Wall clock time and date at job start Tue Mar 9 2021 13:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39284 * 121.03550 * 2 1 4 4 C 1.46500 * 134.19934 * 0.02562 * 3 2 1 5 5 C 1.50703 * 126.60037 * 359.97438 * 4 3 2 6 6 O 1.42896 * 109.46756 * 75.00392 * 5 4 3 7 7 Si 1.86299 * 109.47171 * 195.00416 * 5 4 3 8 8 C 1.34182 * 106.80369 * 180.02562 * 4 3 2 9 9 N 1.36947 * 109.94701 * 359.97438 * 8 4 3 10 10 C 1.37155 * 110.11722 * 0.02562 * 9 8 4 11 11 N 1.32822 * 132.96424 * 180.02562 * 10 9 8 12 12 C 1.31312 * 121.89123 * 179.72892 * 11 10 9 13 13 C 1.39747 * 121.02816 * 180.02562 * 2 1 3 14 14 C 1.47667 * 120.45531 * 359.97438 * 13 2 1 15 15 O 1.21576 * 119.99589 * 354.23481 * 14 13 2 16 16 N 1.34770 * 120.00110 * 174.24203 * 14 13 2 17 17 C 1.46502 * 120.00151 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47470 * 179.97438 * 17 16 14 19 19 C 1.52994 * 109.47567 * 180.02562 * 18 17 16 20 20 H 1.09003 * 112.84633 * 316.19033 * 19 18 17 21 21 C 1.54047 * 113.62395 * 87.50122 * 19 18 17 22 22 C 1.53778 * 86.99058 * 139.97873 * 21 19 18 23 23 H 1.09008 * 113.60889 * 89.16209 * 22 21 19 24 24 O 1.42891 * 113.62073 * 219.98302 * 22 21 19 25 25 C 1.53781 * 87.17360 * 334.57608 * 22 21 19 26 26 H 1.08997 * 109.47089 * 263.76161 * 1 2 3 27 27 H 1.09003 * 109.46665 * 23.75837 * 1 2 3 28 28 H 1.08991 * 109.47021 * 143.75591 * 1 2 3 29 29 H 1.09000 * 109.47196 * 315.00302 * 5 4 3 30 30 H 0.96700 * 114.00058 * 179.97438 * 6 5 4 31 31 H 1.48497 * 109.99734 * 178.68429 * 7 5 4 32 32 H 1.48498 * 110.00037 * 300.00144 * 7 5 4 33 33 H 1.07994 * 125.02406 * 180.02562 * 8 4 3 34 34 H 0.97005 * 124.94078 * 180.02562 * 9 8 4 35 35 H 1.07992 * 119.31157 * 180.27317 * 12 11 10 36 36 H 0.97006 * 120.00406 * 359.97438 * 16 14 13 37 37 H 1.08998 * 109.47297 * 59.99613 * 17 16 14 38 38 H 1.09001 * 109.46885 * 299.99805 * 17 16 14 39 39 H 1.09007 * 109.47367 * 59.99684 * 18 17 16 40 40 H 1.09009 * 109.46875 * 300.00198 * 18 17 16 41 41 H 1.09005 * 113.60832 * 25.47798 * 21 19 18 42 42 H 1.09000 * 113.69613 * 254.49957 * 21 19 18 43 43 H 0.96707 * 114.00285 * 279.14234 * 24 22 21 44 44 H 1.08996 * 113.61997 * 140.02014 * 25 22 21 45 45 H 1.09003 * 113.60998 * 270.84243 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2252 1.1935 0.0000 4 6 1.8518 2.6101 0.0005 5 6 0.4529 3.1706 0.0006 6 8 -0.1189 3.0237 1.3019 7 14 0.5075 4.9766 -0.4535 8 6 2.9950 3.3125 -0.0004 9 7 4.0670 2.4603 -0.0008 10 6 3.6348 1.1586 -0.0008 11 7 4.2721 -0.0067 -0.0006 12 6 3.6267 -1.1503 0.0046 13 6 2.2274 -1.1975 -0.0005 14 6 1.5224 -2.4950 -0.0005 15 8 0.3118 -2.5290 0.1057 16 7 2.2210 -3.6415 -0.1182 17 6 1.5216 -4.9288 -0.1176 18 6 2.5390 -6.0621 -0.2637 19 6 1.8087 -7.4064 -0.2638 20 1 1.0348 -7.4677 0.5014 21 6 1.3347 -7.8514 -1.6604 22 6 1.7636 -9.2739 -1.2637 23 1 0.9765 -9.8463 -0.7728 24 8 2.3982 -9.9963 -2.3207 25 6 2.7525 -8.6204 -0.2838 26 1 -0.3633 -0.1117 1.0215 27 1 -0.3633 0.9406 -0.4140 28 1 -0.3633 -0.8287 -0.6075 29 1 -0.1547 2.6314 -0.7262 30 1 -1.0210 3.3642 1.3759 31 1 -0.8687 5.5334 -0.4879 32 1 1.3328 5.7228 0.5299 33 1 3.0601 4.3905 0.0001 34 1 4.9968 2.7371 -0.0010 35 1 4.1869 -2.0735 0.0090 36 1 3.1869 -3.6144 -0.2032 37 1 0.8198 -4.9614 -0.9509 38 1 0.9782 -5.0466 0.8199 39 1 3.2412 -6.0297 0.5694 40 1 3.0822 -5.9440 -1.2014 41 1 1.9225 -7.4296 -2.4757 42 1 0.2606 -7.7457 -1.8127 43 1 1.7819 -10.3899 -2.9534 44 1 2.8222 -9.1352 0.6744 45 1 3.7276 -8.4098 -0.7231 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_12890568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:54 Heat of formation + Delta-G solvation = -21.695701 kcal Electronic energy + Delta-G solvation = -27817.710295 eV Core-core repulsion = 23803.053154 eV Total energy + Delta-G solvation = -4014.657141 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.85814 -41.01456 -40.28520 -38.75662 -37.84353 -36.87237 -35.75144 -34.98925 -32.36926 -31.95180 -30.50027 -28.93426 -26.71605 -26.56028 -25.71834 -24.47606 -23.81448 -22.53930 -21.83711 -20.49623 -20.31865 -19.25854 -18.78913 -18.49629 -18.30360 -17.64772 -17.15114 -16.80056 -16.60370 -16.31151 -16.06953 -15.59506 -15.40255 -15.27076 -15.17961 -14.98379 -14.71551 -14.29256 -14.09850 -13.93402 -13.74736 -13.56671 -13.37389 -13.29523 -13.27528 -13.06283 -12.65438 -12.64472 -12.39606 -11.98255 -11.93822 -11.64069 -11.24577 -11.16132 -11.11739 -10.67489 -10.46765 -10.24019 -10.16774 -9.62948 -9.13587 -4.85785 -0.35737 -0.09153 1.32441 1.38416 1.61273 1.70009 1.79102 1.99925 2.08001 2.74062 3.29489 3.32962 3.37825 3.54436 3.58806 3.65257 3.66419 3.72804 3.77932 3.82863 4.02532 4.11459 4.12281 4.17880 4.27793 4.31230 4.36015 4.42628 4.59194 4.64574 4.70066 4.72799 4.78856 4.83999 4.87219 4.98053 4.98777 5.04888 5.14048 5.18653 5.22933 5.29087 5.35229 5.45880 5.52574 5.71757 6.20413 6.46634 6.66275 6.81334 6.88626 7.15532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.062 3.938 3 C -0.167 4.167 4 C -0.160 4.160 5 C -0.061 4.061 6 O -0.558 6.558 7 Si 0.777 3.223 8 C 0.088 3.912 9 N -0.559 5.559 10 C 0.289 3.711 11 N -0.516 5.516 12 C 0.180 3.820 13 C -0.242 4.242 14 C 0.569 3.431 15 O -0.567 6.567 16 N -0.715 5.715 17 C 0.124 3.876 18 C -0.110 4.110 19 C -0.100 4.100 20 H 0.102 0.898 21 C -0.165 4.165 22 C 0.066 3.934 23 H 0.091 0.909 24 O -0.584 6.584 25 C -0.128 4.128 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.391 0.609 31 H -0.290 1.290 32 H -0.278 1.278 33 H 0.217 0.783 34 H 0.439 0.561 35 H 0.195 0.805 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.393 0.607 44 H 0.078 0.922 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 1.903 -3.022 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.054 3.946 3 C -0.175 4.175 4 C -0.167 4.167 5 C -0.169 4.169 6 O -0.368 6.368 7 Si 0.679 3.321 8 C -0.039 4.039 9 N -0.166 5.166 10 C 0.055 3.945 11 N -0.229 5.229 12 C 0.012 3.988 13 C -0.249 4.249 14 C 0.357 3.643 15 O -0.448 6.448 16 N -0.367 5.367 17 C 0.001 3.999 18 C -0.148 4.148 19 C -0.119 4.119 20 H 0.120 0.880 21 C -0.202 4.202 22 C 0.008 3.992 23 H 0.109 0.891 24 O -0.392 6.392 25 C -0.165 4.165 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.241 0.759 31 H -0.217 1.217 32 H -0.204 1.204 33 H 0.233 0.767 34 H 0.280 0.720 35 H 0.212 0.788 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.243 0.757 44 H 0.097 0.903 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.973 2.741 -2.274 4.639 hybrid contribution -1.559 -0.579 0.623 1.776 sum 1.413 2.163 -1.651 3.066 Atomic orbital electron populations 1.21011 0.89182 1.03500 1.03073 1.20079 0.97257 0.90035 0.87263 1.19758 0.93400 0.94378 1.09921 1.19728 0.94513 0.90016 1.12465 1.24548 0.91523 1.13302 0.87525 1.86599 1.34879 1.84533 1.30741 0.94160 0.80379 0.70429 0.87108 1.22233 0.84154 0.97103 1.00418 1.41563 1.10520 1.01743 1.62797 1.18757 0.89485 0.86835 0.99429 1.66519 1.40815 0.96416 1.19140 1.22988 0.89731 0.95294 0.90823 1.20516 0.95475 0.93397 1.15546 1.17981 0.86452 0.84012 0.75862 1.90733 1.15060 1.87597 1.51394 1.45806 1.11490 1.05272 1.74142 1.21369 0.95459 0.81272 1.01827 1.21684 0.97468 0.91843 1.03819 1.22257 0.98585 0.93208 0.97864 0.87977 1.23797 1.01835 0.97015 0.97586 1.23511 0.95993 0.90750 0.88983 0.89095 1.86482 1.39129 1.72754 1.40856 1.23130 0.98479 0.95948 0.98970 0.91092 0.90384 0.89705 0.90058 0.75853 1.21693 1.20427 0.76674 0.71971 0.78819 0.74925 0.92195 0.92012 0.89652 0.90354 0.89781 0.90826 0.75749 0.90306 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.69 71.24 0.62 -0.31 16 2 C 0.06 0.56 5.98 -19.25 -0.12 0.44 16 3 C -0.17 -1.28 6.16 -20.19 -0.12 -1.40 16 4 C -0.16 -0.47 5.61 -18.63 -0.10 -0.57 16 5 C -0.06 0.01 2.05 71.24 0.15 0.15 16 6 O -0.56 -1.72 12.86 -148.98 -1.92 -3.63 16 7 Si 0.78 -3.62 30.80 68.60 2.11 -1.51 16 8 C 0.09 -0.19 10.44 82.97 0.87 0.67 16 9 N -0.56 0.41 6.04 -192.26 -1.16 -0.75 16 10 C 0.29 1.77 8.42 134.02 1.13 2.90 16 11 N -0.52 -3.20 10.37 -191.75 -1.99 -5.19 16 12 C 0.18 0.53 10.67 85.20 0.91 1.44 16 13 C -0.24 -1.59 5.89 -19.99 -0.12 -1.71 16 14 C 0.57 3.96 7.72 86.74 0.67 4.63 16 15 O -0.57 -7.76 13.49 -3.95 -0.05 -7.81 16 16 N -0.71 0.24 5.51 -466.16 -2.57 -2.33 16 17 C 0.12 -0.12 5.66 86.38 0.49 0.37 16 18 C -0.11 0.58 5.17 30.59 0.16 0.73 16 19 C -0.10 0.40 3.66 -10.18 -0.04 0.36 16 20 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 21 C -0.16 0.42 7.48 31.21 0.23 0.65 16 22 C 0.07 -0.08 5.20 31.12 0.16 0.08 16 23 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 24 O -0.58 -1.10 13.67 -148.98 -2.04 -3.14 16 25 C -0.13 0.24 7.47 31.12 0.23 0.47 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.38 5.06 -2.39 -0.01 0.37 16 28 H 0.08 0.90 5.94 -2.39 -0.01 0.89 16 29 H 0.08 -0.14 6.05 -2.39 -0.01 -0.16 16 30 H 0.39 -1.86 8.74 -74.06 -0.65 -2.50 16 31 H -0.29 -0.18 7.11 99.48 0.71 0.53 16 32 H -0.28 0.13 7.04 99.48 0.70 0.83 16 33 H 0.22 -2.08 6.31 -2.91 -0.02 -2.10 16 34 H 0.44 -2.90 8.96 -92.70 -0.83 -3.73 16 35 H 0.20 -1.07 6.43 -2.91 -0.02 -1.09 16 36 H 0.41 -2.64 6.55 -92.70 -0.61 -3.25 16 37 H 0.06 0.09 8.14 -2.39 -0.02 0.08 16 38 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.08 -0.58 8.14 -2.38 -0.02 -0.60 16 40 H 0.08 -0.44 7.85 -2.38 -0.02 -0.46 16 41 H 0.08 -0.09 7.90 -2.38 -0.02 -0.11 16 42 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.39 -2.32 9.12 -74.05 -0.68 -3.00 16 44 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.08 -0.02 8.10 -2.39 -0.02 -0.04 16 Total: 0.00 -26.21 365.29 -4.14 -30.35 By element: Atomic # 1 Polarization: -13.27 SS G_CDS: -1.64 Total: -14.91 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 5.12 Total: 8.92 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -5.72 Total: -8.27 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -4.01 Total: -14.58 kcal Atomic # 14 Polarization: -3.62 SS G_CDS: 2.11 Total: -1.51 kcal Total: -26.21 -4.14 -30.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_12890568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.653 kcal (2) G-P(sol) polarization free energy of solvation -26.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds