Wall clock time and date at job start Tue Mar 9 2021 13:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42103 * 108.57745 * 2 1 4 4 O 1.42098 * 108.57970 * 228.97607 * 2 1 3 5 5 C 1.81401 * 101.92103 * 114.48820 * 2 1 3 6 6 H 1.08989 * 112.85135 * 53.80455 * 5 2 1 7 7 C 1.53784 * 113.61260 * 185.00143 * 5 2 1 8 8 C 1.53781 * 87.08054 * 139.98005 * 7 5 2 9 9 H 1.08999 * 113.61454 * 219.93063 * 8 7 5 10 10 C 1.53004 * 113.61155 * 89.11559 * 8 7 5 11 11 N 1.46505 * 109.46797 * 174.99898 * 10 8 7 12 12 C 1.34772 * 120.00009 * 179.97438 * 11 10 8 13 13 O 1.21285 * 119.99913 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00186 * 179.97438 * 12 11 10 15 15 N 1.46501 * 109.47261 * 180.02562 * 14 12 11 16 16 C 1.36835 * 125.05899 * 264.97546 * 15 14 12 17 17 C 1.34235 * 109.93739 * 180.02562 * 16 15 14 18 18 C 1.50705 * 126.50377 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.46913 * 105.02681 * 18 17 16 20 20 Si 1.86296 * 109.46774 * 345.02914 * 18 17 16 21 21 C 1.46493 * 106.99829 * 0.02562 * 17 16 15 22 22 C 1.39595 * 134.03482 * 179.97438 * 21 17 16 23 23 C 1.36654 * 119.76204 * 180.02562 * 22 21 17 24 24 C 1.38793 * 120.53129 * 359.97438 * 23 22 21 25 25 C 1.37790 * 120.66437 * 359.97438 * 24 23 22 26 26 C 1.37693 * 125.06582 * 84.99837 * 15 14 12 27 27 C 1.53773 * 87.08083 * 334.56694 * 8 7 5 28 28 H 1.09008 * 109.47365 * 305.51168 * 1 2 3 29 29 H 1.09004 * 109.47543 * 65.51320 * 1 2 3 30 30 H 1.08995 * 109.47190 * 185.51286 * 1 2 3 31 31 H 1.08998 * 113.61373 * 25.43177 * 7 5 2 32 32 H 1.09005 * 113.68956 * 254.54054 * 7 5 2 33 33 H 1.08994 * 109.47337 * 55.00186 * 10 8 7 34 34 H 1.08995 * 109.47041 * 294.99956 * 10 8 7 35 35 H 0.97002 * 120.00234 * 359.97438 * 11 10 8 36 36 H 1.08998 * 109.47188 * 60.00121 * 14 12 11 37 37 H 1.09003 * 109.47100 * 300.00254 * 14 12 11 38 38 H 1.07997 * 125.03657 * 359.76382 * 16 15 14 39 39 H 1.08999 * 109.47175 * 225.02858 * 18 17 16 40 40 H 0.96700 * 114.00224 * 299.99919 * 19 18 17 41 41 H 1.48503 * 110.00062 * 179.97438 * 20 18 17 42 42 H 1.48504 * 110.00109 * 301.31800 * 20 18 17 43 43 H 1.07999 * 120.11544 * 0.02562 * 22 21 17 44 44 H 1.08006 * 119.73833 * 180.02562 * 23 22 21 45 45 H 1.07997 * 119.66704 * 179.97438 * 24 23 22 46 46 H 1.08002 * 120.10827 * 179.97438 * 25 24 23 47 47 H 1.08998 * 113.61317 * 139.98210 * 27 8 7 48 48 H 1.09004 * 113.61222 * 270.88050 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.6958 -1.6957 1.7676 7 6 3.6894 -0.7535 1.9508 8 6 3.2921 -0.3793 3.3885 9 1 3.9586 0.3493 3.8500 10 6 3.0232 -1.5898 4.2848 11 7 2.7711 -1.1364 5.6549 12 6 2.5080 -2.0350 6.6243 13 8 2.4805 -3.2189 6.3626 14 6 2.2493 -1.5687 8.0338 15 7 1.9916 -2.7277 8.8921 16 6 0.7515 -3.2143 9.2044 17 6 0.8681 -4.2814 10.0103 18 6 -0.2602 -5.1027 10.5793 19 8 -0.3416 -6.3476 9.8824 20 14 -1.8638 -4.1751 10.3831 21 6 2.3001 -4.4956 10.2329 22 6 3.0399 -5.4265 10.9641 23 6 4.4045 -5.3549 10.9698 24 6 5.0615 -4.3639 10.2538 25 6 4.3509 -3.4356 9.5244 26 6 2.9613 -3.4893 9.5050 27 6 2.0177 0.2403 2.7913 28 1 -0.3634 0.5970 0.8366 29 1 -0.3634 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 4.2603 0.0217 1.4397 32 1 4.1453 -1.7401 1.8665 33 1 3.8907 -2.2496 4.2743 34 1 2.1517 -2.1296 3.9145 35 1 2.7935 -0.1896 5.8644 36 1 1.3822 -0.9083 8.0447 37 1 3.1213 -1.0296 8.4041 38 1 -0.1830 -2.7986 8.8576 39 1 -0.0757 -5.2899 11.6372 40 1 -0.5048 -6.2572 8.9335 41 1 -2.9845 -4.9746 10.9398 42 1 -1.7806 -2.8646 11.0767 43 1 2.5354 -6.2006 11.5234 44 1 4.9765 -6.0756 11.5354 45 1 6.1405 -4.3200 10.2684 46 1 4.8714 -2.6680 8.9708 47 1 1.1227 0.0555 3.3853 48 1 2.1316 1.2872 2.5100 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17836384_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:14:39 Heat of formation + Delta-G solvation = -40.027257 kcal Electronic energy + Delta-G solvation = -32039.641320 eV Core-core repulsion = 27576.321469 eV Total energy + Delta-G solvation = -4463.319851 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.133 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.51508 -40.94579 -39.86286 -38.09882 -37.99362 -37.60287 -37.04258 -35.49680 -34.05207 -31.58765 -30.45321 -30.23719 -29.84944 -28.26293 -26.80824 -25.88968 -24.89814 -23.70352 -22.66728 -21.68052 -20.72325 -20.37950 -19.66375 -18.58285 -18.38020 -18.24388 -17.72306 -17.26994 -17.12008 -16.90353 -16.62059 -16.44393 -16.40672 -16.05517 -15.78580 -15.37910 -15.25709 -14.97309 -14.78950 -14.68335 -14.35657 -14.10977 -14.04260 -13.97593 -13.90482 -13.64159 -13.59170 -13.26819 -13.21259 -13.09790 -13.04672 -12.72446 -12.69694 -12.56573 -12.23081 -12.10914 -11.95414 -11.80766 -11.61053 -11.55466 -11.18202 -10.88699 -10.54439 -10.29243 -10.14088 -9.15689 -8.61974 -4.99102 -0.90250 0.14153 0.62859 1.38055 1.43011 1.51870 1.70354 1.72506 1.85148 2.02077 2.23663 2.65535 2.93281 2.94807 3.29834 3.42993 3.48888 3.60411 3.63477 3.70511 3.71913 3.81548 3.90326 4.06289 4.09864 4.17055 4.19550 4.21905 4.27699 4.30677 4.41800 4.48314 4.55931 4.60781 4.64127 4.71874 4.75075 4.78825 4.88085 4.91311 4.95455 4.97253 4.99955 5.13117 5.25096 5.41135 5.49846 5.65357 5.72842 5.75390 6.20904 6.25011 6.52462 6.83516 7.19002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.415 3.585 3 O -0.980 6.980 4 O -0.997 6.997 5 C -0.592 4.592 6 H 0.175 0.825 7 C -0.117 4.117 8 C -0.103 4.103 9 H 0.111 0.889 10 C 0.137 3.863 11 N -0.709 5.709 12 C 0.492 3.508 13 O -0.571 6.571 14 C 0.087 3.913 15 N -0.466 5.466 16 C 0.082 3.918 17 C -0.227 4.227 18 C -0.049 4.049 19 O -0.565 6.565 20 Si 0.798 3.202 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.155 4.155 24 C -0.110 4.110 25 C -0.133 4.133 26 C 0.090 3.910 27 C -0.105 4.105 28 H 0.156 0.844 29 H 0.128 0.872 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.211 0.789 39 H 0.090 0.910 40 H 0.390 0.610 41 H -0.303 1.303 42 H -0.274 1.274 43 H 0.115 0.885 44 H 0.134 0.866 45 H 0.145 0.855 46 H 0.134 0.866 47 H 0.114 0.886 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 8.157 0.155 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.604 3.396 3 O -0.977 6.977 4 O -0.994 6.994 5 C -0.703 4.703 6 H 0.193 0.807 7 C -0.156 4.156 8 C -0.123 4.123 9 H 0.129 0.871 10 C 0.013 3.987 11 N -0.363 5.363 12 C 0.277 3.723 13 O -0.449 6.449 14 C -0.038 4.038 15 N -0.149 5.149 16 C -0.043 4.043 17 C -0.234 4.234 18 C -0.157 4.157 19 O -0.372 6.372 20 Si 0.702 3.298 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.174 4.174 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.015 4.015 27 C -0.144 4.144 28 H 0.174 0.826 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.260 0.740 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.228 0.772 39 H 0.107 0.893 40 H 0.240 0.760 41 H -0.231 1.231 42 H -0.200 1.200 43 H 0.133 0.867 44 H 0.152 0.848 45 H 0.162 0.838 46 H 0.152 0.848 47 H 0.132 0.868 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.660 8.036 0.036 8.831 hybrid contribution 0.388 -0.679 0.770 1.097 sum -3.272 7.358 0.806 8.092 Atomic orbital electron populations 1.30090 1.22510 1.13639 1.13106 1.07645 0.79862 0.74449 0.77655 1.93548 1.80922 1.36041 1.87195 1.93542 1.81086 1.67838 1.56971 1.31669 1.07361 1.13401 1.17892 0.80707 1.22745 0.91342 1.04434 0.97038 1.22330 0.98750 0.97223 0.93950 0.87129 1.21107 1.01377 0.95677 0.80505 1.45761 1.71434 1.10995 1.08125 1.21368 0.76471 0.86202 0.88247 1.90820 1.51907 1.18781 1.83435 1.22010 1.08978 0.86991 0.85794 1.43458 1.04277 1.26385 1.40740 1.22093 0.89061 0.95357 0.97814 1.20801 0.92869 1.01607 1.08149 1.24728 1.05154 0.89051 0.96810 1.86445 1.95320 1.29167 1.26304 0.94000 0.71535 0.75507 0.88730 1.19391 0.93766 0.97511 1.01591 1.20438 0.94210 0.97778 0.98648 1.20903 0.94069 1.00381 1.02013 1.21123 1.00680 0.94444 0.96648 1.20252 0.89866 1.02086 1.03110 1.18376 0.91109 0.94076 0.97930 1.22926 1.00220 0.97943 0.93269 0.82587 0.85326 0.83277 0.88569 0.89146 0.92571 0.91040 0.74020 0.81441 0.84211 0.77232 0.89251 0.76025 1.23104 1.19979 0.86738 0.84802 0.83774 0.84805 0.86799 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.27 10.62 113.37 1.20 8.47 16 2 S 2.41 -9.02 5.30 -56.49 -0.30 -9.32 16 3 O -0.98 -3.66 17.34 -127.37 -2.21 -5.87 16 4 O -1.00 -6.98 18.10 -127.37 -2.30 -9.28 16 5 C -0.59 6.10 3.81 31.12 0.12 6.22 16 6 H 0.18 -2.55 7.72 -2.39 -0.02 -2.57 16 7 C -0.12 0.90 7.26 31.12 0.23 1.13 16 8 C -0.10 1.23 3.94 -10.27 -0.04 1.19 16 9 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 10 C 0.14 -1.20 5.35 86.38 0.46 -0.74 16 11 N -0.71 8.19 5.56 -463.06 -2.57 5.62 16 12 C 0.49 -2.44 7.90 87.66 0.69 -1.74 16 13 O -0.57 -4.03 16.42 -3.05 -0.05 -4.08 16 14 C 0.09 -0.89 6.48 85.63 0.55 -0.33 16 15 N -0.47 0.24 2.27 -520.00 -1.18 -0.94 16 16 C 0.08 -0.12 9.89 83.00 0.82 0.71 16 17 C -0.23 -1.05 5.58 -18.62 -0.10 -1.15 16 18 C -0.05 -0.17 3.06 71.24 0.22 0.05 16 19 O -0.56 -3.19 12.88 -148.98 -1.92 -5.11 16 20 Si 0.80 -2.07 30.75 68.60 2.11 0.04 16 21 C -0.12 -1.14 6.35 -20.20 -0.13 -1.26 16 22 C -0.09 -0.92 10.05 22.23 0.22 -0.70 16 23 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 24 C -0.11 -0.54 10.01 22.30 0.22 -0.32 16 25 C -0.13 -0.62 10.00 22.37 0.22 -0.39 16 26 C 0.09 0.57 6.80 39.03 0.27 0.83 16 27 C -0.11 1.46 7.16 31.12 0.22 1.68 16 28 H 0.16 -2.58 8.14 -2.39 -0.02 -2.60 16 29 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 30 H 0.15 -2.23 8.14 -2.39 -0.02 -2.25 16 31 H 0.10 -0.62 8.10 -2.39 -0.02 -0.64 16 32 H 0.09 -0.65 8.10 -2.38 -0.02 -0.66 16 33 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 34 H 0.07 -0.55 7.39 -2.39 -0.02 -0.57 16 35 H 0.42 -7.93 8.47 -92.71 -0.79 -8.72 16 36 H 0.17 -3.21 8.12 -2.39 -0.02 -3.23 16 37 H 0.14 -2.02 8.14 -2.39 -0.02 -2.03 16 38 H 0.21 -2.28 6.34 -2.91 -0.02 -2.30 16 39 H 0.09 0.56 7.96 -2.39 -0.02 0.54 16 40 H 0.39 -0.80 8.70 -74.06 -0.64 -1.45 16 41 H -0.30 -1.64 7.11 99.48 0.71 -0.93 16 42 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 43 H 0.11 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.13 0.43 8.06 -2.91 -0.02 0.40 16 45 H 0.14 -0.02 8.06 -2.91 -0.02 -0.05 16 46 H 0.13 -0.07 8.06 -2.91 -0.02 -0.09 16 47 H 0.11 -2.08 8.10 -2.39 -0.02 -2.09 16 48 H 0.11 -1.46 7.48 -2.38 -0.02 -1.48 16 Total: 0.00 -44.98 414.63 -3.42 -48.40 By element: Atomic # 1 Polarization: -31.82 SS G_CDS: -0.40 Total: -32.22 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.40 Total: 12.76 kcal Atomic # 7 Polarization: 8.44 SS G_CDS: -3.75 Total: 4.68 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -6.48 Total: -24.35 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.11 Total: 0.04 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -0.30 Total: -9.32 kcal Total: -44.98 -3.42 -48.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17836384_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -44.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds