Wall clock time and date at job start Tue Mar 9 2021 13:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46821 * 2 1 4 4 C 1.50700 * 109.47185 * 119.99995 * 2 1 3 5 5 C 1.38403 * 119.82534 * 65.00304 * 4 2 1 6 6 C 1.37893 * 120.16807 * 180.27866 * 5 4 2 7 7 C 1.39835 * 119.82392 * 359.51074 * 6 5 4 8 8 C 1.47215 * 120.16558 * 180.23040 * 7 6 5 9 9 C 1.34806 * 119.99742 * 0.25578 * 8 7 6 10 10 C 1.46436 * 119.99593 * 179.97438 * 9 8 7 11 11 O 1.21696 * 119.99891 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99894 * 180.02562 * 10 9 8 13 13 C 1.46494 * 119.99835 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46932 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.47108 * 179.97438 * 14 13 12 16 16 H 1.09000 * 112.84927 * 316.20032 * 15 14 13 17 17 C 1.53782 * 113.61359 * 87.50104 * 15 14 13 18 18 C 1.53780 * 87.07998 * 139.98260 * 17 15 14 19 19 H 1.08997 * 113.69199 * 89.12850 * 18 17 15 20 20 O 1.42904 * 113.61738 * 220.02161 * 18 17 15 21 21 C 1.53782 * 87.08411 * 334.56807 * 18 17 15 22 22 C 1.39830 * 119.66455 * 0.48903 * 7 6 5 23 23 C 1.37896 * 119.82712 * 359.74424 * 22 7 6 24 24 H 0.96704 * 113.99978 * 299.99655 * 1 2 3 25 25 H 1.08998 * 109.47323 * 240.00546 * 2 1 3 26 26 H 1.48495 * 110.00271 * 300.00126 * 3 2 1 27 27 H 1.48505 * 109.99857 * 61.32238 * 3 2 1 28 28 H 1.08002 * 119.91248 * 359.97438 * 5 4 2 29 29 H 1.08004 * 120.08208 * 179.72269 * 6 5 4 30 30 H 1.07996 * 119.99948 * 180.25262 * 8 7 6 31 31 H 1.07996 * 120.00840 * 359.97438 * 9 8 7 32 32 H 0.96995 * 120.00023 * 0.02562 * 12 10 9 33 33 H 1.09003 * 109.47357 * 299.99879 * 13 12 10 34 34 H 1.09000 * 109.47266 * 60.00177 * 13 12 10 35 35 H 1.08994 * 109.47642 * 300.00087 * 14 13 12 36 36 H 1.08994 * 109.47117 * 60.00726 * 14 13 12 37 37 H 1.08998 * 113.61728 * 254.53289 * 17 15 14 38 38 H 1.09005 * 113.61467 * 25.43868 * 17 15 14 39 39 H 0.96696 * 114.00048 * 277.50439 * 20 18 17 40 40 H 1.09000 * 113.61598 * 270.88606 * 21 18 17 41 41 H 1.08996 * 113.69239 * 139.98614 * 21 18 17 42 42 H 1.08003 * 120.09099 * 179.76981 * 22 7 6 43 43 H 1.07992 * 119.91409 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.6825 -2.0619 1.3949 6 6 2.1339 -2.7177 2.5207 7 6 2.8536 -2.0159 3.4927 8 6 3.3434 -2.7097 4.6952 9 6 3.1029 -4.0260 4.8588 10 6 3.5906 -4.7162 6.0547 11 8 4.2127 -4.1014 6.9009 12 7 3.3506 -6.0324 6.2181 13 6 3.8381 -6.7227 7.4147 14 6 3.4335 -8.1970 7.3532 15 6 3.9432 -8.9182 8.6027 16 1 4.9671 -8.6470 8.8599 17 6 2.9697 -8.8536 9.7914 18 6 3.3427 -10.3183 10.0751 19 1 4.2018 -10.4313 10.7364 20 8 2.2312 -11.1266 10.4666 21 6 3.6944 -10.4357 8.5827 22 6 3.1009 -0.6506 3.3194 23 6 2.6388 -0.0078 2.1904 24 1 -0.3933 0.4417 0.7651 25 1 1.7924 -0.5137 -0.8900 26 1 1.5614 2.4680 -1.2084 27 1 1.5878 2.4586 1.2243 28 1 1.1290 -2.6031 0.6417 29 1 1.9350 -3.7714 2.6497 30 1 3.8955 -2.1642 5.4462 31 1 2.5505 -4.5716 4.1081 32 1 2.8552 -6.5224 5.5434 33 1 4.9244 -6.6453 7.4617 34 1 3.4024 -6.2635 8.3020 35 1 2.3473 -8.2741 7.3065 36 1 3.8690 -8.6566 6.4660 37 1 3.2826 -8.1637 10.5751 38 1 1.9292 -8.7173 9.4967 39 1 2.0051 -11.0570 11.4041 40 1 2.8520 -10.7318 7.9575 41 1 4.5921 -11.0227 8.3891 42 1 3.6529 -0.1010 4.0676 43 1 2.8294 1.0465 2.0549 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:31 Heat of formation + Delta-G solvation = -57.294638 kcal Electronic energy + Delta-G solvation = -22846.934355 eV Core-core repulsion = 19245.349110 eV Total energy + Delta-G solvation = -3601.585245 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 304.151 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98498 -40.54893 -40.20936 -37.92312 -36.84527 -35.62160 -35.10716 -32.14142 -31.97993 -30.99295 -27.36504 -26.70161 -25.70409 -24.03132 -23.64450 -22.59566 -21.97874 -20.58383 -20.33715 -18.68544 -18.55092 -18.26501 -17.23576 -16.90903 -16.68300 -16.37198 -16.26861 -16.20459 -15.78253 -15.39141 -15.25825 -15.18087 -14.75859 -14.47464 -14.16211 -14.03201 -13.80761 -13.49844 -13.40352 -13.30486 -12.95726 -12.69889 -12.47524 -12.23667 -12.11665 -11.96851 -11.67562 -11.62392 -11.35794 -11.20652 -11.07747 -10.67017 -10.61999 -10.18128 -9.97828 -9.25726 -4.93151 -0.55924 0.39754 0.88073 1.29745 1.58099 1.94361 2.17618 2.22088 2.80666 3.30672 3.39925 3.51200 3.55649 3.63026 3.70896 3.77103 3.79890 3.95881 3.99790 4.07850 4.17272 4.19506 4.27620 4.35584 4.39190 4.48079 4.57043 4.61376 4.68824 4.80975 4.84273 4.88423 4.94690 4.95587 5.01648 5.09592 5.12293 5.15551 5.26395 5.37147 5.42669 5.47113 5.49277 5.60285 5.90270 6.45695 6.51493 6.86642 7.18680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.083 4.083 3 Si 0.763 3.237 4 C -0.109 4.109 5 C -0.104 4.104 6 C -0.101 4.101 7 C -0.082 4.082 8 C -0.019 4.019 9 C -0.212 4.212 10 C 0.539 3.461 11 O -0.594 6.594 12 N -0.714 5.714 13 C 0.121 3.879 14 C -0.108 4.108 15 C -0.102 4.102 16 H 0.102 0.898 17 C -0.166 4.166 18 C 0.067 3.933 19 H 0.093 0.907 20 O -0.584 6.584 21 C -0.127 4.127 22 C -0.096 4.096 23 C -0.126 4.126 24 H 0.386 0.614 25 H 0.128 0.872 26 H -0.304 1.304 27 H -0.283 1.283 28 H 0.135 0.865 29 H 0.149 0.851 30 H 0.126 0.874 31 H 0.160 0.840 32 H 0.418 0.582 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.393 0.607 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.145 0.855 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -1.953 -1.150 2.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.192 4.192 3 Si 0.669 3.331 4 C -0.109 4.109 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.082 4.082 8 C -0.039 4.039 9 C -0.232 4.232 10 C 0.330 3.670 11 O -0.477 6.477 12 N -0.366 5.366 13 C -0.003 4.003 14 C -0.146 4.146 15 C -0.121 4.121 16 H 0.120 0.880 17 C -0.203 4.203 18 C 0.008 3.992 19 H 0.111 0.889 20 O -0.392 6.392 21 C -0.165 4.165 22 C -0.114 4.114 23 C -0.143 4.143 24 H 0.235 0.765 25 H 0.145 0.855 26 H -0.233 1.233 27 H -0.210 1.210 28 H 0.153 0.847 29 H 0.166 0.834 30 H 0.144 0.856 31 H 0.177 0.823 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.163 0.837 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.490 -1.220 -1.709 2.575 hybrid contribution -1.338 -0.120 1.006 1.678 sum 0.152 -1.340 -0.703 1.521 Atomic orbital electron populations 1.86582 1.18436 1.80351 1.50195 1.25223 0.83459 1.11651 0.98837 0.94042 0.90440 0.72344 0.76242 1.20526 0.98732 0.95072 0.96610 1.21131 0.99136 0.93929 0.98001 1.21685 0.96247 1.01036 0.92926 1.19130 1.00147 0.94191 0.94716 1.22399 0.92859 0.94356 0.94272 1.22999 1.05807 0.96043 0.98339 1.18772 0.79037 0.82443 0.86786 1.90811 1.43285 1.67292 1.46301 1.45832 1.57381 1.08967 1.24378 1.21345 0.99101 0.92616 0.87214 1.21664 1.01986 0.92216 0.98741 1.22226 1.00044 0.94912 0.94874 0.87995 1.23755 1.00185 0.97480 0.98910 1.23508 0.89148 0.89821 0.96702 0.88948 1.86483 1.51160 1.68902 1.32645 1.23134 1.02148 0.96170 0.95037 1.21585 0.98480 0.93494 0.97813 1.21178 0.98622 1.00508 0.93989 0.76472 0.85463 1.23289 1.20997 0.84684 0.83377 0.85622 0.82268 0.74527 0.92239 0.92669 0.90485 0.89650 0.90914 0.89862 0.75731 0.89798 0.90168 0.83723 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.80 12.83 -148.98 -1.91 -2.71 16 2 C -0.08 0.15 2.80 71.24 0.20 0.35 16 3 Si 0.76 -1.98 29.87 68.60 2.05 0.07 16 4 C -0.11 0.16 5.36 -19.79 -0.11 0.05 16 5 C -0.10 0.15 9.66 22.23 0.21 0.37 16 6 C -0.10 0.23 9.41 22.57 0.21 0.44 16 7 C -0.08 0.04 5.87 -20.15 -0.12 -0.08 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 9 C -0.21 0.12 9.41 23.62 0.22 0.34 16 10 C 0.54 2.62 7.74 86.38 0.67 3.29 16 11 O -0.59 -8.45 16.23 -4.34 -0.07 -8.52 16 12 N -0.71 0.88 5.55 -467.34 -2.59 -1.71 16 13 C 0.12 -0.08 5.66 86.38 0.49 0.41 16 14 C -0.11 0.55 5.16 30.60 0.16 0.71 16 15 C -0.10 0.39 3.65 -10.26 -0.04 0.36 16 16 H 0.10 -0.47 8.13 -2.39 -0.02 -0.49 16 17 C -0.17 0.38 7.46 31.12 0.23 0.61 16 18 C 0.07 -0.09 5.21 31.12 0.16 0.08 16 19 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 20 O -0.58 -1.04 13.67 -148.98 -2.04 -3.07 16 21 C -0.13 0.26 7.47 31.12 0.23 0.49 16 22 C -0.10 0.13 9.80 22.57 0.22 0.35 16 23 C -0.13 0.28 8.65 22.23 0.19 0.47 16 24 H 0.39 -1.48 8.70 -74.05 -0.64 -2.13 16 25 H 0.13 -0.46 7.96 -2.39 -0.02 -0.48 16 26 H -0.30 -1.67 7.11 99.48 0.71 -0.96 16 27 H -0.28 -0.33 7.00 99.48 0.70 0.36 16 28 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 29 H 0.15 -1.03 6.17 -2.91 -0.02 -1.05 16 30 H 0.13 0.40 7.52 -2.91 -0.02 0.38 16 31 H 0.16 -1.17 6.07 -2.91 -0.02 -1.19 16 32 H 0.42 -3.26 8.45 -92.71 -0.78 -4.05 16 33 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.08 -0.42 7.84 -2.39 -0.02 -0.44 16 36 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.08 -0.06 7.90 -2.38 -0.02 -0.08 16 39 H 0.39 -2.37 9.12 -74.06 -0.68 -3.04 16 40 H 0.08 -0.04 8.10 -2.39 -0.02 -0.06 16 41 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.14 -0.65 8.06 -2.91 -0.02 -0.67 16 43 H 0.14 -0.76 4.81 -2.91 -0.01 -0.78 16 Total: 0.00 -21.40 360.79 -2.42 -23.83 By element: Atomic # 1 Polarization: -15.31 SS G_CDS: -1.03 Total: -16.34 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 3.17 Total: 8.46 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -2.59 Total: -1.71 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -4.02 Total: -14.30 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.05 Total: 0.07 kcal Total: -21.40 -2.42 -23.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.467 kcal (2) G-P(sol) polarization free energy of solvation -21.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds