Wall clock time and date at job start Tue Mar 9 2021 13:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47096 * 2 1 4 4 C 1.50693 * 109.47588 * 120.00611 * 2 1 3 5 5 C 1.38509 * 119.80625 * 245.25641 * 4 2 1 6 6 C 1.37827 * 120.29949 * 180.25956 * 5 4 2 7 7 C 1.39673 * 119.90865 * 359.45626 * 6 5 4 8 8 C 1.47538 * 120.19114 * 180.30224 * 7 6 5 9 9 O 1.21586 * 119.99993 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00302 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00443 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47327 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.46925 * 180.02562 * 12 11 10 14 14 H 1.08996 * 112.85131 * 316.19371 * 13 12 11 15 15 C 1.53785 * 113.61470 * 87.50481 * 13 12 11 16 16 C 1.53785 * 87.08120 * 139.97964 * 15 13 12 17 17 H 1.08996 * 113.61538 * 89.11617 * 16 15 13 18 18 O 1.42895 * 113.68822 * 220.00716 * 16 15 13 19 19 C 1.53787 * 113.61115 * 185.00029 * 13 12 11 20 20 C 1.40173 * 119.61618 * 0.28669 * 7 6 5 21 21 O 1.35656 * 120.14798 * 180.02562 * 20 7 6 22 22 C 1.38097 * 119.80362 * 64.99413 * 4 2 1 23 23 H 0.96701 * 113.99782 * 299.99084 * 1 2 3 24 24 H 1.09007 * 109.47051 * 240.01114 * 2 1 3 25 25 H 1.48499 * 110.00461 * 300.00566 * 3 2 1 26 26 H 1.48503 * 109.99316 * 61.32422 * 3 2 1 27 27 H 1.08000 * 119.84787 * 0.02562 * 5 4 2 28 28 H 1.08002 * 120.04850 * 179.74235 * 6 5 4 29 29 H 0.96999 * 119.99617 * 0.02562 * 10 8 7 30 30 H 1.09002 * 109.46802 * 300.00682 * 11 10 8 31 31 H 1.09006 * 109.46696 * 60.00027 * 11 10 8 32 32 H 1.09000 * 109.46925 * 300.00002 * 12 11 10 33 33 H 1.08996 * 109.47164 * 59.99790 * 12 11 10 34 34 H 1.08997 * 113.60972 * 254.52629 * 15 13 12 35 35 H 1.08995 * 113.61507 * 25.42966 * 15 13 12 36 36 H 0.96701 * 114.00372 * 277.53514 * 18 16 15 37 37 H 1.09004 * 113.61644 * 334.56234 * 19 13 12 38 38 H 1.08991 * 113.61510 * 105.46999 * 19 13 12 39 39 H 0.96701 * 113.99732 * 90.00449 * 21 20 7 40 40 H 1.07997 * 119.96285 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 2.6352 -0.0060 2.1930 6 6 3.1041 -0.6468 3.3196 7 6 2.8592 -2.0102 3.4980 8 6 3.3524 -2.7009 4.7048 9 8 3.1377 -3.8881 4.8563 10 7 4.0410 -2.0161 5.6393 11 6 4.5302 -2.7018 6.8379 12 6 5.2728 -1.7041 7.7290 13 6 5.7842 -2.4204 8.9804 14 1 5.0438 -3.0907 9.4168 15 6 7.1694 -3.0634 8.7994 16 6 7.4929 -2.5801 10.2230 17 1 7.2207 -3.2952 10.9993 18 8 8.8233 -2.0801 10.3711 19 6 6.4419 -1.4792 10.0035 20 6 2.1420 -2.7185 2.5240 21 8 1.8976 -4.0429 2.6865 22 6 1.6827 -2.0590 1.3938 23 1 -0.3933 0.4416 0.7651 24 1 1.7924 -0.5137 -0.8901 25 1 1.5614 2.4680 -1.2084 26 1 1.5879 2.4584 1.2244 27 1 2.8208 1.0494 2.0584 28 1 3.6560 -0.0944 4.0657 29 1 4.2119 -1.0689 5.5186 30 1 3.6867 -3.1207 7.3866 31 1 5.2084 -3.5038 6.5463 32 1 6.1162 -1.2848 7.1804 33 1 4.5943 -0.9023 8.0205 34 1 7.1377 -4.1487 8.7034 35 1 7.7747 -2.5868 8.0284 36 1 9.4889 -2.7678 10.5094 37 1 6.8483 -0.5694 9.5616 38 1 5.8230 -1.2855 10.8795 39 1 1.0718 -4.2364 3.1509 40 1 1.1299 -2.6007 0.6407 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_13422076.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:16:27 Heat of formation + Delta-G solvation = -112.316288 kcal Electronic energy + Delta-G solvation = -22904.141991 eV Core-core repulsion = 19265.252396 eV Total energy + Delta-G solvation = -3638.889595 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65618 -40.46444 -39.87488 -38.52293 -37.24073 -36.75685 -35.59516 -33.16735 -31.24740 -31.11261 -27.64881 -26.68526 -25.55509 -23.92324 -23.33000 -22.57796 -21.60364 -20.42724 -19.52093 -18.77339 -18.33407 -18.26921 -17.40169 -16.82142 -16.53291 -16.45515 -16.24460 -16.05123 -15.79640 -15.37758 -15.31493 -15.13112 -14.83224 -14.36721 -14.13460 -13.74966 -13.38390 -13.30997 -13.21873 -12.96484 -12.67803 -12.45242 -12.37211 -12.15688 -11.95556 -11.65381 -11.59276 -11.16277 -10.98614 -10.67474 -10.61302 -10.29040 -10.01660 -9.79049 -4.89131 -0.42406 0.14186 1.28280 1.61350 1.69958 1.99169 2.05577 2.56548 3.10200 3.31892 3.40852 3.47582 3.53301 3.64766 3.69104 3.76785 3.81722 4.01431 4.06616 4.13022 4.26613 4.28329 4.40178 4.41939 4.62075 4.64215 4.70272 4.76072 4.83081 4.86066 4.96636 5.02345 5.02450 5.11889 5.16801 5.23674 5.28180 5.37194 5.51022 5.59282 6.45870 6.46528 6.69475 6.88068 7.14923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.094 4.094 3 Si 0.779 3.221 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.053 4.053 7 C -0.180 4.180 8 C 0.552 3.448 9 O -0.567 6.567 10 N -0.714 5.714 11 C 0.123 3.877 12 C -0.108 4.108 13 C -0.101 4.101 14 H 0.101 0.899 15 C -0.166 4.166 16 C 0.066 3.934 17 H 0.091 0.909 18 O -0.583 6.583 19 C -0.126 4.126 20 C 0.151 3.849 21 O -0.498 6.498 22 C -0.139 4.139 23 H 0.388 0.612 24 H 0.125 0.875 25 H -0.307 1.307 26 H -0.268 1.268 27 H 0.163 0.837 28 H 0.169 0.831 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.393 0.607 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.406 0.594 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 5.313 2.387 6.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.202 4.202 3 Si 0.683 3.317 4 C -0.070 4.070 5 C -0.150 4.150 6 C -0.071 4.071 7 C -0.183 4.183 8 C 0.340 3.660 9 O -0.447 6.447 10 N -0.367 5.367 11 C -0.001 4.001 12 C -0.146 4.146 13 C -0.120 4.120 14 H 0.119 0.881 15 C -0.203 4.203 16 C 0.008 3.992 17 H 0.109 0.891 18 O -0.391 6.391 19 C -0.164 4.164 20 C 0.105 3.895 21 O -0.311 6.311 22 C -0.158 4.158 23 H 0.238 0.762 24 H 0.142 0.858 25 H -0.236 1.236 26 H -0.194 1.194 27 H 0.180 0.820 28 H 0.186 0.814 29 H 0.253 0.747 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.243 0.757 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.266 0.734 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.050 5.459 1.627 6.054 hybrid contribution -1.310 -0.846 0.624 1.680 sum 0.741 4.612 2.251 5.186 Atomic orbital electron populations 1.86608 1.18222 1.80516 1.50248 1.25463 0.83719 1.12767 0.98226 0.93893 0.90015 0.70914 0.76881 1.20486 0.96515 0.93472 0.96576 1.21282 0.98798 1.01315 0.93576 1.21498 0.96392 0.91289 0.97959 1.20460 1.06333 0.95645 0.95888 1.18361 0.78182 0.86254 0.83184 1.90808 1.58510 1.16636 1.78719 1.45822 1.55930 1.14023 1.20938 1.21359 0.98002 0.95765 0.84942 1.21673 1.00569 0.97670 0.94697 1.22214 0.96111 0.98080 0.95605 0.88098 1.23756 0.97144 1.01190 0.98239 1.23505 0.82500 0.97060 0.96179 0.89122 1.86480 1.17998 1.39271 1.95392 1.23129 0.95975 0.97720 0.99530 1.18772 0.94868 0.83266 0.92637 1.84716 1.47050 1.19184 1.80190 1.21349 1.01573 0.94701 0.98161 0.76225 0.85765 1.23580 1.19374 0.82019 0.81406 0.74695 0.92149 0.92711 0.90257 0.89443 0.91076 0.89757 0.75745 0.89635 0.90243 0.73387 0.84769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.19 12.83 -148.98 -1.91 -2.10 16 2 C -0.09 0.29 2.79 71.23 0.20 0.49 16 3 Si 0.78 -4.51 29.87 68.60 2.05 -2.46 16 4 C -0.07 0.16 5.35 -19.84 -0.11 0.06 16 5 C -0.13 0.79 8.64 22.24 0.19 0.98 16 6 C -0.05 0.28 9.54 22.52 0.21 0.49 16 7 C -0.18 -0.43 5.89 -20.01 -0.12 -0.55 16 8 C 0.55 3.26 7.76 86.70 0.67 3.93 16 9 O -0.57 -8.41 15.16 16.93 0.26 -8.16 16 10 N -0.71 1.19 5.51 -466.27 -2.57 -1.37 16 11 C 0.12 -0.17 5.66 86.38 0.49 0.32 16 12 C -0.11 0.68 5.17 30.59 0.16 0.84 16 13 C -0.10 0.47 3.65 -10.26 -0.04 0.44 16 14 H 0.10 -0.53 8.13 -2.39 -0.02 -0.55 16 15 C -0.17 0.47 7.47 31.12 0.23 0.70 16 16 C 0.07 -0.12 5.21 31.12 0.16 0.04 16 17 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 18 O -0.58 -0.71 13.67 -148.98 -2.04 -2.75 16 19 C -0.13 0.36 7.47 31.12 0.23 0.60 16 20 C 0.15 0.78 6.72 22.84 0.15 0.93 16 21 O -0.50 -4.15 11.58 -68.80 -0.80 -4.95 16 22 C -0.14 -0.28 9.60 22.34 0.21 -0.07 16 23 H 0.39 -2.30 8.70 -74.06 -0.64 -2.94 16 24 H 0.12 -0.47 7.96 -2.38 -0.02 -0.49 16 25 H -0.31 -0.96 7.11 99.48 0.71 -0.26 16 26 H -0.27 1.07 6.99 99.48 0.70 1.77 16 27 H 0.16 -1.82 4.80 -2.91 -0.01 -1.83 16 28 H 0.17 -2.15 6.40 -2.91 -0.02 -2.17 16 29 H 0.41 -3.63 6.50 -92.71 -0.60 -4.23 16 30 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.05 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.08 -0.54 7.84 -2.39 -0.02 -0.56 16 33 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.08 -0.12 7.89 -2.39 -0.02 -0.14 16 36 H 0.39 -2.53 9.12 -74.06 -0.68 -3.20 16 37 H 0.09 -0.13 8.10 -2.38 -0.02 -0.15 16 38 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.41 0.59 9.06 -74.06 -0.67 -0.08 16 40 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 Total: 0.00 -24.90 335.07 -3.80 -28.70 By element: Atomic # 1 Polarization: -14.66 SS G_CDS: -1.46 Total: -16.12 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 2.66 Total: 9.21 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -2.57 Total: -1.37 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -4.49 Total: -17.96 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: 2.05 Total: -2.46 kcal Total: -24.90 -3.80 -28.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_13422076.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.612 kcal (2) G-P(sol) polarization free energy of solvation -24.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds