Wall clock time and date at job start Tue Mar 9 2021 13:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57730 * 2 1 4 4 O 1.42103 * 108.57931 * 228.97093 * 2 1 3 5 5 C 1.81407 * 101.91887 * 114.48463 * 2 1 3 6 6 H 1.09001 * 112.90735 * 311.24534 * 5 2 1 7 7 C 1.53782 * 113.61461 * 82.50377 * 5 2 1 8 8 C 1.53783 * 87.07945 * 139.97836 * 7 5 2 9 9 H 1.09000 * 113.68934 * 220.00524 * 8 7 5 10 10 C 1.52999 * 113.61307 * 89.11844 * 8 7 5 11 11 N 1.46492 * 109.47142 * 87.49994 * 10 8 7 12 12 C 1.34777 * 120.00003 * 179.97438 * 11 10 8 13 13 O 1.21640 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.47190 * 120.00433 * 179.97438 * 12 11 10 15 15 C 1.36010 * 123.45579 * 0.02562 * 14 12 11 16 16 S 1.70454 * 110.81487 * 179.69575 * 15 14 12 17 17 C 1.75506 * 92.44355 * 0.26810 * 16 15 14 18 18 C 1.50695 * 124.70909 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47631 * 244.97650 * 18 17 16 20 20 Si 1.86299 * 109.47353 * 4.97891 * 18 17 16 21 21 C 1.32768 * 110.57618 * 0.02562 * 17 16 15 22 22 C 1.53785 * 87.08339 * 334.56451 * 8 7 5 23 23 H 1.09003 * 109.46838 * 305.51568 * 1 2 3 24 24 H 1.09000 * 109.47195 * 65.51089 * 1 2 3 25 25 H 1.09000 * 109.47167 * 185.51247 * 1 2 3 26 26 H 1.09000 * 113.61046 * 25.42926 * 7 5 2 27 27 H 1.08996 * 113.61351 * 254.52643 * 7 5 2 28 28 H 1.08999 * 109.47235 * 327.49742 * 10 8 7 29 29 H 1.09001 * 109.46692 * 207.50182 * 10 8 7 30 30 H 0.97000 * 120.00489 * 0.02562 * 11 10 8 31 31 H 1.08002 * 124.59604 * 359.96898 * 15 14 12 32 32 H 1.09000 * 109.47031 * 124.97803 * 18 17 16 33 33 H 0.96705 * 113.99856 * 59.99506 * 19 18 17 34 34 H 1.48503 * 110.00043 * 179.97438 * 20 18 17 35 35 H 1.48496 * 109.99915 * 301.31549 * 20 18 17 36 36 H 1.07999 * 123.45731 * 180.02562 * 21 17 16 37 37 H 1.08995 * 113.60996 * 139.97750 * 22 8 7 38 38 H 1.08997 * 113.61493 * 270.80030 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6286 -0.2773 2.4304 7 6 2.1360 -2.2725 1.6195 8 6 3.3795 -2.2343 2.5234 9 1 4.1165 -3.0019 2.2872 10 6 3.0503 -2.1663 4.0160 11 7 2.8835 -3.5234 4.5417 12 6 2.5878 -3.7104 5.8433 13 8 2.4590 -2.7522 6.5814 14 6 2.4197 -5.0739 6.3714 15 6 2.5471 -6.1938 5.6102 16 16 2.2953 -7.5951 6.5474 17 6 2.0020 -6.6598 8.0032 18 6 1.6849 -7.2500 9.3530 19 8 0.3605 -6.8755 9.7375 20 14 1.8035 -9.1070 9.2623 21 6 2.0984 -5.3600 7.7501 22 6 3.6946 -0.8648 1.8989 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 2.3203 -2.7183 0.6420 27 1 1.2514 -2.6778 2.1106 28 1 2.1268 -1.6051 4.1592 29 1 3.8633 -1.6690 4.5451 30 1 2.9865 -4.2876 3.9532 31 1 2.7809 -6.1953 4.5558 32 1 2.3963 -6.8760 10.0893 33 1 -0.3262 -7.1757 9.1263 34 1 1.4935 -9.7011 10.5875 35 1 0.8610 -9.6267 8.2392 36 1 1.9567 -4.5953 8.4994 37 1 4.0681 -0.1336 2.6158 38 1 4.3062 -0.9257 0.9988 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17836384_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:27 Heat of formation + Delta-G solvation = -71.284335 kcal Electronic energy + Delta-G solvation = -23350.818983 eV Core-core repulsion = 19608.249399 eV Total energy + Delta-G solvation = -3742.569583 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.063 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.29058 -40.24517 -38.86351 -38.00811 -37.21759 -37.05450 -35.58361 -32.08316 -30.73959 -29.44970 -27.14873 -27.03438 -26.15185 -24.63862 -22.10871 -21.07226 -20.22630 -19.83382 -19.04667 -18.58664 -18.09637 -17.76320 -17.28150 -17.02211 -16.75390 -16.52053 -16.27946 -16.13247 -15.65336 -15.20676 -14.97642 -14.53061 -14.39431 -14.28462 -14.20730 -14.05490 -13.91030 -13.70914 -13.65031 -13.37989 -13.18745 -13.04414 -12.86497 -12.74291 -12.45111 -12.10686 -11.93079 -11.90195 -11.84221 -11.22067 -10.97277 -10.78745 -10.27036 -10.08643 -9.58651 -5.16305 -1.08612 -0.44340 0.26643 0.61413 0.83627 1.12146 1.45138 1.61985 1.81698 1.96683 2.29241 2.43625 2.68196 3.01576 3.17432 3.19490 3.26100 3.32447 3.47398 3.72895 3.76094 3.80599 3.88226 3.96995 4.12690 4.20556 4.29096 4.31919 4.40414 4.53069 4.55654 4.59013 4.61885 4.64568 4.70775 4.94489 4.97710 5.13877 5.26944 6.24058 6.33371 7.11598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.609 4.609 6 H 0.154 0.846 7 C -0.112 4.112 8 C -0.115 4.115 9 H 0.097 0.903 10 C 0.136 3.864 11 N -0.726 5.726 12 C 0.578 3.422 13 O -0.531 6.531 14 C -0.156 4.156 15 C -0.207 4.207 16 S 0.199 5.801 17 C -0.241 4.241 18 C -0.033 4.033 19 O -0.522 6.522 20 Si 0.650 3.350 21 C -0.053 4.053 22 C -0.096 4.096 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.400 0.600 31 H 0.171 0.829 32 H 0.128 0.872 33 H 0.377 0.623 34 H -0.234 1.234 35 H -0.238 1.238 36 H 0.157 0.843 37 H 0.094 0.906 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -5.760 -1.286 5.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.606 3.394 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.718 4.718 6 H 0.172 0.828 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.115 0.885 10 C 0.013 3.987 11 N -0.379 5.379 12 C 0.363 3.637 13 O -0.408 6.408 14 C -0.174 4.174 15 C -0.345 4.345 16 S 0.466 5.534 17 C -0.358 4.358 18 C -0.146 4.146 19 O -0.329 6.329 20 Si 0.548 3.452 21 C -0.082 4.082 22 C -0.135 4.135 23 H 0.147 0.853 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.235 0.765 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.225 0.775 34 H -0.157 1.157 35 H -0.162 1.162 36 H 0.174 0.826 37 H 0.113 0.887 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.337 -6.782 -1.150 6.887 hybrid contribution -1.686 1.556 0.214 2.304 sum -1.349 -5.227 -0.935 5.478 Atomic orbital electron populations 1.30239 1.26679 1.11611 1.11920 1.07802 0.78458 0.75641 0.77526 1.93616 1.79072 1.34301 1.86467 1.93608 1.79208 1.67165 1.53329 1.31783 1.07732 1.08816 1.23485 0.82826 1.22851 0.99850 0.89999 1.02352 1.22466 0.98471 0.98903 0.93621 0.88493 1.21185 1.02561 0.83443 0.91547 1.45787 1.72903 1.09272 1.09907 1.17608 0.76446 0.87971 0.81637 1.90839 1.50204 1.42252 1.57505 1.20232 1.09760 0.92975 0.94416 1.25804 1.05975 0.97793 1.04928 1.83189 1.65052 1.07128 0.98061 1.24750 1.13256 0.97431 1.00342 1.24413 0.86870 1.10710 0.92560 1.86653 1.14915 1.78961 1.52344 0.95249 0.91750 0.74124 0.84057 1.21058 0.96830 0.95656 0.94677 1.22581 0.90457 0.97776 1.02667 0.85307 0.85194 0.85294 0.87165 0.89344 0.90763 0.90399 0.76480 0.81125 0.85415 0.77465 1.15679 1.16222 0.82597 0.88716 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.68 10.62 101.05 1.07 3.76 16 2 S 2.42 -3.67 5.34 -107.50 -0.57 -4.24 16 3 O -0.94 -2.76 18.10 -57.83 -1.05 -3.81 16 4 O -0.94 -1.75 17.19 -57.83 -0.99 -2.75 16 5 C -0.61 2.32 3.82 -25.91 -0.10 2.22 16 6 H 0.15 -0.87 7.72 -51.93 -0.40 -1.27 16 7 C -0.11 0.50 7.16 -25.92 -0.19 0.31 16 8 C -0.11 0.45 3.94 -89.80 -0.35 0.10 16 9 H 0.10 -0.47 8.14 -51.93 -0.42 -0.89 16 10 C 0.14 -0.29 5.35 -4.05 -0.02 -0.31 16 11 N -0.73 1.33 5.52 -61.46 -0.34 0.99 16 12 C 0.58 0.96 7.79 -12.62 -0.10 0.86 16 13 O -0.53 -3.09 16.80 5.24 0.09 -3.00 16 14 C -0.16 -0.04 5.98 -104.63 -0.63 -0.67 16 15 C -0.21 0.50 10.38 29.93 0.31 0.81 16 16 S 0.20 -0.49 20.20 -107.50 -2.17 -2.66 16 17 C -0.24 0.18 5.65 -36.18 -0.20 -0.02 16 18 C -0.03 0.04 2.94 36.00 0.11 0.14 16 19 O -0.52 -0.27 12.88 -35.23 -0.45 -0.72 16 20 Si 0.65 -1.28 30.92 -169.99 -5.26 -6.54 16 21 C -0.05 -0.05 9.95 -39.02 -0.39 -0.44 16 22 C -0.10 0.30 7.26 -25.91 -0.19 0.11 16 23 H 0.13 -0.71 8.14 -51.92 -0.42 -1.13 16 24 H 0.13 -0.51 8.14 -51.92 -0.42 -0.94 16 25 H 0.13 -0.75 8.14 -51.92 -0.42 -1.17 16 26 H 0.11 -0.48 7.36 -51.93 -0.38 -0.86 16 27 H 0.09 -0.47 8.10 -51.93 -0.42 -0.89 16 28 H 0.07 -0.12 7.39 -51.93 -0.38 -0.50 16 29 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 30 H 0.40 -1.86 6.97 -40.82 -0.28 -2.14 16 31 H 0.17 -0.93 7.01 -52.49 -0.37 -1.30 16 32 H 0.13 -0.22 7.96 -51.93 -0.41 -0.63 16 33 H 0.38 -0.94 8.70 45.56 0.40 -0.54 16 34 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 35 H -0.24 0.14 7.11 56.52 0.40 0.54 16 36 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.09 -0.33 8.10 -51.93 -0.42 -0.75 16 38 H 0.10 -0.32 8.10 -51.93 -0.42 -0.74 16 LS Contribution 348.18 15.07 5.25 5.25 Total: 0.00 -13.27 348.18 -11.01 -24.27 By element: Atomic # 1 Polarization: -8.84 SS G_CDS: -4.83 Total: -13.67 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -0.68 Total: 6.87 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -0.34 Total: 0.99 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -2.41 Total: -10.28 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.26 Total: -6.54 kcal Atomic # 16 Polarization: -4.16 SS G_CDS: -2.75 Total: -6.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -13.27 -11.01 -24.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.010 kcal (2) G-P(sol) polarization free energy of solvation -13.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds