Wall clock time and date at job start Tue Mar 9 2021 13:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47147 * 2 1 4 4 C 1.50700 * 109.47150 * 120.00380 * 2 1 3 5 5 C 1.35080 * 126.07185 * 255.02303 * 4 2 1 6 6 N 1.35044 * 107.97866 * 179.77443 * 5 4 2 7 7 C 1.46498 * 125.93467 * 180.19158 * 6 5 4 8 8 C 1.50699 * 109.47314 * 124.99990 * 7 6 5 9 9 O 1.21289 * 120.00069 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00324 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00440 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47371 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47043 * 180.02562 * 12 11 10 14 14 H 1.09004 * 112.85285 * 316.19681 * 13 12 11 15 15 C 1.53784 * 113.61486 * 87.50756 * 13 12 11 16 16 C 1.53783 * 87.08223 * 139.98034 * 15 13 12 17 17 H 1.09001 * 113.61446 * 89.10975 * 16 15 13 18 18 O 1.42896 * 113.68823 * 220.01096 * 16 15 13 19 19 C 1.53783 * 113.61375 * 185.00306 * 13 12 11 20 20 N 1.40078 * 108.13649 * 0.22551 * 6 5 4 21 21 C 1.31621 * 108.10703 * 0.02562 * 20 6 5 22 22 C 1.48417 * 126.03644 * 179.97438 * 21 20 6 23 23 C 1.39328 * 120.11997 * 144.74872 * 22 21 20 24 24 C 1.38022 * 119.87922 * 179.69682 * 23 22 21 25 25 C 1.38320 * 120.11788 * 0.58574 * 24 23 22 26 26 C 1.38320 * 120.24260 * 359.71424 * 25 24 23 27 27 C 1.38022 * 120.11887 * 359.97438 * 26 25 24 28 28 H 0.96697 * 114.00193 * 299.99972 * 1 2 3 29 29 H 1.08998 * 109.46721 * 240.00490 * 2 1 3 30 30 H 1.48497 * 110.00381 * 300.00302 * 3 2 1 31 31 H 1.48508 * 109.99721 * 61.32142 * 3 2 1 32 32 H 1.08002 * 126.01584 * 0.04312 * 5 4 2 33 33 H 1.09000 * 109.47109 * 245.00303 * 7 6 5 34 34 H 1.09003 * 109.46856 * 5.00208 * 7 6 5 35 35 H 0.97009 * 119.99833 * 359.97438 * 10 8 7 36 36 H 1.08991 * 109.47081 * 300.00090 * 11 10 8 37 37 H 1.09003 * 109.46798 * 60.00077 * 11 10 8 38 38 H 1.09000 * 109.47237 * 300.00508 * 12 11 10 39 39 H 1.09003 * 109.46788 * 60.00449 * 12 11 10 40 40 H 1.09001 * 113.61141 * 254.52766 * 15 13 12 41 41 H 1.09000 * 113.61014 * 25.42880 * 15 13 12 42 42 H 0.96704 * 113.99385 * 277.52967 * 18 16 15 43 43 H 1.08996 * 113.61478 * 334.56652 * 19 13 12 44 44 H 1.08995 * 113.61770 * 105.38591 * 19 13 12 45 45 H 1.07998 * 120.05821 * 359.97438 * 23 22 21 46 46 H 1.07998 * 119.94198 * 180.29897 * 24 23 22 47 47 H 1.08001 * 119.87953 * 179.74065 * 25 24 23 48 48 H 1.08003 * 119.93732 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.06226 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4625 -0.1250 2.3258 6 7 2.7836 -1.0988 3.2046 7 6 3.3833 -0.9005 4.5264 8 6 2.5246 -1.5637 5.5723 9 8 1.5116 -2.1453 5.2456 10 7 2.8821 -1.5106 6.8705 11 6 2.0471 -2.1549 7.8873 12 6 2.6734 -1.9478 9.2678 13 6 1.8016 -2.6212 10.3296 14 1 0.7375 -2.4357 10.1834 15 6 2.1448 -4.1025 10.5596 16 6 1.9307 -3.8379 12.0593 17 1 0.9015 -3.9864 12.3863 18 8 2.8806 -4.4962 12.8997 19 6 2.2789 -2.3683 11.7695 20 7 2.4445 -2.3317 2.6325 21 6 1.9337 -2.1031 1.4411 22 6 1.4420 -3.1310 0.4901 23 6 0.3404 -2.8639 -0.3201 24 6 -0.1089 -3.8210 -1.2072 25 6 0.5250 -5.0480 -1.2842 26 6 1.6152 -5.3208 -0.4778 27 6 2.0768 -4.3685 0.4083 28 1 -0.3933 0.4417 0.7650 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2084 31 1 1.5879 2.4585 1.2243 32 1 2.6016 0.9356 2.4746 33 1 4.3805 -1.3402 4.5427 34 1 3.4533 0.1667 4.7371 35 1 3.6925 -1.0457 7.1318 36 1 1.0500 -1.7150 7.8707 37 1 1.9769 -3.2221 7.6770 38 1 3.6704 -2.3880 9.2842 39 1 2.7438 -0.8806 9.4784 40 1 1.4175 -4.7910 10.1295 41 1 3.1733 -4.3572 10.3036 42 1 2.6670 -5.4208 13.0856 43 1 3.3439 -2.1491 11.8443 44 1 1.6607 -1.6559 12.3156 45 1 -0.1583 -1.9080 -0.2572 46 1 -0.9597 -3.6133 -1.8391 47 1 0.1676 -5.7957 -1.9768 48 1 2.1067 -6.2803 -0.5423 49 1 2.9283 -4.5823 1.0372 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_12622748.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:44 Heat of formation + Delta-G solvation = 14.370135 kcal Electronic energy + Delta-G solvation = -30807.811181 eV Core-core repulsion = 26510.954212 eV Total energy + Delta-G solvation = -4296.856968 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49829 -40.85652 -40.28311 -39.74887 -37.90070 -36.86153 -35.65720 -34.79816 -32.48505 -32.04136 -31.64370 -31.23635 -28.73425 -26.74046 -26.18047 -25.41990 -24.00289 -23.48201 -22.63665 -21.90431 -21.46893 -20.97143 -20.45936 -18.84135 -18.55989 -18.19855 -17.79875 -17.38263 -16.96049 -16.70908 -16.48713 -16.32349 -16.11114 -15.82915 -15.54203 -15.48997 -15.36793 -15.24626 -14.82648 -14.45589 -14.31458 -14.25116 -14.09411 -13.77028 -13.65242 -13.42948 -13.37514 -13.25412 -12.71719 -12.54362 -12.49564 -12.38515 -12.14498 -12.00405 -11.70726 -11.69548 -11.61381 -11.33600 -11.17604 -10.74924 -10.63580 -10.40657 -10.22023 -9.87334 -9.76289 -9.29072 -4.83365 0.07099 0.47566 0.81407 1.29710 1.43112 1.45782 1.65736 1.71071 2.05427 2.08938 2.90319 3.26847 3.37091 3.46324 3.48585 3.59665 3.60807 3.69676 3.77396 3.92786 3.97036 4.03238 4.07629 4.13136 4.13482 4.17548 4.23990 4.33796 4.35981 4.45781 4.52818 4.58173 4.61246 4.65665 4.78465 4.80145 4.81514 4.87382 4.92731 4.98810 5.00335 5.10107 5.17638 5.23891 5.31191 5.33454 5.46420 5.57275 5.61772 5.64445 5.91149 6.05889 6.43724 6.57259 6.61419 6.83911 7.13701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.052 4.052 3 Si 0.785 3.215 4 C -0.262 4.262 5 C 0.075 3.925 6 N -0.359 5.359 7 C 0.111 3.889 8 C 0.492 3.508 9 O -0.571 6.571 10 N -0.713 5.713 11 C 0.125 3.875 12 C -0.106 4.106 13 C -0.103 4.103 14 H 0.098 0.902 15 C -0.166 4.166 16 C 0.066 3.934 17 H 0.090 0.910 18 O -0.583 6.583 19 C -0.125 4.125 20 N -0.295 5.295 21 C 0.110 3.890 22 C -0.037 4.037 23 C -0.113 4.113 24 C -0.131 4.131 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.109 4.109 28 H 0.383 0.617 29 H 0.105 0.895 30 H -0.305 1.305 31 H -0.262 1.262 32 H 0.219 0.781 33 H 0.145 0.855 34 H 0.180 0.820 35 H 0.422 0.578 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.393 0.607 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.143 0.857 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 5.192 3.527 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.160 4.160 3 Si 0.688 3.312 4 C -0.273 4.273 5 C -0.071 4.071 6 N -0.141 5.141 7 C -0.013 4.013 8 C 0.277 3.723 9 O -0.448 6.448 10 N -0.367 5.367 11 C 0.001 3.999 12 C -0.144 4.144 13 C -0.122 4.122 14 H 0.117 0.883 15 C -0.204 4.204 16 C 0.008 3.992 17 H 0.108 0.892 18 O -0.391 6.391 19 C -0.162 4.162 20 N -0.117 5.117 21 C -0.055 4.055 22 C -0.039 4.039 23 C -0.132 4.132 24 C -0.149 4.149 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.128 4.128 28 H 0.233 0.767 29 H 0.123 0.877 30 H -0.233 1.233 31 H -0.188 1.188 32 H 0.236 0.764 33 H 0.162 0.838 34 H 0.197 0.803 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.163 0.837 48 H 0.160 0.840 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.292 5.026 3.812 8.234 hybrid contribution -1.493 -0.531 0.195 1.597 sum 3.798 4.495 4.007 7.120 Atomic orbital electron populations 1.86453 1.19171 1.79767 1.50075 1.24636 0.82776 1.12245 0.96370 0.94036 0.89727 0.70148 0.77305 1.20560 1.14073 0.92271 1.00446 1.22853 0.98263 0.96733 0.89203 1.48141 1.48223 1.03647 1.14084 1.22005 0.96947 1.06407 0.75933 1.21182 0.86137 0.80533 0.84444 1.90828 1.28101 1.44272 1.81629 1.45791 1.28808 1.56778 1.05319 1.21273 0.94280 0.97006 0.87358 1.21655 0.99206 1.02563 0.90965 1.22221 1.00504 0.95368 0.94057 0.88335 1.23760 1.02416 0.97190 0.97059 1.23502 0.92664 0.94255 0.88824 0.89172 1.86481 1.51213 1.30509 1.70881 1.23120 1.02572 0.94978 0.95571 1.77692 1.20742 1.04323 1.08907 1.20860 0.98756 0.93710 0.92202 1.18048 0.97119 0.92608 0.96166 1.21991 0.95235 1.01373 0.94595 1.21411 1.00787 0.93727 0.98999 1.21591 0.95442 0.97399 0.99053 1.21356 0.97500 0.99792 0.96184 1.21318 1.00032 0.92838 0.98649 0.76709 0.87662 1.23335 1.18790 0.76431 0.83777 0.80270 0.74008 0.92643 0.93433 0.90260 0.89172 0.91340 0.89748 0.75743 0.89536 0.90164 0.83125 0.84159 0.83660 0.83959 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.13 10.12 -148.98 -1.51 -3.64 16 2 C -0.05 -0.08 1.99 71.24 0.14 0.06 16 3 Si 0.79 -2.97 30.81 68.60 2.11 -0.86 16 4 C -0.26 -1.14 5.34 -19.95 -0.11 -1.25 16 5 C 0.07 -0.06 9.96 83.47 0.83 0.77 16 6 N -0.36 -1.08 3.40 -351.91 -1.20 -2.28 16 7 C 0.11 -0.72 6.99 85.63 0.60 -0.12 16 8 C 0.49 0.80 7.86 87.66 0.69 1.49 16 9 O -0.57 -8.49 15.70 -3.06 -0.05 -8.54 16 10 N -0.71 3.67 5.56 -463.07 -2.57 1.09 16 11 C 0.12 -0.25 5.67 86.38 0.49 0.24 16 12 C -0.11 0.73 5.17 30.59 0.16 0.88 16 13 C -0.10 0.45 3.65 -10.27 -0.04 0.41 16 14 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 15 C -0.17 0.37 7.47 31.12 0.23 0.60 16 16 C 0.07 -0.09 5.21 31.12 0.16 0.07 16 17 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 18 O -0.58 -0.91 13.67 -148.98 -2.04 -2.94 16 19 C -0.12 0.35 7.47 31.12 0.23 0.58 16 20 N -0.30 -3.69 11.63 -48.16 -0.56 -4.25 16 21 C 0.11 1.25 6.74 42.53 0.29 1.53 16 22 C -0.04 -0.45 5.80 -20.04 -0.12 -0.57 16 23 C -0.11 -1.16 8.93 22.48 0.20 -0.95 16 24 C -0.13 -0.93 10.03 22.24 0.22 -0.71 16 25 C -0.12 -0.64 10.04 22.31 0.22 -0.42 16 26 C -0.13 -0.89 10.03 22.24 0.22 -0.67 16 27 C -0.11 -1.16 9.75 22.48 0.22 -0.94 16 28 H 0.38 -0.54 8.70 -74.06 -0.64 -1.18 16 29 H 0.11 0.31 7.82 -2.39 -0.02 0.29 16 30 H -0.31 -1.40 7.11 99.48 0.71 -0.70 16 31 H -0.26 0.87 6.99 99.48 0.70 1.57 16 32 H 0.22 -2.26 6.33 -2.91 -0.02 -2.28 16 33 H 0.14 -1.64 8.14 -2.39 -0.02 -1.66 16 34 H 0.18 -3.08 8.07 -2.39 -0.02 -3.10 16 35 H 0.42 -5.65 8.47 -92.70 -0.79 -6.44 16 36 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 37 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.08 -0.58 7.84 -2.39 -0.02 -0.60 16 39 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.08 -0.08 7.89 -2.39 -0.02 -0.10 16 42 H 0.39 -2.37 9.12 -74.05 -0.68 -3.05 16 43 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 44 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.15 1.49 4.51 -2.91 -0.01 1.48 16 46 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 48 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 49 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 Total: 0.00 -34.24 407.30 -2.23 -36.48 By element: Atomic # 1 Polarization: -14.99 SS G_CDS: -1.08 Total: -16.07 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 4.65 Total: 1.01 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -4.33 Total: -5.44 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -3.59 Total: -15.12 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.11 Total: -0.86 kcal Total: -34.24 -2.23 -36.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_12622748.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.848 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds