998 * 109.46912 * 65.51104 * 1 2 3 26 26 H 1.08999 * 109.46822 * 185.51626 * 1 2 3 27 27 H 1.08997 * 113.61608 * 25.43112 * 7 5 2 28 28 H 1.09006 * 113.60919 * 254.52295 * 7 5 2 29 29 H 1.09002 * 109.47333 * 327.50097 * 10 8 7 30 30 H 1.08991 * 109.47167 * 207.49884 * 10 8 7 31 31 H 0.97003 * 119.99963 * 359.97438 * 11 10 8 32 32 H 1.09002 * 109.46671 * 59.99711 * 14 12 11 33 33 H 1.09004 * 109.47066 * 300.00355 * 14 12 11 34 34 H 1.08002 * 126.29457 * 359.97438 * 16 15 14 35 35 H 1.08004 * 126.28834 * 180.02562 * 17 16 15 36 36 H 1.09004 * 109.46950 * 240.02210 * 19 18 17 37 37 H 0.96695 * 114.00065 * 179.97438 * 20 19 18 38 38 H 1.48504 * 110.00094 * 298.68001 * 21 19 18 39 39 H 1.48502 * 109.99822 * 59.99886 * 21 19 18 40 40 H 0.97007 * 125.63051 * 179.73923 * 22 18 17 41 41 H 1.09000 * 113.61684 * 105.47045 * 23 5 2 42 42 H 1.08999 * 113.61650 * 334.57227 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0160 5 6 2.1887 -0.7355 1.6153 6 1 1.6288 -0.2760 2.4298 7 6 2.1361 -2.2725 1.6194 8 6 3.3796 -2.2343 2.5234 9 1 4.1166 -3.0019 2.2871 10 6 3.0503 -2.1662 4.0160 11 7 2.8836 -3.5235 4.5417 12 6 2.5869 -3.7103 5.8430 13 8 2.4584 -2.7550 6.5790 14 6 2.4148 -5.1065 6.3837 15 6 2.0906 -5.0394 7.8539 16 6 0.8632 -4.8693 8.3858 17 6 1.0079 -4.8643 9.7872 18 6 2.3182 -5.0322 10.0583 19 6 2.9357 -5.0906 11.4318 20 8 3.5874 -6.3501 11.6078 21 14 1.6044 -4.8948 12.7202 22 7 2.9884 -5.1347 8.8755 23 6 3.6945 -0.8653 1.8987 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 2.3204 -2.7183 0.6419 28 1 1.2514 -2.6778 2.1106 29 1 2.1268 -1.6051 4.1592 30 1 3.8632 -1.6691 4.5451 31 1 2.9859 -4.2876 3.9530 32 1 3.3382 -5.6677 6.2408 33 1 1.6019 -5.6035 5.8543 34 1 -0.0608 -4.7566 7.8382 35 1 0.2150 -4.7483 10.5113 36 1 3.6643 -4.2867 11.5370 37 1 4.0086 -6.4577 12.4715 38 1 0.9403 -3.5752 12.5678 39 1 0.6048 -5.9848 12.5873 40 1 3.9456 -5.2574 8.7772 41 1 4.0686 -0.1342 2.6155 42 1 4.3048 -0.9265 0.9977 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:24 Heat of formation + Delta-G solvation = -71.150882 kcal Electronic energy + Delta-G solvation = -25309.067310 eV Core-core repulsion = 21384.613878 eV Total energy + Delta-G solvation = -3924.453432 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44685 -40.95778 -39.85185 -38.03300 -37.66964 -37.08011 -35.47693 -33.31646 -32.09791 -30.50875 -30.13335 -28.60402 -26.85113 -25.57812 -24.64712 -21.98679 -21.50429 -21.21582 -20.40009 -19.68800 -18.49392 -18.44218 -18.21015 -17.97501 -17.16244 -16.92993 -16.79544 -16.54604 -15.90442 -15.81949 -15.21933 -15.16755 -14.97957 -14.80232 -14.37442 -14.26309 -14.13002 -13.99642 -13.94940 -13.63670 -13.53880 -13.44565 -13.24087 -13.17066 -13.08754 -12.89319 -12.71743 -12.54275 -12.05708 -11.99647 -11.64514 -11.59197 -11.14689 -10.88860 -10.45479 -10.13846 -9.97022 -9.07694 -4.98673 -0.93970 0.97426 1.23870 1.58463 1.66909 1.73546 1.81179 2.03915 2.19438 2.39647 2.61817 2.88611 3.26198 3.40496 3.41222 3.49583 3.60075 3.61783 3.90295 4.01892 4.05521 4.13806 4.14619 4.23609 4.25133 4.32210 4.38255 4.56209 4.57079 4.59953 4.64986 4.72581 4.87840 4.91253 4.93254 4.95571 5.05479 5.12332 5.22420 5.41769 5.83179 5.95977 6.48613 6.58916 6.83842 7.22869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.418 3.582 3 O -0.994 6.994 4 O -0.978 6.978 5 C -0.594 4.594 6 H 0.174 0.826 7 C -0.108 4.108 8 C -0.103 4.103 9 H 0.111 0.889 10 C 0.136 3.864 11 N -0.714 5.714 12 C 0.511 3.489 13 O -0.580 6.580 14 C -0.066 4.066 15 C 0.038 3.962 16 C -0.201 4.201 17 C -0.229 4.229 18 C 0.019 3.981 19 C -0.060 4.060 20 O -0.566 6.566 21 Si 0.816 3.184 22 N -0.531 5.531 23 C -0.113 4.113 24 H 0.148 0.852 25 H 0.130 0.870 26 H 0.153 0.847 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.420 0.580 32 H 0.132 0.868 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.406 0.594 38 H -0.297 1.297 39 H -0.298 1.298 40 H 0.423 0.577 41 H 0.092 0.908 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -5.273 1.938 5.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.607 3.393 3 O -0.991 6.991 4 O -0.975 6.975 5 C -0.705 4.705 6 H 0.192 0.808 7 C -0.146 4.146 8 C -0.123 4.123 9 H 0.129 0.871 10 C 0.012 3.988 11 N -0.367 5.367 12 C 0.298 3.702 13 O -0.459 6.459 14 C -0.106 4.106 15 C -0.076 4.076 16 C -0.225 4.225 17 C -0.254 4.254 18 C -0.095 4.095 19 C -0.169 4.169 20 O -0.376 6.376 21 Si 0.721 3.279 22 N -0.127 5.127 23 C -0.152 4.152 24 H 0.166 0.834 25 H 0.148 0.852 26 H 0.172 0.828 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.150 0.850 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.258 0.742 38 H -0.225 1.225 39 H -0.226 1.226 40 H 0.261 0.739 41 H 0.111 0.889 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.615 -4.254 1.288 4.487 hybrid contribution -0.145 0.002 -0.363 0.391 sum 0.470 -4.252 0.925 4.377 Atomic orbital electron populations 1.30109 1.22814 1.13730 1.12883 1.07556 0.79713 0.74074 0.77938 1.93543 1.81002 1.37050 1.87514 1.93545 1.80844 1.67459 1.55678 1.31687 1.07578 1.09556 1.21689 0.80802 1.22924 1.00346 0.88888 1.02434 1.22335 0.99107 0.98466 0.92412 0.87071 1.21113 1.01556 0.83840 0.92318 1.45813 1.71607 1.09802 1.09526 1.20931 0.75579 0.91625 0.82089 1.90767 1.51596 1.44690 1.58863 1.20269 1.07686 0.94226 0.88395 1.19978 0.89071 1.08408 0.90119 1.20792 0.97764 1.10373 0.93609 1.20710 0.94846 1.12852 0.96969 1.20136 0.92074 1.09974 0.87353 1.24576 1.05935 0.89472 0.96877 1.86418 1.74709 1.33955 1.42501 0.94453 0.75394 0.75753 0.82316 1.41851 1.09942 1.56170 1.04690 1.22719 0.91005 0.98747 1.02738 0.83401 0.85168 0.82827 0.87048 0.87380 0.91488 0.92266 0.74200 0.84989 0.83586 0.83911 0.85659 0.89292 0.74187 1.22539 1.22569 0.73851 0.88920 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 5.88 10.62 113.37 1.20 7.08 16 2 S 2.42 -4.92 5.34 -56.49 -0.30 -5.22 16 3 O -0.99 -8.09 18.10 -127.37 -2.30 -10.40 16 4 O -0.98 -5.09 17.19 -127.37 -2.19 -7.28 16 5 C -0.59 4.70 3.82 31.12 0.12 4.82 16 6 H 0.17 -2.11 7.72 -2.39 -0.02 -2.13 16 7 C -0.11 1.12 7.16 31.12 0.22 1.34 16 8 C -0.10 0.94 3.94 -10.28 -0.04 0.90 16 9 H 0.11 -1.28 8.14 -2.38 -0.02 -1.30 16 10 C 0.14 -0.72 5.35 86.38 0.46 -0.26 16 11 N -0.71 4.99 5.56 -463.07 -2.57 2.42 16 12 C 0.51 0.01 7.82 87.66 0.69 0.69 16 13 O -0.58 -6.63 16.03 -3.04 -0.05 -6.68 16 14 C -0.07 0.32 6.24 29.10 0.18 0.50 16 15 C 0.04 0.18 5.66 41.08 0.23 0.41 16 16 C -0.20 -1.79 10.76 22.14 0.24 -1.55 16 17 C -0.23 -2.56 9.37 22.14 0.21 -2.35 16 18 C 0.02 0.15 6.54 41.08 0.27 0.42 16 19 C -0.06 -0.08 3.07 71.24 0.22 0.14 16 20 O -0.57 0.15 12.86 -148.98 -1.92 -1.77 16 21 Si 0.82 -0.08 30.59 68.60 2.10 2.02 16 22 N -0.53 -2.68 6.07 -171.13 -1.04 -3.72 16 23 C -0.11 0.66 7.26 31.10 0.23 0.89 16 24 H 0.15 -1.86 8.14 -2.39 -0.02 -1.88 16 25 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 26 H 0.15 -2.12 8.14 -2.39 -0.02 -2.14 16 27 H 0.11 -1.09 7.36 -2.39 -0.02 -1.11 16 28 H 0.11 -1.48 8.10 -2.38 -0.02 -1.50 16 29 H 0.07 -0.25 7.39 -2.39 -0.02 -0.26 16 30 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.42 -5.86 8.47 -92.71 -0.79 -6.65 16 32 H 0.13 -1.44 8.14 -2.39 -0.02 -1.46 16 33 H 0.15 -1.52 8.14 -2.39 -0.02 -1.54 16 34 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.13 1.37 6.22 -2.91 -0.02 1.35 16 36 H 0.09 -0.21 7.96 -2.39 -0.02 -0.23 16 37 H 0.41 -4.55 8.74 -74.06 -0.65 -5.20 16 38 H -0.30 -2.04 7.11 99.48 0.71 -1.34 16 39 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 40 H 0.42 0.06 8.96 -92.70 -0.83 -0.77 16 41 H 0.09 -0.53 8.10 -2.39 -0.02 -0.55 16 42 H 0.10 -0.50 8.10 -2.39 -0.02 -0.52 16 Total: 0.00 -41.57 365.74 -5.21 -46.78 By element: Atomic # 1 Polarization: -28.03 SS G_CDS: -1.16 Total: -29.19 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 4.23 Total: 13.03 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -3.61 Total: -1.30 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -6.46 Total: -26.12 kcal Atomic # 14 Polarization: -0.08 SS G_CDS: 2.10 Total: 2.02 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -0.30 Total: -5.22 kcal Total: -41.57 -5.21 -46.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.375 kcal (2) G-P(sol) polarization free energy of solvation -41.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds