Wall clock time and date at job start Tue Mar 9 2021 13:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.46768 * 2 1 4 4 C 1.50699 * 109.47158 * 240.00413 * 2 1 3 5 5 C 1.38271 * 119.94563 * 119.72381 * 4 2 1 6 6 C 1.38146 * 120.05540 * 179.72476 * 5 4 2 7 7 C 1.38728 * 119.94387 * 0.57065 * 6 5 4 8 8 O 1.35895 * 120.05690 * 179.67938 * 7 6 5 9 9 C 1.42897 * 117.00208 * 0.02633 * 8 7 6 10 10 C 1.50699 * 109.47708 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99538 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00519 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00191 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46811 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46957 * 179.97438 * 14 13 12 16 16 H 1.09001 * 112.84692 * 45.33201 * 15 14 13 17 17 C 1.53774 * 113.61449 * 176.52838 * 15 14 13 18 18 C 1.53780 * 87.08314 * 139.98035 * 17 15 14 19 19 H 1.09001 * 113.61502 * 89.10925 * 18 17 15 20 20 O 1.42896 * 113.61503 * 219.93586 * 18 17 15 21 21 C 1.53781 * 113.61185 * 274.13535 * 15 14 13 22 22 C 1.38735 * 119.89072 * 359.70511 * 7 6 5 23 23 C 1.38147 * 119.94145 * 359.97438 * 22 7 6 24 24 H 0.96698 * 114.00355 * 60.00074 * 1 2 3 25 25 H 1.09000 * 109.47411 * 120.00061 * 2 1 3 26 26 H 1.48506 * 110.00048 * 60.00575 * 3 2 1 27 27 H 1.48502 * 109.99996 * 181.31901 * 3 2 1 28 28 H 1.08003 * 119.96765 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.02761 * 180.25084 * 6 5 4 30 30 H 1.09001 * 109.46870 * 299.99559 * 9 8 7 31 31 H 1.08995 * 109.47175 * 59.99163 * 9 8 7 32 32 H 0.97004 * 119.99891 * 359.97438 * 12 10 9 33 33 H 1.08996 * 109.46656 * 299.99090 * 13 12 10 34 34 H 1.08995 * 109.47599 * 59.99345 * 13 12 10 35 35 H 1.09001 * 109.47261 * 299.99512 * 14 13 12 36 36 H 1.08994 * 109.47775 * 59.99795 * 14 13 12 37 37 H 1.09005 * 113.61175 * 254.52610 * 17 15 14 38 38 H 1.08996 * 113.61784 * 25.34897 * 17 15 14 39 39 H 0.96704 * 113.99737 * 179.97438 * 20 18 17 40 40 H 1.09000 * 113.61697 * 334.56585 * 21 15 14 41 41 H 1.08999 * 113.61469 * 105.47038 * 21 15 14 42 42 H 1.07993 * 120.03312 * 179.97438 * 22 7 6 43 43 H 1.07997 * 119.97419 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0498 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7214 -0.0355 -2.1428 6 6 3.1879 -0.6861 -3.2687 7 6 2.8531 -2.0141 -3.4896 8 8 3.3053 -2.6544 -4.5997 9 6 4.1218 -1.8992 -5.4969 10 6 4.5253 -2.7674 -6.6607 11 8 4.1509 -3.9197 -6.7161 12 7 5.3030 -2.2638 -7.6394 13 6 5.6957 -3.1080 -8.7705 14 6 6.5699 -2.2993 -9.7311 15 6 6.9805 -3.1811 -10.9121 16 1 6.1499 -3.7584 -11.3182 17 6 7.7950 -2.4365 -11.9830 18 6 8.6613 -3.7024 -12.0921 19 1 8.2910 -4.4234 -12.8209 20 8 10.0563 -3.4304 -12.2399 21 6 8.2415 -4.0200 -10.6453 22 6 2.0554 -2.6873 -2.5757 23 6 1.5970 -2.0342 -1.4480 24 1 -0.3934 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8900 26 1 1.5614 2.4679 1.2086 27 1 3.5344 1.7704 -0.0321 28 1 2.9775 0.9999 -1.9728 29 1 3.8084 -0.1597 -3.9789 30 1 3.5603 -1.0396 -5.8630 31 1 5.0137 -1.5545 -4.9738 32 1 5.6028 -1.3423 -7.5950 33 1 6.2569 -3.9677 -8.4045 34 1 4.8038 -3.4524 -9.2938 35 1 6.0084 -1.4397 -10.0971 36 1 7.4618 -1.9546 -9.2081 37 1 7.2282 -2.2160 -12.8877 38 1 8.3326 -1.5698 -11.5985 39 1 10.6064 -4.2228 -12.3086 40 1 8.9026 -3.5878 -9.8940 41 1 8.0348 -5.0759 -10.4715 42 1 1.7931 -3.7210 -2.7457 43 1 0.9757 -2.5576 -0.7365 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_2989410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:40 Heat of formation + Delta-G solvation = -106.350756 kcal Electronic energy + Delta-G solvation = -23928.482773 eV Core-core repulsion = 20134.314243 eV Total energy + Delta-G solvation = -3794.168530 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.56223 -40.71594 -40.23423 -39.00790 -37.15163 -36.79638 -35.64782 -32.56090 -31.94472 -31.63533 -29.37973 -26.70994 -26.30464 -25.42842 -23.93226 -22.63556 -22.38543 -21.64855 -20.43537 -19.50097 -18.57582 -18.35445 -18.03236 -17.52393 -17.10947 -16.80713 -16.49505 -16.35246 -16.03102 -15.87185 -15.56767 -15.35097 -15.16377 -14.86677 -14.63370 -14.32694 -14.16618 -13.76841 -13.55517 -13.43592 -13.39159 -13.30447 -12.69619 -12.47260 -12.25181 -12.07117 -12.05671 -11.96804 -11.74340 -11.65696 -11.18844 -11.03632 -10.66052 -10.40443 -10.23298 -10.04849 -9.22966 -4.98353 0.27012 0.30326 1.34792 1.42192 1.48274 1.65126 1.99442 2.59244 2.65480 3.30892 3.50717 3.53478 3.57377 3.63635 3.74057 3.79986 3.82891 3.95447 4.00402 4.03178 4.07056 4.11987 4.26935 4.30560 4.39037 4.42511 4.50776 4.61805 4.66112 4.69613 4.81839 4.84940 4.95730 4.96806 5.01710 5.13051 5.15283 5.24972 5.27191 5.32399 5.49475 5.49981 5.69281 6.25415 6.45231 6.80118 6.86508 7.10321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.074 4.074 3 Si 0.783 3.217 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.199 4.199 7 C 0.120 3.880 8 O -0.321 6.321 9 C 0.037 3.963 10 C 0.510 3.490 11 O -0.577 6.577 12 N -0.710 5.710 13 C 0.122 3.878 14 C -0.108 4.108 15 C -0.102 4.102 16 H 0.101 0.899 17 C -0.126 4.126 18 C 0.065 3.935 19 H 0.091 0.909 20 O -0.583 6.583 21 C -0.166 4.166 22 C -0.167 4.167 23 C -0.061 4.061 24 H 0.395 0.605 25 H 0.102 0.898 26 H -0.304 1.304 27 H -0.281 1.281 28 H 0.154 0.846 29 H 0.166 0.834 30 H 0.130 0.870 31 H 0.125 0.875 32 H 0.422 0.578 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.393 0.607 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.125 0.875 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 6.315 -4.377 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.184 4.184 3 Si 0.689 3.311 4 C -0.162 4.162 5 C -0.093 4.093 6 C -0.218 4.218 7 C 0.075 3.925 8 O -0.234 6.234 9 C -0.041 4.041 10 C 0.296 3.704 11 O -0.455 6.455 12 N -0.364 5.364 13 C -0.002 4.002 14 C -0.145 4.145 15 C -0.121 4.121 16 H 0.119 0.881 17 C -0.164 4.164 18 C 0.007 3.993 19 H 0.109 0.891 20 O -0.391 6.391 21 C -0.204 4.204 22 C -0.185 4.185 23 C -0.079 4.079 24 H 0.245 0.755 25 H 0.120 0.880 26 H -0.232 1.232 27 H -0.208 1.208 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.260 0.740 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.242 0.758 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.257 6.175 -3.510 7.453 hybrid contribution 0.434 -1.240 0.270 1.341 sum 2.692 4.936 -3.240 6.489 Atomic orbital electron populations 1.86461 1.17506 1.82227 1.50502 1.25196 0.85144 1.11091 0.96932 0.93744 0.77726 0.74854 0.84742 1.20368 1.02094 0.95281 0.98439 1.21075 0.95420 1.00066 0.92743 1.21510 1.05720 0.93210 1.01333 1.19217 0.94678 0.92062 0.86547 1.86127 1.65147 1.40436 1.31713 1.22752 0.97726 0.94281 0.89319 1.20602 0.78294 0.87553 0.83978 1.90766 1.55757 1.20390 1.78625 1.45708 1.51437 1.17061 1.22230 1.21364 0.98601 0.93835 0.86369 1.21666 0.99856 0.98375 0.94622 1.22221 0.96691 0.97451 0.95713 0.88116 1.23121 0.96605 0.97114 0.99515 1.23549 0.81120 0.98561 0.96103 0.89139 1.86482 1.18500 1.37972 1.96195 1.23787 0.97774 1.00833 0.98007 1.20620 1.01558 1.01266 0.95106 1.20897 0.97188 0.94086 0.95725 0.75512 0.88020 1.23238 1.20777 0.82883 0.81676 0.85245 0.85708 0.74016 0.92685 0.92212 0.89281 0.90209 0.90210 0.89621 0.75757 0.89754 0.91075 0.85653 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.31 12.77 -148.98 -1.90 -2.21 16 2 C -0.07 0.04 2.82 71.24 0.20 0.24 16 3 Si 0.78 -2.72 29.78 68.60 2.04 -0.68 16 4 C -0.16 -0.02 5.39 -19.85 -0.11 -0.12 16 5 C -0.08 0.24 8.66 22.26 0.19 0.43 16 6 C -0.20 0.60 9.04 22.37 0.20 0.80 16 7 C 0.12 0.39 6.69 22.51 0.15 0.54 16 8 O -0.32 -1.87 9.67 -73.34 -0.71 -2.58 16 9 C 0.04 -0.14 5.22 71.24 0.37 0.23 16 10 C 0.51 1.31 7.91 87.66 0.69 2.00 16 11 O -0.58 -8.56 16.50 16.00 0.26 -8.30 16 12 N -0.71 3.43 5.56 -463.08 -2.57 0.86 16 13 C 0.12 -0.35 5.67 86.38 0.49 0.14 16 14 C -0.11 0.80 5.15 30.60 0.16 0.96 16 15 C -0.10 0.54 3.64 -10.27 -0.04 0.50 16 16 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 17 C -0.13 0.42 7.47 31.12 0.23 0.65 16 18 C 0.07 -0.14 5.21 31.18 0.16 0.03 16 19 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 20 O -0.58 -0.60 13.68 -148.98 -2.04 -2.64 16 21 C -0.17 0.55 7.48 31.18 0.23 0.78 16 22 C -0.17 -0.83 9.99 22.37 0.22 -0.61 16 23 C -0.06 -0.18 9.60 22.25 0.21 0.03 16 24 H 0.39 -3.02 8.70 -74.06 -0.64 -3.66 16 25 H 0.10 0.12 7.96 -2.39 -0.02 0.10 16 26 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 27 H -0.28 -0.08 7.11 99.48 0.71 0.62 16 28 H 0.15 -1.30 4.87 -2.91 -0.01 -1.31 16 29 H 0.17 -1.74 6.30 -2.91 -0.02 -1.76 16 30 H 0.13 -1.40 7.66 -2.39 -0.02 -1.42 16 31 H 0.13 -1.26 7.66 -2.39 -0.02 -1.27 16 32 H 0.42 -5.39 8.47 -92.71 -0.79 -6.17 16 33 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 34 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.09 -0.87 8.14 -2.39 -0.02 -0.88 16 36 H 0.08 -0.65 7.87 -2.39 -0.02 -0.67 16 37 H 0.08 -0.34 8.14 -2.38 -0.02 -0.36 16 38 H 0.09 -0.17 8.10 -2.39 -0.02 -0.19 16 39 H 0.39 -2.59 9.12 -74.05 -0.68 -3.26 16 40 H 0.08 -0.17 7.92 -2.39 -0.02 -0.19 16 41 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.13 0.71 8.06 -2.91 -0.02 0.68 16 43 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 Total: 0.00 -27.84 359.85 -2.55 -30.39 By element: Atomic # 1 Polarization: -20.45 SS G_CDS: -1.02 Total: -21.47 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 3.38 Total: 6.63 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -2.57 Total: 0.86 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -4.38 Total: -15.72 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.04 Total: -0.68 kcal Total: -27.84 -2.55 -30.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_2989410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.960 kcal (2) G-P(sol) polarization free energy of solvation -27.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds