Wall clock time and date at job start Tue Mar 9 2021 13:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46976 * 2 1 4 4 C 1.50691 * 109.47269 * 120.00137 * 2 1 3 5 5 C 1.38581 * 120.32708 * 65.02256 * 4 2 1 6 6 C 1.38631 * 118.49375 * 179.73043 * 5 4 2 7 7 C 1.39270 * 119.05655 * 0.46966 * 6 5 4 8 8 C 1.48171 * 119.71925 * 179.79699 * 7 6 5 9 9 O 1.21512 * 120.00026 * 359.72498 * 8 7 6 10 10 N 1.34784 * 119.99714 * 179.72571 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47535 * 180.02562 * 12 11 10 14 14 H 1.09003 * 112.85132 * 43.79497 * 13 12 11 15 15 C 1.53777 * 113.61945 * 174.99773 * 13 12 11 16 16 C 1.53773 * 87.08354 * 139.97917 * 15 13 12 17 17 H 1.09001 * 113.61761 * 89.11479 * 16 15 13 18 18 O 1.42899 * 113.61759 * 220.02098 * 16 15 13 19 19 C 1.53783 * 87.08255 * 334.56683 * 16 15 13 20 20 N 1.32745 * 120.55533 * 359.51818 * 7 6 5 21 21 C 1.31490 * 121.64542 * 0.25831 * 20 7 6 22 22 H 0.96700 * 114.00231 * 300.00269 * 1 2 3 23 23 H 1.09006 * 109.47149 * 240.00148 * 2 1 3 24 24 H 1.48495 * 110.00299 * 299.99654 * 3 2 1 25 25 H 1.48501 * 110.00081 * 61.32297 * 3 2 1 26 26 H 1.08009 * 120.75108 * 359.97332 * 5 4 2 27 27 H 1.08000 * 120.47432 * 180.27166 * 6 5 4 28 28 H 0.96995 * 120.00015 * 359.72530 * 10 8 7 29 29 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 30 30 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 31 31 H 1.09005 * 109.46767 * 299.99934 * 12 11 10 32 32 H 1.08996 * 109.47766 * 59.99412 * 12 11 10 33 33 H 1.08999 * 113.61501 * 254.53209 * 15 13 12 34 34 H 1.09002 * 113.61060 * 25.34643 * 15 13 12 35 35 H 0.96699 * 114.00619 * 179.97438 * 18 16 15 36 36 H 1.08996 * 113.61833 * 270.88213 * 19 16 15 37 37 H 1.09006 * 113.61434 * 139.98080 * 19 16 15 38 38 H 1.07999 * 119.55436 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6884 -2.0635 1.4053 6 6 2.1728 -2.6800 2.5486 7 6 2.8744 -1.9200 3.4813 8 6 3.3948 -2.5630 4.7106 9 8 3.2044 -3.7474 4.9040 10 7 4.0794 -1.8341 5.6143 11 6 4.5934 -2.4697 6.8300 12 6 5.3255 -1.4287 7.6792 13 6 5.8630 -2.0925 8.9486 14 1 6.3276 -3.0596 8.7563 15 6 6.7224 -1.1579 9.8161 16 6 6.0348 -1.7887 11.0383 17 1 6.5457 -2.6734 11.4185 18 8 5.7146 -0.8472 12.0645 19 6 4.8533 -2.1118 10.1084 20 7 3.0856 -0.6257 3.2755 21 6 2.6413 -0.0170 2.1980 22 1 -0.3934 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5615 2.4679 -1.2085 25 1 1.5879 2.4585 1.2243 26 1 1.1375 -2.6258 0.6658 27 1 2.0058 -3.7339 2.7153 28 1 4.2348 -0.8895 5.4580 29 1 3.7635 -2.8856 7.4013 30 1 5.2838 -3.2682 6.5584 31 1 6.1554 -1.0124 7.1080 32 1 4.6349 -0.6303 7.9508 33 1 7.7903 -1.3683 9.7589 34 1 6.4914 -0.1013 9.6805 35 1 5.2816 -1.2380 12.8358 36 1 4.1103 -1.3161 10.0538 37 1 4.4123 -3.0925 10.2872 38 1 2.8328 1.0375 2.0647 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17837616_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:11 Heat of formation + Delta-G solvation = -57.196268 kcal Electronic energy + Delta-G solvation = -20735.899282 eV Core-core repulsion = 17352.656152 eV Total energy + Delta-G solvation = -3383.243131 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.86017 -40.60405 -40.03532 -38.09414 -36.82289 -35.62226 -33.93995 -33.01663 -31.54021 -28.00112 -26.77812 -25.70686 -25.04570 -23.66344 -22.63914 -21.78657 -20.53513 -19.28423 -18.76317 -18.37413 -17.84137 -16.86132 -16.77255 -16.62192 -16.47433 -16.17018 -16.08261 -15.52350 -15.37004 -15.03941 -14.56544 -14.44301 -14.26976 -14.01533 -13.52107 -13.45535 -13.35169 -12.74784 -12.72852 -12.51922 -12.15769 -12.05151 -11.75131 -11.34270 -11.22344 -11.11467 -10.80003 -10.76096 -10.62080 -10.37850 -10.04997 -5.11843 -0.58774 0.03773 1.07141 1.43077 1.63684 1.82178 2.01479 2.68714 2.92722 3.15806 3.20604 3.40221 3.43074 3.53959 3.62709 3.69791 3.72226 3.89241 3.90427 4.02625 4.12073 4.21836 4.30757 4.32567 4.50268 4.51755 4.61606 4.75433 4.76373 4.81997 4.88320 4.93160 4.95689 5.05384 5.17935 5.32958 5.38920 5.39925 6.18775 6.32258 6.62024 6.68914 7.14186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.074 4.074 3 Si 0.687 3.313 4 C -0.149 4.149 5 C -0.052 4.052 6 C -0.108 4.108 7 C 0.081 3.919 8 C 0.571 3.429 9 O -0.529 6.529 10 N -0.711 5.711 11 C 0.118 3.882 12 C -0.119 4.119 13 C -0.106 4.106 14 H 0.097 0.903 15 C -0.124 4.124 16 C 0.073 3.927 17 H 0.082 0.918 18 O -0.561 6.561 19 C -0.167 4.167 20 N -0.454 5.454 21 C 0.102 3.898 22 H 0.378 0.622 23 H 0.125 0.875 24 H -0.251 1.251 25 H -0.255 1.255 26 H 0.148 0.852 27 H 0.153 0.847 28 H 0.412 0.588 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.379 0.621 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 1.508 -0.327 2.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.332 6.332 2 C -0.184 4.184 3 Si 0.587 3.413 4 C -0.151 4.151 5 C -0.078 4.078 6 C -0.129 4.129 7 C -0.057 4.057 8 C 0.355 3.645 9 O -0.405 6.405 10 N -0.363 5.363 11 C -0.005 4.005 12 C -0.157 4.157 13 C -0.125 4.125 14 H 0.115 0.885 15 C -0.162 4.162 16 C 0.014 3.986 17 H 0.100 0.900 18 O -0.367 6.367 19 C -0.205 4.205 20 N -0.165 5.165 21 C -0.058 4.058 22 H 0.226 0.774 23 H 0.143 0.857 24 H -0.176 1.176 25 H -0.180 1.180 26 H 0.165 0.835 27 H 0.170 0.830 28 H 0.248 0.752 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.226 0.774 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 2.541 2.033 -0.475 3.289 hybrid contribution -1.739 -0.656 0.178 1.868 sum 0.802 1.376 -0.297 1.620 Atomic orbital electron populations 1.86640 1.17190 1.79973 1.49391 1.25017 0.84279 1.11362 0.97752 0.94970 0.91417 0.73982 0.80934 1.21583 0.99609 0.95767 0.98174 1.21569 0.95758 0.93746 0.96751 1.22232 0.95371 1.02323 0.92971 1.21180 0.98474 0.90262 0.95763 1.17851 0.78353 0.85939 0.82320 1.90820 1.58004 1.14813 1.76887 1.45843 1.55284 1.14158 1.20984 1.21456 0.98558 0.95954 0.84575 1.21748 1.00327 0.97977 0.95665 1.22240 0.97595 0.99739 0.92960 0.88456 1.23116 0.99394 1.00450 0.93216 1.23348 0.96109 0.92149 0.86948 0.90025 1.86530 1.81896 1.37234 1.31015 1.23797 0.97685 1.02615 0.96361 1.67528 1.18219 1.09453 1.21258 1.22688 0.94158 1.00036 0.88873 0.77426 0.85724 1.17583 1.17953 0.83458 0.82961 0.75171 0.91061 0.91040 0.90647 0.90780 0.90664 0.89006 0.77372 0.89119 0.91115 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.22 12.84 -35.23 -0.45 -0.24 16 2 C -0.07 0.15 2.82 36.00 0.10 0.25 16 3 Si 0.69 -1.83 29.91 -169.99 -5.08 -6.91 16 4 C -0.15 0.18 5.36 -104.36 -0.56 -0.38 16 5 C -0.05 0.03 9.83 -39.31 -0.39 -0.35 16 6 C -0.11 -0.09 9.63 -39.05 -0.38 -0.47 16 7 C 0.08 0.15 6.75 -83.01 -0.56 -0.41 16 8 C 0.57 1.76 7.81 -12.18 -0.10 1.67 16 9 O -0.53 -3.21 16.32 5.36 0.09 -3.12 16 10 N -0.71 -0.47 5.55 -61.14 -0.34 -0.81 16 11 C 0.12 -0.03 5.66 -4.04 -0.02 -0.05 16 12 C -0.12 0.23 5.16 -26.73 -0.14 0.10 16 13 C -0.11 0.19 3.65 -89.81 -0.33 -0.14 16 14 H 0.10 -0.22 8.13 -51.93 -0.42 -0.64 16 15 C -0.12 0.10 7.47 -25.93 -0.19 -0.09 16 16 C 0.07 -0.04 5.21 -25.92 -0.14 -0.18 16 17 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 18 O -0.56 -0.48 13.67 -35.23 -0.48 -0.96 16 19 C -0.17 0.20 7.46 -25.92 -0.19 0.00 16 20 N -0.45 -0.42 9.54 -9.80 -0.09 -0.51 16 21 C 0.10 -0.08 9.84 -17.56 -0.17 -0.25 16 22 H 0.38 -1.18 8.70 45.56 0.40 -0.79 16 23 H 0.13 -0.37 7.96 -51.93 -0.41 -0.78 16 24 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 25 H -0.25 0.24 7.01 56.52 0.40 0.63 16 26 H 0.15 -0.30 8.06 -52.48 -0.42 -0.72 16 27 H 0.15 0.09 7.64 -52.49 -0.40 -0.32 16 28 H 0.41 -0.32 7.80 -40.82 -0.32 -0.64 16 29 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.07 -0.14 7.84 -51.93 -0.41 -0.54 16 33 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.09 -0.01 8.10 -51.93 -0.42 -0.43 16 35 H 0.38 -1.17 9.12 45.56 0.42 -0.76 16 36 H 0.09 -0.04 7.90 -51.93 -0.41 -0.45 16 37 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 38 H 0.16 -0.49 4.86 -52.49 -0.25 -0.74 16 LS Contribution 323.58 15.07 4.88 4.88 Total: 0.00 -8.01 323.58 -8.95 -16.95 By element: Atomic # 1 Polarization: -4.57 SS G_CDS: -4.40 Total: -8.96 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.06 Total: -0.31 kcal Atomic # 7 Polarization: -0.89 SS G_CDS: -0.43 Total: -1.33 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -0.85 Total: -4.31 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.08 Total: -6.91 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -8.01 -8.95 -16.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.245 kcal (2) G-P(sol) polarization free energy of solvation -8.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds