Wall clock time and date at job start Tue Mar 9 2021 13:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42098 * 108.57730 * 2 1 4 4 O 1.42103 * 108.57931 * 228.97093 * 2 1 3 5 5 C 1.81407 * 101.91887 * 114.48463 * 2 1 3 6 6 H 1.09001 * 112.90735 * 311.24534 * 5 2 1 7 7 C 1.53782 * 113.61461 * 82.50377 * 5 2 1 8 8 C 1.53783 * 87.07945 * 139.97836 * 7 5 2 9 9 H 1.09000 * 113.68934 * 220.00524 * 8 7 5 10 10 C 1.52999 * 113.61307 * 89.11844 * 8 7 5 11 11 N 1.46492 * 109.47142 * 87.49994 * 10 8 7 12 12 C 1.34777 * 120.00003 * 179.97438 * 11 10 8 13 13 O 1.21640 * 120.00062 * 0.02562 * 12 11 10 14 14 C 1.47190 * 120.00433 * 179.97438 * 12 11 10 15 15 C 1.36010 * 123.45579 * 0.02562 * 14 12 11 16 16 S 1.70454 * 110.81487 * 179.69575 * 15 14 12 17 17 C 1.75506 * 92.44355 * 0.26810 * 16 15 14 18 18 C 1.50695 * 124.70909 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47631 * 244.97650 * 18 17 16 20 20 Si 1.86299 * 109.47353 * 4.97891 * 18 17 16 21 21 C 1.32768 * 110.57618 * 0.02562 * 17 16 15 22 22 C 1.53785 * 87.08339 * 334.56451 * 8 7 5 23 23 H 1.09003 * 109.46838 * 305.51568 * 1 2 3 24 24 H 1.09000 * 109.47195 * 65.51089 * 1 2 3 25 25 H 1.09000 * 109.47167 * 185.51247 * 1 2 3 26 26 H 1.09000 * 113.61046 * 25.42926 * 7 5 2 27 27 H 1.08996 * 113.61351 * 254.52643 * 7 5 2 28 28 H 1.08999 * 109.47235 * 327.49742 * 10 8 7 29 29 H 1.09001 * 109.46692 * 207.50182 * 10 8 7 30 30 H 0.97000 * 120.00489 * 0.02562 * 11 10 8 31 31 H 1.08002 * 124.59604 * 359.96898 * 15 14 12 32 32 H 1.09000 * 109.47031 * 124.97803 * 18 17 16 33 33 H 0.96705 * 113.99856 * 59.99506 * 19 18 17 34 34 H 1.48503 * 110.00043 * 179.97438 * 20 18 17 35 35 H 1.48496 * 109.99915 * 301.31549 * 20 18 17 36 36 H 1.07999 * 123.45731 * 180.02562 * 21 17 16 37 37 H 1.08995 * 113.60996 * 139.97750 * 22 8 7 38 38 H 1.08997 * 113.61493 * 270.80030 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 1 1.6286 -0.2773 2.4304 7 6 2.1360 -2.2725 1.6195 8 6 3.3795 -2.2343 2.5234 9 1 4.1165 -3.0019 2.2872 10 6 3.0503 -2.1663 4.0160 11 7 2.8835 -3.5234 4.5417 12 6 2.5878 -3.7104 5.8433 13 8 2.4590 -2.7522 6.5814 14 6 2.4197 -5.0739 6.3714 15 6 2.5471 -6.1938 5.6102 16 16 2.2953 -7.5951 6.5474 17 6 2.0020 -6.6598 8.0032 18 6 1.6849 -7.2500 9.3530 19 8 0.3605 -6.8755 9.7375 20 14 1.8035 -9.1070 9.2623 21 6 2.0984 -5.3600 7.7501 22 6 3.6946 -0.8648 1.8989 23 1 -0.3633 0.5970 0.8365 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 2.3203 -2.7183 0.6420 27 1 1.2514 -2.6778 2.1106 28 1 2.1268 -1.6051 4.1592 29 1 3.8633 -1.6690 4.5451 30 1 2.9865 -4.2876 3.9532 31 1 2.7809 -6.1953 4.5558 32 1 2.3963 -6.8760 10.0893 33 1 -0.3262 -7.1757 9.1263 34 1 1.4935 -9.7011 10.5875 35 1 0.8610 -9.6267 8.2392 36 1 1.9567 -4.5953 8.4994 37 1 4.0681 -0.1336 2.6158 38 1 4.3062 -0.9257 0.9988 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:27 Heat of formation + Delta-G solvation = -78.969761 kcal Electronic energy + Delta-G solvation = -23351.152248 eV Core-core repulsion = 19608.249399 eV Total energy + Delta-G solvation = -3742.902848 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.063 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22781 -40.08284 -38.83526 -38.01464 -37.19523 -37.06098 -35.58114 -32.00196 -30.45268 -29.29780 -26.94994 -26.84488 -26.00861 -24.50372 -22.08263 -20.95078 -20.11979 -19.66997 -18.91550 -18.43069 -18.03923 -17.70264 -17.14508 -16.91751 -16.68937 -16.49316 -16.23803 -15.98306 -15.55898 -15.09746 -14.87754 -14.45784 -14.13359 -14.09554 -13.97536 -13.93128 -13.65484 -13.62193 -13.55304 -13.21797 -13.21433 -13.06733 -12.72002 -12.64284 -12.43185 -11.98307 -11.86202 -11.63310 -11.57404 -11.13139 -10.89993 -10.73638 -10.25725 -9.98167 -9.44148 -5.02800 -0.92372 -0.32566 0.40669 0.71172 0.82650 1.23219 1.55915 1.82521 1.91732 2.06802 2.26685 2.63408 2.89868 3.27329 3.31475 3.41830 3.49858 3.59099 3.62378 3.94661 3.99926 4.06678 4.14668 4.24362 4.30282 4.38564 4.50565 4.58509 4.61178 4.72086 4.74013 4.87766 4.91864 4.94266 4.96564 5.01818 5.17737 5.22206 5.37388 6.41398 6.45786 7.14088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.419 3.581 3 O -0.993 6.993 4 O -0.978 6.978 5 C -0.594 4.594 6 H 0.175 0.825 7 C -0.109 4.109 8 C -0.104 4.104 9 H 0.112 0.888 10 C 0.135 3.865 11 N -0.708 5.708 12 C 0.574 3.426 13 O -0.586 6.586 14 C -0.183 4.183 15 C -0.188 4.188 16 S 0.248 5.752 17 C -0.246 4.246 18 C -0.047 4.047 19 O -0.545 6.545 20 Si 0.728 3.272 21 C -0.076 4.076 22 C -0.112 4.112 23 H 0.148 0.852 24 H 0.130 0.870 25 H 0.153 0.847 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.416 0.584 31 H 0.207 0.793 32 H 0.128 0.872 33 H 0.388 0.612 34 H -0.279 1.279 35 H -0.248 1.248 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 -7.811 -2.284 8.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.796 4.796 2 S 2.608 3.392 3 O -0.991 6.991 4 O -0.975 6.975 5 C -0.705 4.705 6 H 0.193 0.807 7 C -0.147 4.147 8 C -0.124 4.124 9 H 0.130 0.870 10 C 0.011 3.989 11 N -0.360 5.360 12 C 0.361 3.639 13 O -0.467 6.467 14 C -0.200 4.200 15 C -0.326 4.326 16 S 0.515 5.485 17 C -0.363 4.363 18 C -0.158 4.158 19 O -0.353 6.353 20 Si 0.629 3.371 21 C -0.105 4.105 22 C -0.151 4.151 23 H 0.166 0.834 24 H 0.148 0.852 25 H 0.171 0.829 26 H 0.131 0.869 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.254 0.746 31 H 0.224 0.776 32 H 0.145 0.855 33 H 0.238 0.762 34 H -0.204 1.204 35 H -0.173 1.173 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.125 -8.825 -2.230 9.103 hybrid contribution -1.573 2.126 0.581 2.708 sum -1.698 -6.699 -1.649 7.105 Atomic orbital electron populations 1.30114 1.22896 1.13699 1.12871 1.07536 0.79665 0.74074 0.77915 1.93544 1.80976 1.37037 1.87504 1.93547 1.80828 1.67463 1.55667 1.31697 1.07631 1.09459 1.21743 0.80720 1.22930 1.00257 0.89033 1.02449 1.22346 0.99178 0.98717 0.92181 0.86988 1.21194 1.01969 0.83169 0.92535 1.45650 1.71269 1.10105 1.09011 1.17891 0.75799 0.87979 0.82208 1.90805 1.53054 1.43877 1.59001 1.20083 1.12395 0.93102 0.94459 1.26196 1.03211 0.96848 1.06383 1.83045 1.63532 1.05808 0.96133 1.24806 1.12787 0.97315 1.01377 1.24718 0.86318 1.12032 0.92709 1.86617 1.15901 1.79595 1.53233 0.94395 0.90386 0.71389 0.80931 1.20997 0.98508 0.95932 0.95095 1.22721 0.90978 0.98570 1.02786 0.83401 0.85191 0.82867 0.86916 0.87517 0.91106 0.91759 0.74564 0.77629 0.85461 0.76221 1.20436 1.17284 0.85105 0.88762 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.05 10.62 113.37 1.20 7.26 16 2 S 2.42 -5.78 5.34 -56.49 -0.30 -6.08 16 3 O -0.99 -7.74 18.10 -127.37 -2.30 -10.05 16 4 O -0.98 -4.70 17.19 -127.37 -2.19 -6.89 16 5 C -0.59 4.87 3.82 31.12 0.12 4.99 16 6 H 0.18 -2.18 7.72 -2.39 -0.02 -2.20 16 7 C -0.11 1.14 7.16 31.12 0.22 1.37 16 8 C -0.10 0.94 3.94 -10.27 -0.04 0.90 16 9 H 0.11 -1.30 8.14 -2.39 -0.02 -1.32 16 10 C 0.13 -0.62 5.35 86.38 0.46 -0.16 16 11 N -0.71 3.23 5.52 -466.61 -2.58 0.65 16 12 C 0.57 2.23 7.79 86.59 0.67 2.91 16 13 O -0.59 -8.09 16.80 -4.16 -0.07 -8.16 16 14 C -0.18 -0.09 5.98 -19.87 -0.12 -0.21 16 15 C -0.19 1.32 10.38 67.30 0.70 2.01 16 16 S 0.25 -1.73 20.20 -56.49 -1.14 -2.87 16 17 C -0.25 0.35 5.65 24.51 0.14 0.49 16 18 C -0.05 0.07 2.94 71.23 0.21 0.28 16 19 O -0.54 -1.12 12.88 -148.98 -1.92 -3.03 16 20 Si 0.73 -3.19 30.92 68.60 2.12 -1.07 16 21 C -0.08 -0.25 9.95 22.67 0.23 -0.02 16 22 C -0.11 0.69 7.26 31.12 0.23 0.91 16 23 H 0.15 -1.90 8.14 -2.39 -0.02 -1.92 16 24 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 25 H 0.15 -2.15 8.14 -2.39 -0.02 -2.17 16 26 H 0.11 -1.15 7.36 -2.39 -0.02 -1.17 16 27 H 0.11 -1.46 8.10 -2.39 -0.02 -1.48 16 28 H 0.07 -0.25 7.39 -2.39 -0.02 -0.27 16 29 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.42 -4.85 6.97 -92.71 -0.65 -5.49 16 31 H 0.21 -3.07 7.01 -2.91 -0.02 -3.09 16 32 H 0.13 -0.28 7.96 -2.39 -0.02 -0.30 16 33 H 0.39 -1.69 8.70 -74.05 -0.64 -2.34 16 34 H -0.28 -0.84 7.11 99.48 0.71 -0.13 16 35 H -0.25 0.68 7.11 99.48 0.71 1.39 16 36 H 0.13 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.09 -0.58 8.10 -2.39 -0.02 -0.60 16 38 H 0.10 -0.55 8.10 -2.39 -0.02 -0.57 16 Total: 0.00 -34.20 348.18 -4.51 -38.71 By element: Atomic # 1 Polarization: -21.80 SS G_CDS: -0.15 Total: -21.95 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 4.02 Total: 20.74 kcal Atomic # 7 Polarization: 3.23 SS G_CDS: -2.58 Total: 0.65 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -6.48 Total: -28.13 kcal Atomic # 14 Polarization: -3.19 SS G_CDS: 2.12 Total: -1.07 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.44 Total: -8.95 kcal Total: -34.20 -4.51 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.260 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds