Wall clock time and date at job start Tue Mar 9 2021 13:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47213 * 2 1 4 4 C 1.50694 * 109.47104 * 120.00272 * 2 1 3 5 5 C 1.34852 * 125.89126 * 244.97075 * 4 2 1 6 6 C 1.40895 * 107.41764 * 180.02562 * 5 4 2 7 7 C 1.34844 * 107.41474 * 0.02562 * 6 5 4 8 8 C 1.50707 * 125.88571 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47132 * 85.02813 * 8 7 6 10 10 O 1.21278 * 120.00215 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00184 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47351 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47304 * 179.97438 * 13 12 11 15 15 H 1.08999 * 112.84933 * 316.19697 * 14 13 12 16 16 C 1.53781 * 113.69221 * 87.46267 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.98770 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 O 1.42891 * 113.69771 * 220.05337 * 17 16 14 20 20 C 1.53781 * 113.61503 * 184.99857 * 14 13 12 21 21 N 1.36344 * 108.22607 * 0.26489 * 7 6 5 22 22 H 0.96697 * 113.99831 * 299.99835 * 1 2 3 23 23 H 1.09006 * 109.46658 * 240.00303 * 2 1 3 24 24 H 1.48504 * 109.99795 * 300.00219 * 3 2 1 25 25 H 1.48499 * 110.00086 * 61.31936 * 3 2 1 26 26 H 1.08004 * 126.29020 * 0.04512 * 5 4 2 27 27 H 1.07995 * 126.28599 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.46977 * 325.02063 * 8 7 6 29 29 H 1.09001 * 109.46802 * 205.02596 * 8 7 6 30 30 H 0.96994 * 119.99586 * 359.97438 * 11 9 8 31 31 H 1.09000 * 109.47417 * 59.98926 * 12 11 9 32 32 H 1.09004 * 109.46483 * 299.99284 * 12 11 9 33 33 H 1.09000 * 109.47431 * 59.99309 * 13 12 11 34 34 H 1.09001 * 109.46726 * 299.99721 * 13 12 11 35 35 H 1.09005 * 113.61471 * 254.54353 * 16 14 13 36 36 H 1.09003 * 113.61469 * 25.44131 * 16 14 13 37 37 H 0.96702 * 114.00033 * 277.42089 * 19 17 16 38 38 H 1.09002 * 113.61445 * 334.48413 * 20 14 13 39 39 H 1.09002 * 113.61408 * 105.30144 * 20 14 13 40 40 H 0.96997 * 125.64109 * 179.73811 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6306 -0.1489 2.2374 6 6 2.8985 -1.1608 3.1805 7 6 2.3532 -2.3022 2.7135 8 6 2.3936 -3.6448 3.3970 9 6 1.2613 -3.7388 4.3869 10 8 0.4970 -2.8073 4.5243 11 7 1.0986 -4.8578 5.1203 12 6 -0.0025 -4.9495 6.0823 13 6 0.0386 -6.3124 6.7763 14 6 -1.1109 -6.4079 7.7813 15 1 -1.2315 -5.5010 8.3738 16 6 -2.4245 -6.9238 7.1705 17 6 -2.6178 -7.7329 8.4671 18 1 -3.1496 -7.1876 9.2468 19 8 -3.1390 -9.0459 8.2524 20 6 -1.0883 -7.6950 8.6227 21 7 1.7635 -2.0335 1.5139 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8901 24 1 1.5614 2.4679 -1.2085 25 1 1.5879 2.4586 1.2242 26 1 2.9300 0.8864 2.3082 27 1 3.4408 -1.0437 4.1070 28 1 3.3436 -3.7580 3.9195 29 1 2.2920 -4.4346 2.6526 30 1 1.7101 -5.6027 5.0107 31 1 -0.9522 -4.8369 5.5593 32 1 0.0985 -4.1594 6.8264 33 1 0.9883 -6.4255 7.2991 34 1 -0.0625 -7.1023 6.0319 35 1 -3.1739 -6.1456 7.0255 36 1 -2.2807 -7.5444 6.2860 37 1 -4.1005 -9.0762 8.1539 38 1 -0.5791 -8.5264 8.1352 39 1 -0.7575 -7.5396 9.6496 40 1 1.2988 -2.6766 0.9559 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17837616_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:04 Heat of formation + Delta-G solvation = -55.674562 kcal Electronic energy + Delta-G solvation = -21240.103633 eV Core-core repulsion = 17829.615009 eV Total energy + Delta-G solvation = -3410.488623 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -42.27021 -40.73775 -40.19076 -37.75465 -36.82093 -35.57453 -33.30012 -31.85466 -31.54289 -29.29104 -26.82115 -25.96508 -24.75440 -22.72077 -21.89318 -21.27520 -20.94678 -20.54059 -18.96647 -18.53702 -17.99906 -17.34375 -16.87375 -16.61525 -16.35753 -16.15635 -15.71409 -15.45605 -15.10218 -14.92661 -14.53453 -14.34951 -14.10350 -13.96007 -13.72463 -13.52247 -13.48740 -13.38088 -12.90728 -12.69816 -12.52118 -12.10353 -12.07680 -11.78157 -11.71741 -11.30845 -10.91812 -10.73959 -10.72380 -10.11037 -9.70060 -8.89358 -4.86462 1.15342 1.32994 1.65319 1.72373 1.91132 2.01384 2.30860 2.52595 3.16598 3.38148 3.41649 3.49430 3.64420 3.67051 3.85623 3.86543 3.88742 4.00037 4.05228 4.19796 4.25754 4.36299 4.46096 4.46420 4.58998 4.61312 4.71197 4.72872 4.83501 4.84974 4.90663 5.00680 5.13505 5.33684 5.34565 5.37553 5.38140 6.06694 6.21499 6.42654 6.43308 6.65112 6.67909 7.22610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.056 4.056 3 Si 0.715 3.285 4 C -0.009 4.009 5 C -0.187 4.187 6 C -0.173 4.173 7 C 0.037 3.963 8 C -0.072 4.072 9 C 0.510 3.490 10 O -0.524 6.524 11 N -0.734 5.734 12 C 0.120 3.880 13 C -0.119 4.119 14 C -0.107 4.107 15 H 0.097 0.903 16 C -0.167 4.167 17 C 0.073 3.927 18 H 0.082 0.918 19 O -0.561 6.561 20 C -0.124 4.124 21 N -0.536 5.536 22 H 0.380 0.620 23 H 0.114 0.886 24 H -0.258 1.258 25 H -0.257 1.257 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.401 0.599 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.379 0.621 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -3.184 0.844 4.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.165 4.165 3 Si 0.615 3.385 4 C -0.122 4.122 5 C -0.212 4.212 6 C -0.198 4.198 7 C -0.077 4.077 8 C -0.113 4.113 9 C 0.295 3.705 10 O -0.399 6.399 11 N -0.388 5.388 12 C -0.003 4.003 13 C -0.156 4.156 14 C -0.126 4.126 15 H 0.115 0.885 16 C -0.204 4.204 17 C 0.014 3.986 18 H 0.100 0.900 19 O -0.367 6.367 20 C -0.162 4.162 21 N -0.130 5.130 22 H 0.228 0.772 23 H 0.131 0.869 24 H -0.184 1.184 25 H -0.182 1.182 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.235 0.765 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.227 0.773 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.006 -2.223 0.347 3.754 hybrid contribution -1.645 -0.833 0.304 1.869 sum 1.361 -3.055 0.651 3.407 Atomic orbital electron populations 1.86563 1.17927 1.80260 1.49603 1.24773 0.83808 1.11479 0.96438 0.94406 0.91412 0.72539 0.80155 1.20779 1.07079 0.84345 0.99982 1.20675 1.05397 0.99647 0.95441 1.20588 1.06654 0.91677 1.00883 1.19484 1.03649 0.95876 0.88665 1.20137 0.99232 0.94411 0.97496 1.20613 0.86159 0.82226 0.81508 1.90770 1.45176 1.37236 1.66697 1.46020 1.32716 1.18193 1.41822 1.21361 0.89925 0.97565 0.91493 1.21739 0.99211 0.96506 0.98178 1.22238 0.94849 0.98211 0.97295 0.88505 1.23835 0.97698 1.00024 0.98874 1.23392 0.95217 0.83594 0.96372 0.89997 1.86526 1.26828 1.28303 1.94994 1.23118 0.94595 0.97669 1.00796 1.41805 1.44315 1.09075 1.17853 0.77220 0.86854 1.18354 1.18152 0.84130 0.84578 0.86412 0.88226 0.76488 0.91489 0.91348 0.90760 0.90938 0.91147 0.89174 0.77336 0.89041 0.90660 0.75139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.31 12.88 -35.23 -0.45 -1.76 16 2 C -0.06 -0.04 3.08 36.00 0.11 0.07 16 3 Si 0.72 -0.16 30.60 -169.99 -5.20 -5.37 16 4 C -0.01 -0.02 6.50 -81.79 -0.53 -0.55 16 5 C -0.19 -0.42 9.37 -39.78 -0.37 -0.79 16 6 C -0.17 -0.43 10.76 -39.78 -0.43 -0.86 16 7 C 0.04 0.06 5.66 -81.79 -0.46 -0.41 16 8 C -0.07 0.11 6.24 -29.03 -0.18 -0.07 16 9 C 0.51 0.61 7.82 -10.99 -0.09 0.52 16 10 O -0.52 -3.23 16.03 5.56 0.09 -3.14 16 11 N -0.73 1.09 5.56 -60.30 -0.33 0.75 16 12 C 0.12 -0.10 5.66 -4.04 -0.02 -0.12 16 13 C -0.12 0.31 5.17 -26.73 -0.14 0.17 16 14 C -0.11 0.21 3.65 -89.81 -0.33 -0.12 16 15 H 0.10 -0.21 8.13 -51.93 -0.42 -0.63 16 16 C -0.17 0.22 7.48 -25.78 -0.19 0.02 16 17 C 0.07 -0.05 5.23 -25.77 -0.13 -0.19 16 18 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 19 O -0.56 -0.40 13.67 -35.23 -0.48 -0.88 16 20 C -0.12 0.13 7.46 -25.92 -0.19 -0.06 16 21 N -0.54 -0.76 6.08 -5.44 -0.03 -0.79 16 22 H 0.38 0.15 8.70 45.56 0.40 0.54 16 23 H 0.11 -0.05 7.96 -51.93 -0.41 -0.46 16 24 H -0.26 -0.69 7.11 56.52 0.40 -0.29 16 25 H -0.26 -0.55 7.11 56.52 0.40 -0.15 16 26 H 0.14 0.09 6.24 -52.48 -0.33 -0.24 16 27 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 28 H 0.12 -0.45 8.14 -51.93 -0.42 -0.87 16 29 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 30 H 0.40 -1.79 8.47 -40.82 -0.35 -2.14 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 34 H 0.07 -0.20 7.85 -51.93 -0.41 -0.60 16 35 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 36 H 0.09 -0.06 7.90 -51.93 -0.41 -0.47 16 37 H 0.38 -1.21 9.12 45.56 0.42 -0.80 16 38 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 39 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 40 H 0.41 -0.10 8.96 -40.82 -0.37 -0.47 16 LS Contribution 337.74 15.07 5.09 5.09 Total: 0.00 -10.03 337.74 -9.59 -19.62 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: -5.30 Total: -11.16 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.96 Total: -2.37 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.37 Total: -0.04 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.85 Total: -5.78 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: -5.20 Total: -5.37 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -10.03 -9.59 -19.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.050 kcal (2) G-P(sol) polarization free energy of solvation -10.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds