Wall clock time and date at job start Tue Mar 9 2021 13:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34807 * 125.90170 * 2 1 4 4 C 1.40996 * 107.48679 * 180.25803 * 3 2 1 5 5 C 1.50700 * 126.26121 * 179.71880 * 4 3 2 6 6 O 1.42894 * 109.47177 * 255.04666 * 5 4 3 7 7 Si 1.86301 * 109.46815 * 15.04655 * 5 4 3 8 8 C 1.34812 * 107.48355 * 359.75882 * 4 3 2 9 9 C 1.50699 * 125.90117 * 180.02562 * 8 4 3 10 10 N 1.36651 * 125.90434 * 179.84300 * 2 1 3 11 11 C 1.39663 * 125.67979 * 0.02562 * 10 2 1 12 12 C 1.40202 * 120.15556 * 89.68965 * 11 10 2 13 13 C 1.47573 * 120.19263 * 0.02562 * 12 11 10 14 14 O 1.21588 * 119.99897 * 359.72510 * 13 12 11 15 15 N 1.34773 * 119.99890 * 179.72415 * 13 12 11 16 16 C 1.46502 * 119.99918 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47142 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46984 * 179.97438 * 17 16 15 19 19 H 1.09000 * 112.90903 * 43.74657 * 18 17 16 20 20 C 1.53784 * 113.61330 * 175.00028 * 18 17 16 21 21 C 1.53787 * 87.07923 * 139.97966 * 20 18 17 22 22 H 1.08998 * 113.61103 * 89.12089 * 21 20 18 23 23 O 1.42899 * 113.61449 * 220.01588 * 21 20 18 24 24 C 1.53778 * 87.08035 * 334.56830 * 21 20 18 25 25 C 1.39665 * 119.61350 * 179.74825 * 12 11 10 26 26 C 1.37827 * 119.91576 * 0.25075 * 25 12 11 27 27 C 1.38532 * 120.31417 * 359.97438 * 26 25 12 28 28 C 1.38068 * 120.39066 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46738 * 270.15246 * 1 2 3 30 30 H 1.08993 * 109.47109 * 30.15584 * 1 2 3 31 31 H 1.08996 * 109.47015 * 150.15778 * 1 2 3 32 32 H 1.08001 * 126.26125 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47161 * 135.04126 * 5 4 3 34 34 H 0.96700 * 114.00334 * 59.99777 * 6 5 4 35 35 H 1.48497 * 109.99996 * 180.02562 * 7 5 4 36 36 H 1.48501 * 109.99733 * 301.31699 * 7 5 4 37 37 H 1.09008 * 109.46887 * 269.97009 * 9 8 4 38 38 H 1.08993 * 109.47670 * 29.97119 * 9 8 4 39 39 H 1.09000 * 109.47284 * 149.97466 * 9 8 4 40 40 H 0.97000 * 120.00581 * 0.02562 * 15 13 12 41 41 H 1.09004 * 109.47125 * 60.00037 * 16 15 13 42 42 H 1.08995 * 109.47216 * 299.99641 * 16 15 13 43 43 H 1.09004 * 109.46949 * 60.00090 * 17 16 15 44 44 H 1.08995 * 109.46904 * 299.99994 * 17 16 15 45 45 H 1.09004 * 113.61451 * 25.43452 * 20 18 17 46 46 H 1.08994 * 113.61477 * 254.52754 * 20 18 17 47 47 H 0.96698 * 114.00160 * 179.97438 * 23 21 20 48 48 H 1.08999 * 113.61111 * 139.98327 * 24 21 20 49 49 H 1.08999 * 113.61280 * 270.79710 * 24 21 20 50 50 H 1.07999 * 120.03933 * 180.27502 * 25 12 11 51 51 H 1.07997 * 119.84445 * 180.02562 * 26 25 12 52 52 H 1.08004 * 119.80567 * 180.02562 * 27 26 25 53 53 H 1.07998 * 119.96219 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0920 0.0000 4 6 3.6352 0.6466 -0.0061 5 6 4.8648 1.5179 -0.0142 6 8 5.4476 1.5071 -1.3188 7 14 4.3929 3.2618 0.4407 8 6 3.6134 -0.7014 -0.0041 9 6 4.8195 -1.6048 -0.0084 10 7 2.3084 -1.1069 0.0030 11 6 1.8671 -2.4320 0.0062 12 6 1.6389 -3.1011 -1.2045 13 6 1.8639 -2.4096 -2.4886 14 8 2.2436 -1.2546 -2.4987 15 7 1.6486 -3.0584 -3.6501 16 6 1.8725 -2.3720 -4.9249 17 6 1.5576 -3.3253 -6.0796 18 6 1.7909 -2.6083 -7.4109 19 1 2.7127 -2.0266 -7.4237 20 6 1.6194 -3.5180 -8.6388 21 6 0.9230 -2.3301 -9.3236 22 1 1.6075 -1.6725 -9.8593 23 8 -0.2133 -2.7054 -10.1045 24 6 0.5641 -1.8297 -7.9145 25 6 1.2028 -4.4279 -1.1882 26 6 0.9949 -5.0684 0.0143 27 6 1.2170 -4.4026 1.2087 28 6 1.6482 -3.0910 1.2076 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8885 -0.5162 31 1 -0.3633 -0.8914 -0.5114 32 1 1.9667 2.1201 0.0004 33 1 5.5855 1.1362 0.7090 34 1 4.8612 1.8347 -2.0144 35 1 5.5967 4.1314 0.4357 36 1 3.3868 3.7826 -0.5193 37 1 5.1053 -1.8244 -1.0371 38 1 5.6463 -1.1094 0.5006 39 1 4.5793 -2.5340 0.5082 40 1 1.3453 -3.9797 -3.6422 41 1 2.9136 -2.0555 -4.9892 42 1 1.2229 -1.4990 -4.9866 43 1 0.5166 -3.6422 -6.0155 44 1 2.2076 -4.1980 -6.0177 45 1 0.9605 -4.3685 -8.4636 46 1 2.5619 -3.8010 -9.1076 47 1 -0.6558 -1.9625 -10.5374 48 1 0.6546 -0.7497 -7.7985 49 1 -0.3839 -2.2174 -7.5418 50 1 1.0291 -4.9513 -2.1168 51 1 0.6581 -6.0944 0.0256 52 1 1.0519 -4.9126 2.1464 53 1 1.8187 -2.5784 2.1427 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:19 Heat of formation + Delta-G solvation = -7.680485 kcal Electronic energy + Delta-G solvation = -34615.437841 eV Core-core repulsion = 30227.512978 eV Total energy + Delta-G solvation = -4387.924863 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.86116 -41.05819 -40.39067 -39.37385 -37.81995 -36.85945 -35.71118 -34.18460 -33.59671 -32.95375 -31.14380 -30.39016 -30.11840 -27.27657 -26.76147 -26.14883 -24.67819 -24.50775 -23.48098 -22.65977 -21.78548 -20.97625 -20.48993 -20.32761 -18.97923 -18.39571 -17.83292 -17.57357 -17.40379 -16.78197 -16.60336 -16.39916 -16.14189 -15.91582 -15.73901 -15.55535 -15.38479 -15.24879 -14.92511 -14.75963 -14.50126 -14.32636 -14.22684 -14.11843 -14.02697 -13.55785 -13.44162 -13.39226 -13.35432 -13.27629 -13.11210 -12.90561 -12.73871 -12.70300 -12.50823 -12.43696 -12.13896 -12.01912 -11.71358 -11.67080 -11.22952 -11.04959 -10.70494 -10.48272 -10.34725 -10.13180 -10.01354 -9.54224 -8.67762 -4.87247 -0.41857 0.04950 1.20953 1.43437 1.67261 1.74645 1.86422 1.93343 2.00091 2.05624 2.60933 3.26437 3.45872 3.53960 3.55800 3.58348 3.63293 3.75094 3.77509 3.95508 3.96941 4.03820 4.04600 4.17196 4.19506 4.20740 4.24979 4.33628 4.34428 4.39709 4.49144 4.55176 4.55652 4.62049 4.67776 4.68768 4.71769 4.75603 4.76899 4.79865 4.89908 4.94938 4.95838 4.97298 5.05388 5.07771 5.19107 5.21811 5.21996 5.29227 5.31269 5.44082 5.44311 5.64173 6.11732 6.26201 6.39297 6.52754 6.63848 6.83700 7.10356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.033 3.967 3 C -0.207 4.207 4 C -0.204 4.204 5 C -0.049 4.049 6 O -0.553 6.553 7 Si 0.781 3.219 8 C 0.054 3.946 9 C -0.073 4.073 10 N -0.390 5.390 11 C 0.142 3.858 12 C -0.146 4.146 13 C 0.540 3.460 14 O -0.547 6.547 15 N -0.715 5.715 16 C 0.129 3.871 17 C -0.107 4.107 18 C -0.102 4.102 19 H 0.098 0.902 20 C -0.125 4.125 21 C 0.068 3.932 22 H 0.091 0.909 23 O -0.582 6.582 24 C -0.165 4.165 25 C -0.077 4.077 26 C -0.107 4.107 27 C -0.076 4.076 28 C -0.120 4.120 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.378 0.622 35 H -0.302 1.302 36 H -0.294 1.294 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.393 0.607 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.159 0.841 51 H 0.169 0.831 52 H 0.165 0.835 53 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 -7.376 2.127 8.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.231 4.231 4 C -0.211 4.211 5 C -0.158 4.158 6 O -0.360 6.360 7 Si 0.687 3.313 8 C -0.056 4.056 9 C -0.131 4.131 10 N -0.065 5.065 11 C 0.052 3.948 12 C -0.150 4.150 13 C 0.328 3.672 14 O -0.425 6.425 15 N -0.369 5.369 16 C 0.005 3.995 17 C -0.145 4.145 18 C -0.121 4.121 19 H 0.116 0.884 20 C -0.163 4.163 21 C 0.009 3.991 22 H 0.109 0.891 23 O -0.390 6.390 24 C -0.202 4.202 25 C -0.096 4.096 26 C -0.124 4.124 27 C -0.095 4.095 28 C -0.139 4.139 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.159 0.841 33 H 0.131 0.869 34 H 0.226 0.774 35 H -0.230 1.230 36 H -0.221 1.221 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.250 0.750 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.243 0.757 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.177 0.823 51 H 0.187 0.813 52 H 0.183 0.817 53 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.637 -6.865 2.377 8.124 hybrid contribution -0.213 0.334 -1.771 1.814 sum -3.850 -6.531 0.606 7.606 Atomic orbital electron populations 1.20268 0.87274 1.02671 1.03154 1.20472 0.93870 0.85024 1.08188 1.20597 0.92294 0.97729 1.12493 1.19511 0.94746 0.92840 1.13958 1.24514 0.94781 1.09790 0.86714 1.86496 1.44483 1.87359 1.17657 0.93932 0.76573 0.71756 0.88999 1.20235 0.84212 0.94051 1.07093 1.20194 0.93597 0.97633 1.01640 1.41017 1.05276 1.02931 1.57227 1.17844 0.99935 0.83576 0.93438 1.20239 1.06385 0.96430 0.91968 1.18499 0.77868 0.86227 0.84646 1.90903 1.45937 1.17861 1.87838 1.45817 1.68817 1.17243 1.05048 1.21267 1.00565 0.95734 0.81906 1.21660 1.03144 0.98043 0.91622 1.22202 0.98932 0.97694 0.93236 0.88385 1.23123 1.00654 0.97187 0.95321 1.23482 0.88081 0.97710 0.89829 0.89109 1.86480 1.44976 1.39353 1.68232 1.23745 0.98739 1.00612 0.97135 1.21615 0.95697 0.91322 1.00936 1.21690 0.97726 1.01958 0.91069 1.21707 0.94462 0.92659 1.00623 1.21493 0.99780 0.96185 0.96466 0.89573 0.90009 0.93032 0.84141 0.86925 0.77398 1.22984 1.22135 0.92867 0.89497 0.91509 0.74967 0.92814 0.92883 0.90252 0.89647 0.89568 0.90232 0.75710 0.91198 0.89724 0.82307 0.81307 0.81714 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.09 71.24 0.72 0.40 16 2 C 0.03 0.31 5.97 41.02 0.25 0.56 16 3 C -0.21 -2.12 9.27 22.16 0.21 -1.91 16 4 C -0.20 -2.15 5.35 -19.97 -0.11 -2.25 16 5 C -0.05 -0.40 2.60 71.24 0.19 -0.22 16 6 O -0.55 -6.57 12.88 -148.98 -1.92 -8.48 16 7 Si 0.78 4.32 30.86 68.60 2.12 6.43 16 8 C 0.05 0.57 6.01 41.02 0.25 0.82 16 9 C -0.07 -0.53 9.87 71.24 0.70 0.17 16 10 N -0.39 -3.43 1.45 -319.53 -0.46 -3.90 16 11 C 0.14 0.62 4.52 38.50 0.17 0.80 16 12 C -0.15 -0.35 5.89 -19.99 -0.12 -0.47 16 13 C 0.54 3.58 7.77 86.71 0.67 4.25 16 14 O -0.55 -8.28 13.67 -3.99 -0.05 -8.33 16 15 N -0.72 0.19 5.51 -466.23 -2.57 -2.38 16 16 C 0.13 0.05 5.67 86.38 0.49 0.54 16 17 C -0.11 0.51 5.17 30.60 0.16 0.66 16 18 C -0.10 0.33 3.65 -10.27 -0.04 0.29 16 19 H 0.10 -0.32 8.13 -2.39 -0.02 -0.34 16 20 C -0.13 0.23 7.47 31.12 0.23 0.46 16 21 C 0.07 -0.06 5.21 31.12 0.16 0.10 16 22 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 23 O -0.58 -1.05 13.67 -148.98 -2.04 -3.09 16 24 C -0.16 0.29 7.46 31.12 0.23 0.52 16 25 C -0.08 0.42 9.54 22.52 0.21 0.64 16 26 C -0.11 0.90 10.02 22.24 0.22 1.12 16 27 C -0.08 0.52 10.03 22.30 0.22 0.74 16 28 C -0.12 0.12 9.96 22.36 0.22 0.35 16 29 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.05 0.26 7.83 -2.39 -0.02 0.25 16 32 H 0.14 1.12 6.52 -2.91 -0.02 1.10 16 33 H 0.11 0.66 7.50 -2.38 -0.02 0.64 16 34 H 0.38 3.31 8.70 -74.06 -0.64 2.67 16 35 H -0.30 -3.42 7.11 99.48 0.71 -2.72 16 36 H -0.29 -3.08 7.01 99.48 0.70 -2.39 16 37 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.09 0.46 7.50 -2.39 -0.02 0.44 16 39 H 0.07 0.30 7.83 -2.39 -0.02 0.29 16 40 H 0.41 -2.87 6.50 -92.71 -0.60 -3.48 16 41 H 0.05 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.08 -0.44 7.84 -2.38 -0.02 -0.46 16 44 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.09 -0.05 8.10 -2.39 -0.02 -0.07 16 46 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.39 -2.32 9.12 -74.06 -0.68 -3.00 16 48 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.08 -0.05 7.90 -2.39 -0.02 -0.07 16 50 H 0.16 -1.85 6.40 -2.91 -0.02 -1.87 16 51 H 0.17 -2.45 8.06 -2.91 -0.02 -2.47 16 52 H 0.17 -2.01 8.06 -2.91 -0.02 -2.03 16 53 H 0.14 -0.27 8.06 -2.91 -0.02 -0.29 16 Total: 0.00 -25.25 431.01 -0.83 -26.08 By element: Atomic # 1 Polarization: -12.93 SS G_CDS: -0.95 Total: -13.88 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.05 Total: 7.56 kcal Atomic # 7 Polarization: -3.24 SS G_CDS: -3.03 Total: -6.28 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -4.01 Total: -19.91 kcal Atomic # 14 Polarization: 4.32 SS G_CDS: 2.12 Total: 6.43 kcal Total: -25.25 -0.83 -26.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.395 kcal (2) G-P(sol) polarization free energy of solvation -25.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds