Wall clock time and date at job start Tue Mar 9 2021 13:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 108.57823 * 2 1 4 4 O 1.42105 * 108.57923 * 228.97694 * 2 1 3 5 5 C 1.81400 * 101.92028 * 114.49099 * 2 1 3 6 6 H 1.08996 * 112.84816 * 311.19801 * 5 2 1 7 7 C 1.53781 * 113.61538 * 82.50399 * 5 2 1 8 8 C 1.53781 * 87.07978 * 139.97972 * 7 5 2 9 9 H 1.08998 * 113.68702 * 220.00390 * 8 7 5 10 10 C 1.53000 * 113.61434 * 89.11587 * 8 7 5 11 11 N 1.46507 * 109.47072 * 87.50037 * 10 8 7 12 12 C 1.34772 * 120.00026 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99809 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00255 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47300 * 179.97438 * 14 12 11 16 16 O 1.42901 * 109.47055 * 179.97438 * 15 14 12 17 17 C 1.35897 * 117.00083 * 180.02562 * 16 15 14 18 18 C 1.38738 * 120.05494 * 0.31613 * 17 16 15 19 19 C 1.38141 * 119.94395 * 180.25974 * 18 17 16 20 20 C 1.38274 * 120.05552 * 359.44290 * 19 18 17 21 21 C 1.50696 * 119.94301 * 180.27916 * 20 19 18 22 22 O 1.42901 * 109.47185 * 65.00307 * 21 20 19 23 23 Si 1.86301 * 109.46880 * 185.00271 * 21 20 19 24 24 C 1.38260 * 120.11026 * 0.25933 * 20 19 18 25 25 C 1.38149 * 120.05668 * 0.02562 * 24 20 19 26 26 C 1.53774 * 87.08004 * 334.56600 * 8 7 5 27 27 H 1.08999 * 109.47302 * 305.51010 * 1 2 3 28 28 H 1.09007 * 109.46894 * 65.51199 * 1 2 3 29 29 H 1.08999 * 109.47171 * 185.50436 * 1 2 3 30 30 H 1.09003 * 113.61322 * 25.43258 * 7 5 2 31 31 H 1.09004 * 113.60990 * 254.53059 * 7 5 2 32 32 H 1.09001 * 109.47027 * 327.50660 * 10 8 7 33 33 H 1.08994 * 109.47321 * 207.49715 * 10 8 7 34 34 H 0.97003 * 119.99956 * 359.97438 * 11 10 8 35 35 H 1.08999 * 109.47008 * 59.99288 * 14 12 11 36 36 H 1.09000 * 109.47257 * 299.99833 * 14 12 11 37 37 H 1.09001 * 109.47027 * 60.00527 * 15 14 12 38 38 H 1.08994 * 109.46873 * 299.99875 * 15 14 12 39 39 H 1.07998 * 120.02566 * 359.97438 * 18 17 16 40 40 H 1.08002 * 119.97550 * 179.72852 * 19 18 17 41 41 H 1.08998 * 109.47404 * 304.99778 * 21 20 19 42 42 H 0.96696 * 114.00119 * 179.97438 * 22 21 20 43 43 H 1.48503 * 110.00048 * 299.99858 * 23 21 20 44 44 H 1.48497 * 110.00195 * 61.31776 * 23 21 20 45 45 H 1.07997 * 119.97485 * 180.02562 * 24 20 19 46 46 H 1.07997 * 120.02837 * 180.02562 * 25 24 20 47 47 H 1.09006 * 113.61438 * 139.98186 * 26 8 7 48 48 H 1.09001 * 113.61716 * 270.88018 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7358 1.6152 6 1 1.6288 -0.2763 2.4297 7 6 2.1361 -2.2727 1.6191 8 6 3.3796 -2.2345 2.5231 9 1 4.1165 -3.0021 2.2868 10 6 3.0503 -2.1666 4.0157 11 7 2.8835 -3.5239 4.5413 12 6 2.5869 -3.7109 5.8426 13 8 2.4585 -2.7555 6.5787 14 6 2.4159 -5.1071 6.3835 15 6 2.0866 -5.0391 7.8760 16 8 1.9238 -6.3630 8.3887 17 6 1.6253 -6.4809 9.7092 18 6 1.4853 -5.3455 10.4940 19 6 1.1872 -5.4682 11.8373 20 6 1.0169 -6.7209 12.3973 21 6 0.6855 -6.8516 13.8615 22 8 -0.6015 -6.2830 14.1112 23 14 0.6714 -8.6530 14.3366 24 6 1.1498 -7.8538 11.6159 25 6 1.4537 -7.7367 10.2734 26 6 3.6946 -0.8650 1.8988 27 1 -0.3634 0.5969 0.8365 28 1 -0.3633 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0986 30 1 2.3204 -2.7184 0.6416 31 1 1.2514 -2.6780 2.1103 32 1 2.1268 -1.6055 4.1589 33 1 3.8633 -1.6695 4.5449 34 1 2.9859 -4.2880 3.9525 35 1 3.3397 -5.6677 6.2407 36 1 1.6034 -5.6048 5.8541 37 1 1.1628 -4.4784 8.0191 38 1 2.8993 -4.5416 8.4051 39 1 1.6139 -4.3667 10.0562 40 1 1.0824 -4.5847 12.4497 41 1 1.4358 -6.3260 14.4522 42 1 -0.8807 -6.3324 15.0357 43 1 -0.3475 -9.3808 13.5383 44 1 2.0131 -9.2482 14.1116 45 1 1.0160 -8.8312 12.0555 46 1 1.5570 -8.6219 9.6634 47 1 4.0681 -0.1338 2.6157 48 1 4.3050 -0.9258 0.9978 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:49 Heat of formation + Delta-G solvation = -123.862600 kcal Electronic energy + Delta-G solvation = -29778.297440 eV Core-core repulsion = 25314.538216 eV Total energy + Delta-G solvation = -4463.759224 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.50953 -41.04587 -40.01495 -39.13102 -38.03614 -37.26062 -37.08251 -35.55179 -33.47865 -32.27195 -31.66552 -30.47215 -29.32466 -26.87275 -26.62042 -25.81124 -24.81710 -23.52927 -22.17347 -21.56724 -20.40745 -19.73656 -19.52424 -18.47628 -18.37021 -17.83182 -17.56635 -17.35467 -17.15861 -16.93428 -16.84971 -16.73850 -16.31192 -16.17453 -15.78046 -15.32071 -15.07522 -14.82805 -14.70742 -14.30559 -14.24625 -14.12579 -14.03378 -13.96284 -13.85500 -13.78228 -13.63805 -13.28642 -13.24371 -13.09149 -13.02422 -12.87827 -12.71734 -12.37274 -12.03390 -12.00020 -11.93436 -11.80342 -11.65340 -11.60515 -11.19622 -10.90412 -10.28655 -10.21603 -10.18199 -9.32951 -4.93946 -0.94580 0.08315 0.18588 1.31394 1.49403 1.62455 1.65024 1.80683 1.97134 2.40169 2.48868 2.61279 2.87896 3.25476 3.39786 3.43137 3.46798 3.52721 3.58918 3.67665 3.71063 3.84910 3.89016 3.98646 4.05248 4.12274 4.13017 4.17504 4.23136 4.31560 4.37010 4.46396 4.52400 4.56300 4.59008 4.64721 4.70803 4.72447 4.83149 4.86763 4.90358 4.92888 4.95017 5.02184 5.16688 5.20858 5.34243 5.37393 5.53672 6.20010 6.43112 6.91789 7.12517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.416 3.584 3 O -0.993 6.993 4 O -0.979 6.979 5 C -0.593 4.593 6 H 0.176 0.824 7 C -0.109 4.109 8 C -0.105 4.105 9 H 0.110 0.890 10 C 0.134 3.866 11 N -0.713 5.713 12 C 0.519 3.481 13 O -0.585 6.585 14 C -0.132 4.132 15 C 0.071 3.929 16 O -0.318 6.318 17 C 0.125 3.875 18 C -0.209 4.209 19 C -0.058 4.058 20 C -0.130 4.130 21 C -0.076 4.076 22 O -0.566 6.566 23 Si 0.773 3.227 24 C -0.099 4.099 25 C -0.154 4.154 26 C -0.113 4.113 27 H 0.149 0.851 28 H 0.130 0.870 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.420 0.580 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.092 0.908 42 H 0.403 0.597 43 H -0.295 1.295 44 H -0.288 1.288 45 H 0.126 0.874 46 H 0.147 0.853 47 H 0.094 0.906 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -4.041 2.948 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.604 3.396 3 O -0.991 6.991 4 O -0.976 6.976 5 C -0.704 4.704 6 H 0.194 0.806 7 C -0.147 4.147 8 C -0.125 4.125 9 H 0.128 0.872 10 C 0.010 3.990 11 N -0.366 5.366 12 C 0.307 3.693 13 O -0.466 6.466 14 C -0.172 4.172 15 C -0.005 4.005 16 O -0.232 6.232 17 C 0.080 3.920 18 C -0.228 4.228 19 C -0.076 4.076 20 C -0.131 4.131 21 C -0.185 4.185 22 O -0.376 6.376 23 Si 0.680 3.320 24 C -0.117 4.117 25 C -0.172 4.172 26 C -0.152 4.152 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.172 0.828 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.258 0.742 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.110 0.890 42 H 0.254 0.746 43 H -0.223 1.223 44 H -0.215 1.215 45 H 0.143 0.857 46 H 0.165 0.835 47 H 0.113 0.887 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.213 -3.865 1.703 4.394 hybrid contribution -0.256 0.395 -0.225 0.522 sum -1.470 -3.470 1.478 4.048 Atomic orbital electron populations 1.30111 1.22718 1.13761 1.12939 1.07628 0.79790 0.74114 0.78019 1.93544 1.81003 1.37002 1.87517 1.93549 1.80866 1.67467 1.55711 1.31681 1.07597 1.09440 1.21674 0.80607 1.22931 1.00377 0.88990 1.02438 1.22352 0.99081 0.98516 0.92520 0.87178 1.21177 1.01951 0.83560 0.92300 1.45808 1.71160 1.10065 1.09520 1.20572 0.75468 0.90981 0.82314 1.90752 1.52406 1.44698 1.58716 1.21434 1.07533 0.94363 0.93844 1.22500 1.02010 0.81312 0.94634 1.85951 1.84960 1.31094 1.21218 1.19076 0.95510 0.94272 0.83183 1.21554 1.07335 0.98537 0.95354 1.21031 0.94831 0.97554 0.94211 1.19650 1.04075 0.93578 0.95770 1.24784 0.88331 1.11805 0.93614 1.86444 1.33025 1.83417 1.34680 0.94418 0.77187 0.72265 0.88168 1.20861 0.99338 0.97845 0.93648 1.20519 1.05496 0.96242 0.94964 1.22732 0.91005 0.98718 1.02772 0.83272 0.85183 0.82819 0.87169 0.87339 0.91034 0.91786 0.74188 0.85467 0.85305 0.91662 0.91645 0.83996 0.84053 0.88988 0.74616 1.22339 1.21525 0.85650 0.83538 0.88695 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.11 10.62 113.37 1.20 7.31 16 2 S 2.42 -5.41 5.34 -56.49 -0.30 -5.71 16 3 O -0.99 -7.81 18.10 -127.37 -2.30 -10.12 16 4 O -0.98 -5.07 17.19 -127.37 -2.19 -7.26 16 5 C -0.59 4.99 3.82 31.12 0.12 5.11 16 6 H 0.18 -2.30 7.72 -2.39 -0.02 -2.32 16 7 C -0.11 1.16 7.16 31.12 0.22 1.38 16 8 C -0.10 0.99 3.94 -10.27 -0.04 0.95 16 9 H 0.11 -1.27 8.14 -2.39 -0.02 -1.29 16 10 C 0.13 -0.84 5.35 86.38 0.46 -0.38 16 11 N -0.71 5.35 5.56 -463.06 -2.57 2.78 16 12 C 0.52 -0.79 7.83 87.66 0.69 -0.11 16 13 O -0.59 -4.68 15.98 -3.04 -0.05 -4.73 16 14 C -0.13 0.74 6.07 29.85 0.18 0.92 16 15 C 0.07 0.06 4.03 71.98 0.29 0.35 16 16 O -0.32 -1.34 10.14 -92.39 -0.94 -2.27 16 17 C 0.13 0.83 6.69 22.51 0.15 0.98 16 18 C -0.21 -1.23 9.04 22.37 0.20 -1.03 16 19 C -0.06 -0.34 9.68 22.26 0.22 -0.13 16 20 C -0.13 -0.82 5.38 -19.85 -0.11 -0.93 16 21 C -0.08 -0.04 2.79 71.23 0.20 0.16 16 22 O -0.57 -0.43 12.81 -148.98 -1.91 -2.33 16 23 Si 0.77 -1.10 29.85 68.60 2.05 0.94 16 24 C -0.10 -0.69 8.66 22.25 0.19 -0.50 16 25 C -0.15 -0.98 9.99 22.37 0.22 -0.76 16 26 C -0.11 0.71 7.26 31.12 0.23 0.94 16 27 H 0.15 -1.97 8.14 -2.39 -0.02 -1.99 16 28 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 29 H 0.15 -2.17 8.14 -2.39 -0.02 -2.19 16 30 H 0.11 -1.08 7.36 -2.39 -0.02 -1.09 16 31 H 0.11 -1.53 8.10 -2.38 -0.02 -1.55 16 32 H 0.07 -0.39 7.39 -2.39 -0.02 -0.40 16 33 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.42 -5.78 8.47 -92.71 -0.79 -6.56 16 35 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 36 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 37 H 0.07 0.15 7.61 -2.39 -0.02 0.13 16 38 H 0.07 0.15 7.63 -2.39 -0.02 0.13 16 39 H 0.14 0.49 6.30 -2.91 -0.02 0.47 16 40 H 0.14 0.39 8.06 -2.91 -0.02 0.37 16 41 H 0.09 -0.33 7.96 -2.39 -0.02 -0.34 16 42 H 0.40 -4.03 8.74 -74.06 -0.65 -4.68 16 43 H -0.30 -1.73 7.05 99.48 0.70 -1.03 16 44 H -0.29 -1.12 7.11 99.48 0.71 -0.42 16 45 H 0.13 0.68 4.86 -2.91 -0.01 0.67 16 46 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 47 H 0.09 -0.61 8.10 -2.38 -0.02 -0.63 16 48 H 0.10 -0.51 8.10 -2.39 -0.02 -0.53 16 Total: 0.00 -36.89 408.87 -4.20 -41.08 By element: Atomic # 1 Polarization: -26.24 SS G_CDS: -0.41 Total: -26.65 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 4.43 Total: 14.27 kcal Atomic # 7 Polarization: 5.35 SS G_CDS: -2.57 Total: 2.78 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -7.39 Total: -26.71 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: 2.05 Total: 0.94 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -0.30 Total: -5.71 kcal Total: -36.89 -4.20 -41.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.779 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds