Wall clock time and date at job start Tue Mar 9 2021 13:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47213 * 2 1 4 4 C 1.50694 * 109.47104 * 120.00272 * 2 1 3 5 5 C 1.34852 * 125.89126 * 244.97075 * 4 2 1 6 6 C 1.40895 * 107.41764 * 180.02562 * 5 4 2 7 7 C 1.34844 * 107.41474 * 0.02562 * 6 5 4 8 8 C 1.50707 * 125.88571 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47132 * 85.02813 * 8 7 6 10 10 O 1.21278 * 120.00215 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00039 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00184 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47351 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47304 * 179.97438 * 13 12 11 15 15 H 1.08999 * 112.84933 * 316.19697 * 14 13 12 16 16 C 1.53781 * 113.69221 * 87.46267 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.98770 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 O 1.42891 * 113.69771 * 220.05337 * 17 16 14 20 20 C 1.53781 * 113.61503 * 184.99857 * 14 13 12 21 21 N 1.36344 * 108.22607 * 0.26489 * 7 6 5 22 22 H 0.96697 * 113.99831 * 299.99835 * 1 2 3 23 23 H 1.09006 * 109.46658 * 240.00303 * 2 1 3 24 24 H 1.48504 * 109.99795 * 300.00219 * 3 2 1 25 25 H 1.48499 * 110.00086 * 61.31936 * 3 2 1 26 26 H 1.08004 * 126.29020 * 0.04512 * 5 4 2 27 27 H 1.07995 * 126.28599 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.46977 * 325.02063 * 8 7 6 29 29 H 1.09001 * 109.46802 * 205.02596 * 8 7 6 30 30 H 0.96994 * 119.99586 * 359.97438 * 11 9 8 31 31 H 1.09000 * 109.47417 * 59.98926 * 12 11 9 32 32 H 1.09004 * 109.46483 * 299.99284 * 12 11 9 33 33 H 1.09000 * 109.47431 * 59.99309 * 13 12 11 34 34 H 1.09001 * 109.46726 * 299.99721 * 13 12 11 35 35 H 1.09005 * 113.61471 * 254.54353 * 16 14 13 36 36 H 1.09003 * 113.61469 * 25.44131 * 16 14 13 37 37 H 0.96702 * 114.00033 * 277.42089 * 19 17 16 38 38 H 1.09002 * 113.61445 * 334.48413 * 20 14 13 39 39 H 1.09002 * 113.61408 * 105.30144 * 20 14 13 40 40 H 0.96997 * 125.64109 * 179.73811 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6306 -0.1489 2.2374 6 6 2.8985 -1.1608 3.1805 7 6 2.3532 -2.3022 2.7135 8 6 2.3936 -3.6448 3.3970 9 6 1.2613 -3.7388 4.3869 10 8 0.4970 -2.8073 4.5243 11 7 1.0986 -4.8578 5.1203 12 6 -0.0025 -4.9495 6.0823 13 6 0.0386 -6.3124 6.7763 14 6 -1.1109 -6.4079 7.7813 15 1 -1.2315 -5.5010 8.3738 16 6 -2.4245 -6.9238 7.1705 17 6 -2.6178 -7.7329 8.4671 18 1 -3.1496 -7.1876 9.2468 19 8 -3.1390 -9.0459 8.2524 20 6 -1.0883 -7.6950 8.6227 21 7 1.7635 -2.0335 1.5139 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8901 24 1 1.5614 2.4679 -1.2085 25 1 1.5879 2.4586 1.2242 26 1 2.9300 0.8864 2.3082 27 1 3.4408 -1.0437 4.1070 28 1 3.3436 -3.7580 3.9195 29 1 2.2920 -4.4346 2.6526 30 1 1.7101 -5.6027 5.0107 31 1 -0.9522 -4.8369 5.5593 32 1 0.0985 -4.1594 6.8264 33 1 0.9883 -6.4255 7.2991 34 1 -0.0625 -7.1023 6.0319 35 1 -3.1739 -6.1456 7.0255 36 1 -2.2807 -7.5444 6.2860 37 1 -4.1005 -9.0762 8.1539 38 1 -0.5791 -8.5264 8.1352 39 1 -0.7575 -7.5396 9.6496 40 1 1.2988 -2.6766 0.9559 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_14644196.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:17:56 Heat of formation + Delta-G solvation = -60.745540 kcal Electronic energy + Delta-G solvation = -21240.323527 eV Core-core repulsion = 17829.615009 eV Total energy + Delta-G solvation = -3410.708517 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 6.39 seconds Orbital eigenvalues (eV) -42.33645 -40.72872 -40.18873 -37.87790 -36.81229 -35.59238 -33.31045 -31.94438 -31.50122 -29.30108 -26.72273 -25.95255 -24.76581 -22.62284 -21.94452 -21.36659 -20.99918 -20.44301 -19.05932 -18.49911 -17.98892 -17.39333 -16.84177 -16.64028 -16.39120 -16.15750 -15.68823 -15.40502 -15.15804 -14.98253 -14.62007 -14.29192 -14.17450 -14.04676 -13.85171 -13.48722 -13.41351 -13.31545 -12.84544 -12.65310 -12.45938 -12.19700 -11.97831 -11.85688 -11.68037 -11.20259 -11.01925 -10.82804 -10.67467 -10.13603 -9.80740 -8.98010 -4.88237 1.08311 1.29307 1.60695 1.67300 1.84329 1.94128 2.31325 2.51059 3.30196 3.37030 3.50133 3.61655 3.68092 3.78201 3.80739 3.97485 4.00236 4.12854 4.20763 4.28525 4.38435 4.41634 4.49710 4.60217 4.62086 4.69127 4.79375 4.79931 4.82939 4.94069 5.01272 5.12469 5.24601 5.25444 5.28295 5.42327 5.47746 5.97946 6.12344 6.37436 6.51504 6.66775 6.84954 7.24634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.063 4.063 3 Si 0.800 3.200 4 C -0.018 4.018 5 C -0.202 4.202 6 C -0.201 4.201 7 C 0.034 3.966 8 C -0.066 4.066 9 C 0.507 3.493 10 O -0.582 6.582 11 N -0.719 5.719 12 C 0.123 3.877 13 C -0.107 4.107 14 C -0.102 4.102 15 H 0.100 0.900 16 C -0.165 4.165 17 C 0.066 3.934 18 H 0.092 0.908 19 O -0.583 6.583 20 C -0.126 4.126 21 N -0.537 5.537 22 H 0.385 0.615 23 H 0.127 0.873 24 H -0.296 1.296 25 H -0.291 1.291 26 H 0.149 0.851 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.129 0.871 30 H 0.419 0.581 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.393 0.607 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -4.283 0.809 5.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.172 4.172 3 Si 0.704 3.296 4 C -0.131 4.131 5 C -0.227 4.227 6 C -0.225 4.225 7 C -0.080 4.080 8 C -0.106 4.106 9 C 0.294 3.706 10 O -0.461 6.461 11 N -0.372 5.372 12 C -0.001 4.001 13 C -0.145 4.145 14 C -0.121 4.121 15 H 0.118 0.882 16 C -0.203 4.203 17 C 0.008 3.992 18 H 0.109 0.891 19 O -0.391 6.391 20 C -0.164 4.164 21 N -0.133 5.133 22 H 0.235 0.765 23 H 0.145 0.855 24 H -0.224 1.224 25 H -0.218 1.218 26 H 0.167 0.833 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.147 0.853 30 H 0.256 0.744 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.243 0.757 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.970 -3.390 0.313 5.230 hybrid contribution -1.988 -0.507 0.346 2.081 sum 1.982 -3.897 0.660 4.421 Atomic orbital electron populations 1.86535 1.18949 1.80607 1.50149 1.25019 0.83060 1.12399 0.96693 0.93398 0.90012 0.70096 0.76061 1.20908 1.07210 0.84719 1.00264 1.20918 1.05812 1.00248 0.95728 1.20854 1.07796 0.92421 1.01449 1.19932 1.02597 0.97002 0.88513 1.20258 0.99218 0.93680 0.97489 1.21102 0.86047 0.81823 0.81608 1.90750 1.47423 1.39319 1.68605 1.45918 1.32494 1.18099 1.40737 1.21278 0.89430 0.98230 0.91184 1.21653 0.99522 0.95322 0.98009 1.22218 0.94711 0.97965 0.97218 0.88227 1.23796 0.98175 0.99855 0.98476 1.23550 0.95549 0.83274 0.96871 0.89062 1.86480 1.28351 1.29186 1.95089 1.23126 0.94398 0.97736 1.01118 1.41903 1.44161 1.09131 1.18058 0.76543 0.85529 1.22439 1.21752 0.83318 0.84126 0.83646 0.85290 0.74416 0.93171 0.92637 0.89518 0.90406 0.91152 0.89816 0.75732 0.89681 0.90222 0.74371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.04 12.88 -148.98 -1.92 -4.96 16 2 C -0.06 -0.11 3.08 71.23 0.22 0.11 16 3 Si 0.80 0.05 30.60 68.60 2.10 2.15 16 4 C -0.02 -0.07 6.50 41.08 0.27 0.20 16 5 C -0.20 -1.03 9.37 22.14 0.21 -0.82 16 6 C -0.20 -1.10 10.76 22.14 0.24 -0.86 16 7 C 0.03 0.10 5.66 41.08 0.23 0.33 16 8 C -0.07 0.30 6.24 29.10 0.18 0.48 16 9 C 0.51 1.08 7.82 87.65 0.69 1.77 16 10 O -0.58 -7.84 16.03 -3.02 -0.05 -7.88 16 11 N -0.72 2.69 5.56 -463.07 -2.57 0.11 16 12 C 0.12 -0.19 5.66 86.38 0.49 0.30 16 13 C -0.11 0.64 5.17 30.59 0.16 0.80 16 14 C -0.10 0.42 3.65 -10.27 -0.04 0.38 16 15 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 16 C -0.17 0.39 7.48 31.21 0.23 0.63 16 17 C 0.07 -0.09 5.23 31.21 0.16 0.07 16 18 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 19 O -0.58 -0.93 13.67 -148.98 -2.04 -2.96 16 20 C -0.13 0.30 7.46 31.12 0.23 0.53 16 21 N -0.54 -1.51 6.08 -171.11 -1.04 -2.55 16 22 H 0.39 0.72 8.70 -74.06 -0.64 0.07 16 23 H 0.13 -0.16 7.96 -2.38 -0.02 -0.18 16 24 H -0.30 -1.89 7.11 99.48 0.71 -1.19 16 25 H -0.29 -1.60 7.11 99.48 0.71 -0.90 16 26 H 0.15 0.31 6.24 -2.91 -0.02 0.29 16 27 H 0.14 0.47 8.06 -2.91 -0.02 0.44 16 28 H 0.15 -1.45 8.14 -2.39 -0.02 -1.47 16 29 H 0.13 -1.33 8.14 -2.39 -0.02 -1.35 16 30 H 0.42 -4.52 8.47 -92.71 -0.79 -5.30 16 31 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.06 0.08 8.14 -2.38 -0.02 0.06 16 33 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.08 -0.50 7.85 -2.39 -0.02 -0.52 16 35 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 36 H 0.08 -0.09 7.90 -2.39 -0.02 -0.11 16 37 H 0.39 -2.41 9.12 -74.06 -0.68 -3.09 16 38 H 0.08 -0.08 8.10 -2.39 -0.02 -0.10 16 39 H 0.08 -0.27 8.14 -2.39 -0.02 -0.28 16 40 H 0.42 -0.30 8.96 -92.71 -0.83 -1.13 16 Total: 0.00 -24.49 337.74 -4.06 -28.56 By element: Atomic # 1 Polarization: -14.57 SS G_CDS: -1.81 Total: -16.38 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.27 Total: 3.92 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -3.61 Total: -2.43 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -4.00 Total: -15.81 kcal Atomic # 14 Polarization: 0.05 SS G_CDS: 2.10 Total: 2.15 kcal Total: -24.49 -4.06 -28.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_14644196.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.189 kcal (2) G-P(sol) polarization free energy of solvation -24.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.39 seconds