Wall clock time and date at job start Tue Mar 9 2021 13:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86300 * 109.46976 * 2 1 4 4 C 1.50691 * 109.47269 * 120.00137 * 2 1 3 5 5 C 1.38581 * 120.32708 * 65.02256 * 4 2 1 6 6 C 1.38631 * 118.49375 * 179.73043 * 5 4 2 7 7 C 1.39270 * 119.05655 * 0.46966 * 6 5 4 8 8 C 1.48171 * 119.71925 * 179.79699 * 7 6 5 9 9 O 1.21512 * 120.00026 * 359.72498 * 8 7 6 10 10 N 1.34784 * 119.99714 * 179.72571 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.47535 * 180.02562 * 12 11 10 14 14 H 1.09003 * 112.85132 * 43.79497 * 13 12 11 15 15 C 1.53777 * 113.61945 * 174.99773 * 13 12 11 16 16 C 1.53773 * 87.08354 * 139.97917 * 15 13 12 17 17 H 1.09001 * 113.61761 * 89.11479 * 16 15 13 18 18 O 1.42899 * 113.61759 * 220.02098 * 16 15 13 19 19 C 1.53783 * 87.08255 * 334.56683 * 16 15 13 20 20 N 1.32745 * 120.55533 * 359.51818 * 7 6 5 21 21 C 1.31490 * 121.64542 * 0.25831 * 20 7 6 22 22 H 0.96700 * 114.00231 * 300.00269 * 1 2 3 23 23 H 1.09006 * 109.47149 * 240.00148 * 2 1 3 24 24 H 1.48495 * 110.00299 * 299.99654 * 3 2 1 25 25 H 1.48501 * 110.00081 * 61.32297 * 3 2 1 26 26 H 1.08009 * 120.75108 * 359.97332 * 5 4 2 27 27 H 1.08000 * 120.47432 * 180.27166 * 6 5 4 28 28 H 0.96995 * 120.00015 * 359.72530 * 10 8 7 29 29 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 30 30 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 31 31 H 1.09005 * 109.46767 * 299.99934 * 12 11 10 32 32 H 1.08996 * 109.47766 * 59.99412 * 12 11 10 33 33 H 1.08999 * 113.61501 * 254.53209 * 15 13 12 34 34 H 1.09002 * 113.61060 * 25.34643 * 15 13 12 35 35 H 0.96699 * 114.00619 * 179.97438 * 18 16 15 36 36 H 1.08996 * 113.61833 * 270.88213 * 19 16 15 37 37 H 1.09006 * 113.61434 * 139.98080 * 19 16 15 38 38 H 1.07999 * 119.55436 * 180.02562 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6884 -2.0635 1.4053 6 6 2.1728 -2.6800 2.5486 7 6 2.8744 -1.9200 3.4813 8 6 3.3948 -2.5630 4.7106 9 8 3.2044 -3.7474 4.9040 10 7 4.0794 -1.8341 5.6143 11 6 4.5934 -2.4697 6.8300 12 6 5.3255 -1.4287 7.6792 13 6 5.8630 -2.0925 8.9486 14 1 6.3276 -3.0596 8.7563 15 6 6.7224 -1.1579 9.8161 16 6 6.0348 -1.7887 11.0383 17 1 6.5457 -2.6734 11.4185 18 8 5.7146 -0.8472 12.0645 19 6 4.8533 -2.1118 10.1084 20 7 3.0856 -0.6257 3.2755 21 6 2.6413 -0.0170 2.1980 22 1 -0.3934 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5615 2.4679 -1.2085 25 1 1.5879 2.4585 1.2243 26 1 1.1375 -2.6258 0.6658 27 1 2.0058 -3.7339 2.7153 28 1 4.2348 -0.8895 5.4580 29 1 3.7635 -2.8856 7.4013 30 1 5.2838 -3.2682 6.5584 31 1 6.1554 -1.0124 7.1080 32 1 4.6349 -0.6303 7.9508 33 1 7.7903 -1.3683 9.7589 34 1 6.4914 -0.1013 9.6805 35 1 5.2816 -1.2380 12.8358 36 1 4.1103 -1.3161 10.0538 37 1 4.4123 -3.0925 10.2872 38 1 2.8328 1.0375 2.0647 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_13287726.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:11 Heat of formation + Delta-G solvation = -60.244624 kcal Electronic energy + Delta-G solvation = -20736.031469 eV Core-core repulsion = 17352.656152 eV Total energy + Delta-G solvation = -3383.375318 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89597 -40.57954 -40.10672 -38.02312 -36.86873 -35.68530 -33.91524 -33.02651 -31.53177 -27.96924 -26.69329 -25.66997 -25.01890 -23.63212 -22.59412 -21.87623 -20.44946 -19.33606 -18.71150 -18.34161 -17.84394 -16.88624 -16.81238 -16.59072 -16.40040 -16.17029 -16.04661 -15.52903 -15.33633 -15.09057 -14.55765 -14.39481 -14.25302 -14.04994 -13.48937 -13.39182 -13.31197 -12.70923 -12.63807 -12.47868 -12.14070 -11.96979 -11.70167 -11.45826 -11.14370 -11.08936 -10.72042 -10.69421 -10.62250 -10.43739 -10.12422 -4.92165 -0.61647 0.06849 1.24381 1.51809 1.59310 1.94271 1.96889 2.64289 2.92779 3.32011 3.33594 3.49311 3.52274 3.63914 3.66513 3.76900 3.80401 3.91533 4.01131 4.09069 4.12877 4.25908 4.39620 4.47103 4.59413 4.61952 4.66177 4.82327 4.84309 4.87486 4.95555 4.97872 5.02103 5.12806 5.26891 5.30757 5.37858 5.50681 6.24538 6.41853 6.59626 6.88206 7.00883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.078 4.078 3 Si 0.766 3.234 4 C -0.139 4.139 5 C -0.052 4.052 6 C -0.116 4.116 7 C 0.063 3.937 8 C 0.566 3.434 9 O -0.569 6.569 10 N -0.701 5.701 11 C 0.119 3.881 12 C -0.109 4.109 13 C -0.100 4.100 14 H 0.105 0.895 15 C -0.128 4.128 16 C 0.068 3.932 17 H 0.094 0.906 18 O -0.584 6.584 19 C -0.166 4.166 20 N -0.461 5.461 21 C 0.100 3.900 22 H 0.388 0.612 23 H 0.137 0.863 24 H -0.300 1.300 25 H -0.274 1.274 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.420 0.580 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.393 0.607 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 2.032 -0.757 3.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.188 4.188 3 Si 0.671 3.329 4 C -0.142 4.142 5 C -0.078 4.078 6 C -0.137 4.137 7 C -0.074 4.074 8 C 0.351 3.649 9 O -0.448 6.448 10 N -0.352 5.352 11 C -0.004 4.004 12 C -0.147 4.147 13 C -0.119 4.119 14 H 0.123 0.877 15 C -0.165 4.165 16 C 0.009 3.991 17 H 0.112 0.888 18 O -0.392 6.392 19 C -0.203 4.203 20 N -0.172 5.172 21 C -0.060 4.060 22 H 0.238 0.762 23 H 0.155 0.845 24 H -0.227 1.227 25 H -0.200 1.200 26 H 0.180 0.820 27 H 0.166 0.834 28 H 0.257 0.743 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.896 2.561 -0.869 3.963 hybrid contribution -1.888 -0.757 0.276 2.053 sum 1.008 1.804 -0.593 2.150 Atomic orbital electron populations 1.86617 1.17965 1.80366 1.50251 1.25216 0.83711 1.12049 0.97776 0.94054 0.90088 0.71639 0.77139 1.21682 0.98795 0.95492 0.98201 1.21754 0.95435 0.94160 0.96412 1.22289 0.95637 1.02295 0.93470 1.21076 0.99658 0.90898 0.95756 1.18128 0.78205 0.85629 0.82936 1.90787 1.59732 1.16368 1.77871 1.45847 1.54225 1.14419 1.20684 1.21477 0.98210 0.96389 0.84311 1.21670 1.00365 0.97337 0.95340 1.22217 0.97129 0.99885 0.92643 0.87695 1.23130 0.99850 1.00038 0.93493 1.23503 0.96420 0.92350 0.86839 0.88841 1.86485 1.82249 1.38452 1.32025 1.23756 0.97509 1.02447 0.96616 1.67509 1.18643 1.08981 1.22054 1.23068 0.93671 1.00929 0.88329 0.76234 0.84514 1.22748 1.20032 0.82024 0.83352 0.74267 0.92017 0.91467 0.89742 0.90715 0.90118 0.89929 0.75732 0.90011 0.90756 0.79779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.94 12.84 -148.98 -1.91 -0.98 16 2 C -0.08 0.41 2.82 71.23 0.20 0.61 16 3 Si 0.77 -4.77 29.91 68.60 2.05 -2.71 16 4 C -0.14 0.46 5.36 -19.70 -0.11 0.36 16 5 C -0.05 0.09 9.83 22.45 0.22 0.31 16 6 C -0.12 -0.28 9.63 22.61 0.22 -0.06 16 7 C 0.06 0.28 6.75 41.90 0.28 0.57 16 8 C 0.57 4.22 7.81 86.88 0.68 4.89 16 9 O -0.57 -7.96 16.32 -3.75 -0.06 -8.02 16 10 N -0.70 -1.43 5.55 -465.65 -2.58 -4.02 16 11 C 0.12 0.02 5.66 86.38 0.49 0.51 16 12 C -0.11 0.43 5.16 30.59 0.16 0.59 16 13 C -0.10 0.36 3.65 -10.27 -0.04 0.32 16 14 H 0.10 -0.51 8.13 -2.39 -0.02 -0.53 16 15 C -0.13 0.22 7.47 31.12 0.23 0.45 16 16 C 0.07 -0.08 5.21 31.12 0.16 0.08 16 17 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 18 O -0.58 -1.15 13.67 -148.98 -2.04 -3.19 16 19 C -0.17 0.35 7.46 31.12 0.23 0.58 16 20 N -0.46 -0.78 9.54 -184.90 -1.76 -2.55 16 21 C 0.10 -0.25 9.84 84.83 0.83 0.58 16 22 H 0.39 -2.73 8.70 -74.06 -0.64 -3.38 16 23 H 0.14 -1.02 7.96 -2.38 -0.02 -1.04 16 24 H -0.30 -0.63 7.11 99.48 0.71 0.07 16 25 H -0.27 0.81 7.01 99.48 0.70 1.51 16 26 H 0.16 -0.79 8.06 -2.91 -0.02 -0.81 16 27 H 0.15 0.39 7.64 -2.91 -0.02 0.37 16 28 H 0.42 -0.55 7.80 -92.71 -0.72 -1.27 16 29 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H 0.07 -0.27 7.84 -2.39 -0.02 -0.29 16 33 H 0.08 -0.24 8.14 -2.39 -0.02 -0.25 16 34 H 0.08 0.02 8.10 -2.39 -0.02 0.00 16 35 H 0.39 -2.32 9.12 -74.06 -0.68 -2.99 16 36 H 0.08 -0.02 7.90 -2.39 -0.02 -0.04 16 37 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.19 -1.39 4.86 -2.91 -0.01 -1.41 16 Total: 0.00 -18.97 323.58 -3.65 -22.62 By element: Atomic # 1 Polarization: -10.04 SS G_CDS: -0.91 Total: -10.95 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 3.57 Total: 9.80 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -4.35 Total: -6.56 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -4.01 Total: -12.19 kcal Atomic # 14 Polarization: -4.77 SS G_CDS: 2.05 Total: -2.71 kcal Total: -18.97 -3.65 -22.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_13287726.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.621 kcal (2) G-P(sol) polarization free energy of solvation -18.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds