Wall clock time and date at job start Tue Mar 9 2021 13:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46646 * 2 1 4 4 C 1.50700 * 109.47427 * 120.00014 * 2 1 3 5 5 C 1.38240 * 119.99757 * 65.00557 * 4 2 1 6 6 C 1.38232 * 119.99693 * 180.02562 * 5 4 2 7 7 C 1.38238 * 120.00355 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00295 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.46944 * 89.99702 * 8 7 6 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 H 1.08993 * 112.85228 * 43.80845 * 14 13 12 16 16 C 1.53789 * 113.61178 * 174.99973 * 14 13 12 17 17 C 1.53778 * 87.08158 * 139.98580 * 16 14 13 18 18 H 1.08993 * 113.61714 * 89.19836 * 17 16 14 19 19 O 1.42900 * 113.61290 * 220.02247 * 17 16 14 20 20 C 1.53781 * 113.61633 * 272.49443 * 14 13 12 21 21 C 1.38236 * 119.99529 * 0.25429 * 7 6 5 22 22 C 1.38231 * 119.99787 * 245.02433 * 4 2 1 23 23 H 0.96695 * 113.99989 * 60.00173 * 1 2 3 24 24 H 1.09001 * 109.47135 * 240.00375 * 2 1 3 25 25 H 1.48496 * 110.00259 * 298.68469 * 3 2 1 26 26 H 1.48501 * 110.00101 * 60.00230 * 3 2 1 27 27 H 1.08000 * 119.99761 * 359.97438 * 5 4 2 28 28 H 1.07996 * 119.99778 * 179.97438 * 6 5 4 29 29 H 1.09003 * 109.46601 * 330.00143 * 8 7 6 30 30 H 1.08993 * 109.46922 * 210.00442 * 8 7 6 31 31 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 32 32 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 33 33 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 34 34 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 35 35 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 36 36 H 1.09008 * 113.61475 * 254.53362 * 16 14 13 37 37 H 1.08997 * 113.61324 * 25.34711 * 16 14 13 38 38 H 0.96702 * 114.00032 * 179.97438 * 19 17 16 39 39 H 1.08991 * 113.61326 * 334.57278 * 20 14 13 40 40 H 1.08998 * 113.61046 * 105.47513 * 20 14 13 41 41 H 1.07996 * 119.99870 * 179.72547 * 21 7 6 42 42 H 1.07993 * 120.00723 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6849 -2.0602 1.3982 6 6 2.1453 -2.7117 2.5271 7 6 2.8527 -2.0136 3.4880 8 6 3.3541 -2.7238 4.7190 9 6 4.7354 -3.2668 4.4580 10 8 5.2611 -3.0938 3.3788 11 7 5.3869 -3.9439 5.4242 12 6 6.7272 -4.4770 5.1685 13 6 7.2343 -5.2023 6.4166 14 6 8.6339 -5.7596 6.1493 15 1 9.2809 -5.0497 5.6342 16 6 9.2863 -6.4043 7.3838 17 6 9.8152 -7.4947 6.4372 18 1 10.7863 -7.2609 6.0010 19 8 9.7582 -8.8107 6.9914 20 6 8.6284 -7.1617 5.5176 21 6 3.0950 -0.6628 3.3224 22 6 2.6384 -0.0121 2.1914 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5138 -0.8900 25 1 1.5877 2.4586 -1.2241 26 1 1.5614 2.4679 1.2085 27 1 1.1320 -2.6055 0.6477 28 1 1.9524 -3.7662 2.6584 29 1 2.6809 -3.5454 4.9639 30 1 3.3906 -2.0231 5.5530 31 1 4.9666 -4.0820 6.2875 32 1 6.6870 -5.1762 4.3332 33 1 7.4036 -3.6579 4.9244 34 1 7.2746 -4.5032 7.2518 35 1 6.5579 -6.0216 6.6608 36 1 10.0722 -5.7951 7.8305 37 1 8.5672 -6.7711 8.1162 38 1 10.0891 -9.5009 6.4005 39 1 7.7295 -7.7368 5.7392 40 1 8.8831 -7.1640 4.4578 41 1 3.6438 -0.1164 4.0751 42 1 2.8304 1.0425 2.0607 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:08 Heat of formation + Delta-G solvation = -76.486736 kcal Electronic energy + Delta-G solvation = -22199.300143 eV Core-core repulsion = 18725.108806 eV Total energy + Delta-G solvation = -3474.191336 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 292.151 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15529 -40.43350 -39.95170 -37.80237 -36.76740 -35.54987 -34.18296 -31.95623 -31.74291 -29.61563 -26.70675 -26.21178 -24.91395 -23.82458 -22.59306 -22.11817 -21.23839 -20.40954 -18.58845 -18.47319 -17.96260 -17.64593 -17.05686 -16.88744 -16.49778 -16.33352 -15.95503 -15.51479 -15.35523 -15.11692 -14.80254 -14.60842 -14.38231 -14.13971 -13.98027 -13.56306 -13.38933 -13.28551 -13.03909 -12.94250 -12.63217 -12.43505 -12.25008 -11.97876 -11.91904 -11.73468 -11.64754 -11.16644 -10.97037 -10.65086 -10.51499 -10.08008 -9.87936 -9.61274 -4.94715 0.23229 0.45158 1.27046 1.55777 1.66666 1.89270 2.19853 2.74885 3.32962 3.39547 3.53533 3.64720 3.65086 3.81728 3.84483 3.90404 4.00469 4.02434 4.05488 4.17053 4.28388 4.33159 4.42182 4.45357 4.48802 4.61710 4.63765 4.71676 4.72755 4.82410 4.86196 4.97139 5.01001 5.05708 5.08277 5.16414 5.28462 5.37292 5.47636 5.51104 5.53712 5.58183 6.00925 6.55954 6.58064 6.87608 7.29295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.088 4.088 3 Si 0.761 3.239 4 C -0.091 4.091 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.072 4.072 8 C -0.098 4.098 9 C 0.511 3.489 10 O -0.579 6.579 11 N -0.721 5.721 12 C 0.123 3.877 13 C -0.108 4.108 14 C -0.101 4.101 15 H 0.101 0.899 16 C -0.127 4.127 17 C 0.066 3.934 18 H 0.092 0.908 19 O -0.584 6.584 20 C -0.165 4.165 21 C -0.111 4.111 22 C -0.127 4.127 23 H 0.394 0.606 24 H 0.089 0.911 25 H -0.283 1.283 26 H -0.295 1.295 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.417 0.583 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.393 0.607 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -0.918 2.684 3.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.196 4.196 3 Si 0.666 3.334 4 C -0.091 4.091 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.137 4.137 9 C 0.299 3.701 10 O -0.459 6.459 11 N -0.374 5.374 12 C -0.001 4.001 13 C -0.146 4.146 14 C -0.120 4.120 15 H 0.119 0.881 16 C -0.165 4.165 17 C 0.008 3.992 18 H 0.110 0.890 19 O -0.392 6.392 20 C -0.203 4.203 21 C -0.129 4.129 22 C -0.144 4.144 23 H 0.244 0.756 24 H 0.107 0.893 25 H -0.210 1.210 26 H -0.222 1.222 27 H 0.143 0.857 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.243 0.757 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.161 0.839 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.182 0.029 2.972 3.687 hybrid contribution -1.092 -0.608 -0.891 1.534 sum 1.091 -0.579 2.081 2.420 Atomic orbital electron populations 1.86542 1.18495 1.80731 1.50965 1.25027 0.84053 1.12044 0.98477 0.94010 0.90637 0.72193 0.76601 1.19490 0.99238 0.94489 0.95901 1.21121 0.99177 0.94225 0.98165 1.21252 0.98058 1.00356 0.93811 1.19600 0.97492 0.93945 0.96225 1.20748 0.92856 1.02742 0.97344 1.20985 0.88059 0.77475 0.83622 1.90739 1.69648 1.59193 1.26288 1.45952 1.18183 1.56194 1.17107 1.21289 0.83086 0.97379 0.98371 1.21659 0.95707 1.00433 0.96786 1.22222 0.96694 0.95875 0.97246 0.88084 1.23135 1.00618 0.95773 0.96968 1.23513 0.97642 0.82685 0.95391 0.89020 1.86484 1.87843 1.17604 1.47266 1.23746 0.99737 0.96995 0.99782 1.21218 0.99278 0.94408 0.97964 1.21154 0.99089 1.00043 0.94143 0.75584 0.89298 1.20988 1.22214 0.85663 0.84801 0.85375 0.84988 0.74568 0.92959 0.92457 0.89669 0.90536 0.90246 0.89789 0.75742 0.89852 0.90992 0.83929 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.81 12.81 -148.98 -1.91 -4.72 16 2 C -0.09 -0.27 2.79 71.24 0.20 -0.07 16 3 Si 0.76 0.67 29.85 68.60 2.05 2.72 16 4 C -0.09 -0.60 5.38 -19.87 -0.11 -0.71 16 5 C -0.11 -0.75 9.69 22.27 0.22 -0.53 16 6 C -0.12 -0.58 9.70 22.27 0.22 -0.37 16 7 C -0.07 -0.24 4.37 -19.87 -0.09 -0.33 16 8 C -0.10 0.35 5.83 29.10 0.17 0.52 16 9 C 0.51 1.05 7.82 87.66 0.69 1.74 16 10 O -0.58 -7.15 16.03 -3.04 -0.05 -7.20 16 11 N -0.72 2.58 5.56 -463.05 -2.57 0.01 16 12 C 0.12 -0.24 5.66 86.38 0.49 0.25 16 13 C -0.11 0.65 5.17 30.59 0.16 0.81 16 14 C -0.10 0.45 3.65 -10.27 -0.04 0.41 16 15 H 0.10 -0.51 8.13 -2.39 -0.02 -0.53 16 16 C -0.13 0.31 7.47 31.12 0.23 0.54 16 17 C 0.07 -0.11 5.21 31.12 0.16 0.06 16 18 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 19 O -0.58 -0.87 13.67 -148.98 -2.04 -2.91 16 20 C -0.16 0.45 7.46 31.12 0.23 0.68 16 21 C -0.11 -0.42 9.70 22.27 0.22 -0.20 16 22 C -0.13 -0.65 8.67 22.27 0.19 -0.45 16 23 H 0.39 -1.31 8.74 -74.06 -0.65 -1.96 16 24 H 0.09 -0.01 7.96 -2.39 -0.02 -0.03 16 25 H -0.28 -1.19 7.11 99.48 0.71 -0.49 16 26 H -0.29 -2.16 7.05 99.48 0.70 -1.46 16 27 H 0.13 0.65 8.06 -2.91 -0.02 0.63 16 28 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 29 H 0.13 -1.07 8.09 -2.39 -0.02 -1.09 16 30 H 0.13 -1.19 8.08 -2.39 -0.02 -1.21 16 31 H 0.42 -4.25 8.47 -92.71 -0.79 -5.04 16 32 H 0.05 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.08 -0.48 7.84 -2.38 -0.02 -0.50 16 36 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 37 H 0.08 -0.07 8.10 -2.39 -0.02 -0.09 16 38 H 0.39 -2.46 9.12 -74.06 -0.68 -3.14 16 39 H 0.08 -0.10 7.89 -2.39 -0.02 -0.12 16 40 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.14 -0.13 8.06 -2.91 -0.02 -0.16 16 42 H 0.14 0.22 4.87 -2.91 -0.01 0.21 16 Total: 0.00 -23.46 350.99 -2.62 -26.08 By element: Atomic # 1 Polarization: -15.30 SS G_CDS: -1.04 Total: -16.33 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 2.94 Total: 2.35 kcal Atomic # 7 Polarization: 2.58 SS G_CDS: -2.57 Total: 0.01 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -3.99 Total: -14.83 kcal Atomic # 14 Polarization: 0.67 SS G_CDS: 2.05 Total: 2.72 kcal Total: -23.46 -2.62 -26.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.408 kcal (2) G-P(sol) polarization free energy of solvation -23.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds