Wall clock time and date at job start Tue Mar 9 2021 13:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86302 * 109.47172 * 2 1 4 4 C 1.50698 * 109.47370 * 120.00064 * 2 1 3 5 5 C 1.38267 * 119.94362 * 64.99884 * 4 2 1 6 6 C 1.38144 * 120.05822 * 180.02562 * 5 4 2 7 7 C 1.38732 * 119.94007 * 359.97438 * 6 5 4 8 8 O 1.35907 * 120.05805 * 180.02562 * 7 6 5 9 9 C 1.42889 * 117.00462 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47119 * 179.97438 * 10 9 8 12 12 O 1.21289 * 120.00259 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99950 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00085 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47255 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47363 * 180.02562 * 15 14 13 17 17 H 1.09000 * 112.84659 * 316.19687 * 16 15 14 18 18 C 1.53955 * 113.74341 * 87.39980 * 16 15 14 19 19 C 1.53776 * 87.01439 * 139.94575 * 18 16 15 20 20 H 1.09004 * 113.61446 * 89.23291 * 19 18 16 21 21 O 1.42903 * 113.61520 * 220.04549 * 19 18 16 22 22 C 1.53778 * 113.61391 * 185.00303 * 16 15 14 23 23 C 1.38732 * 119.88926 * 0.27712 * 7 6 5 24 24 C 1.38141 * 119.94458 * 359.47407 * 23 7 6 25 25 H 0.96698 * 113.99551 * 300.00250 * 1 2 3 26 26 H 1.09001 * 109.46692 * 239.99985 * 2 1 3 27 27 H 1.48498 * 109.99732 * 178.68574 * 3 2 1 28 28 H 1.48508 * 109.99923 * 300.00265 * 3 2 1 29 29 H 1.08000 * 119.97177 * 359.97267 * 5 4 2 30 30 H 1.07997 * 120.03433 * 179.97438 * 6 5 4 31 31 H 1.09002 * 109.47407 * 60.00025 * 9 8 7 32 32 H 1.09000 * 109.47427 * 300.00112 * 9 8 7 33 33 H 1.09006 * 109.46936 * 60.00257 * 10 9 8 34 34 H 1.08996 * 109.47483 * 299.99821 * 10 9 8 35 35 H 0.96999 * 120.00078 * 0.02562 * 13 11 10 36 36 H 1.09006 * 109.46577 * 60.00679 * 14 13 11 37 37 H 1.08994 * 109.47497 * 300.01036 * 14 13 11 38 38 H 1.09002 * 109.46706 * 60.00244 * 15 14 13 39 39 H 1.09002 * 109.47075 * 300.00394 * 15 14 13 40 40 H 1.08999 * 113.60951 * 25.43006 * 18 16 15 41 41 H 1.08998 * 113.66695 * 254.47177 * 18 16 15 42 42 H 0.96700 * 114.00311 * 279.14305 * 21 19 18 43 43 H 1.09004 * 113.61269 * 105.38679 * 22 16 15 44 44 H 1.09002 * 113.61517 * 334.47767 * 22 16 15 45 45 H 1.08006 * 120.02729 * 179.72381 * 23 7 6 46 46 H 1.07997 * 119.97538 * 180.23328 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6841 -2.0605 1.3972 6 6 2.1431 -2.7140 2.5244 7 6 2.8532 -2.0145 3.4893 8 8 3.3063 -2.6551 4.5990 9 6 4.0303 -1.8721 5.5500 10 6 4.4555 -2.7584 6.7224 11 6 5.2197 -1.9327 7.7251 12 8 5.4055 -0.7514 7.5222 13 7 5.6957 -2.5066 8.8478 14 6 6.4391 -1.7041 9.8222 15 6 6.8641 -2.5904 10.9947 16 6 7.6399 -1.7521 12.0128 17 1 8.3648 -1.0846 11.5468 18 6 6.7444 -1.0566 13.0542 19 6 7.8185 -1.4109 14.0960 20 1 8.5927 -0.6508 14.2008 21 8 7.2813 -1.8325 15.3514 22 6 8.2192 -2.5755 13.1752 23 6 3.0955 -0.6587 3.3222 24 6 2.6388 -0.0110 2.1907 25 1 -0.3932 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8900 27 1 3.5346 1.7702 0.0320 28 1 1.5615 2.4679 -1.2085 29 1 1.1309 -2.6045 0.6459 30 1 1.9493 -3.7684 2.6545 31 1 3.3946 -1.0660 5.9163 32 1 4.9152 -1.4492 5.0742 33 1 5.0912 -3.5647 6.3565 34 1 3.5705 -3.1808 7.1982 35 1 5.5468 -3.4512 9.0103 36 1 5.8042 -0.8970 10.1880 37 1 7.3243 -1.2826 9.3461 38 1 7.4990 -3.3972 10.6286 39 1 5.9790 -3.0121 11.4709 40 1 5.7929 -1.5621 13.2188 41 1 6.6327 0.0150 12.8893 42 1 7.0058 -1.1049 15.9256 43 1 9.2964 -2.7283 13.1078 44 1 7.6715 -3.4970 13.3730 45 1 3.6442 -0.1110 4.0741 46 1 2.8304 1.0435 2.0582 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_4549602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:18:44 Heat of formation + Delta-G solvation = -115.152925 kcal Electronic energy + Delta-G solvation = -25506.634707 eV Core-core repulsion = 21556.546868 eV Total energy + Delta-G solvation = -3950.087839 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40320 -40.84677 -40.26858 -39.15931 -37.19173 -36.82747 -35.61730 -33.50123 -32.15060 -31.69473 -31.07040 -26.90568 -26.67390 -26.01948 -24.86792 -23.41907 -22.58656 -22.21177 -21.40770 -20.43024 -19.52610 -18.45895 -18.28856 -17.65230 -17.53272 -17.26903 -16.85814 -16.58159 -16.44936 -16.19662 -15.92040 -15.57803 -15.44557 -15.34480 -14.71355 -14.65610 -14.41797 -14.32509 -14.27089 -13.86479 -13.57199 -13.40158 -13.30712 -12.90754 -12.83812 -12.66266 -12.44447 -12.21505 -12.04787 -11.97028 -11.78760 -11.72103 -11.66917 -11.19561 -11.06200 -10.66687 -10.41882 -10.16847 -10.05338 -9.22712 -5.01596 0.27264 0.29500 1.31698 1.51636 1.62017 1.71079 1.94558 2.49687 2.64929 3.31491 3.51593 3.54374 3.57066 3.62526 3.71902 3.79954 3.82884 3.88386 3.89792 3.99810 4.00882 4.12867 4.25003 4.28157 4.33857 4.39628 4.44160 4.49806 4.61424 4.64684 4.68372 4.70621 4.77440 4.81287 4.84778 4.95403 4.96721 5.02590 5.13746 5.16954 5.26509 5.27714 5.38547 5.48613 5.49702 5.71054 6.31175 6.45272 6.78035 6.86707 7.14435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.066 4.066 3 Si 0.768 3.232 4 C -0.163 4.163 5 C -0.060 4.060 6 C -0.159 4.159 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.072 3.928 10 C -0.133 4.133 11 C 0.517 3.483 12 O -0.585 6.585 13 N -0.717 5.717 14 C 0.121 3.879 15 C -0.109 4.109 16 C -0.101 4.101 17 H 0.101 0.899 18 C -0.165 4.165 19 C 0.066 3.934 20 H 0.091 0.909 21 O -0.584 6.584 22 C -0.128 4.128 23 C -0.210 4.210 24 C -0.078 4.078 25 H 0.395 0.605 26 H 0.107 0.893 27 H -0.290 1.290 28 H -0.298 1.298 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.419 0.581 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.393 0.607 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.141 0.859 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -1.287 4.770 4.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.176 4.176 3 Si 0.675 3.325 4 C -0.163 4.163 5 C -0.078 4.078 6 C -0.177 4.177 7 C 0.077 3.923 8 O -0.235 6.235 9 C -0.003 4.003 10 C -0.172 4.172 11 C 0.304 3.696 12 O -0.466 6.466 13 N -0.370 5.370 14 C -0.003 4.003 15 C -0.147 4.147 16 C -0.120 4.120 17 H 0.119 0.881 18 C -0.203 4.203 19 C 0.007 3.993 20 H 0.109 0.891 21 O -0.392 6.392 22 C -0.166 4.166 23 C -0.228 4.228 24 C -0.095 4.095 25 H 0.245 0.755 26 H 0.124 0.876 27 H -0.217 1.217 28 H -0.226 1.226 29 H 0.157 0.843 30 H 0.159 0.841 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.243 0.757 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.159 0.841 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.372 -0.964 3.513 3.893 hybrid contribution 0.122 -0.135 0.163 0.244 sum 1.494 -1.099 3.676 4.117 Atomic orbital electron populations 1.86461 1.17289 1.82157 1.50479 1.25045 0.85194 1.10350 0.97022 0.93810 0.77830 0.75929 0.84921 1.20330 1.02717 0.95280 0.97987 1.20982 0.96665 0.93768 0.96412 1.20667 1.01821 1.01362 0.93881 1.19191 0.94580 0.91389 0.87116 1.85956 1.69225 1.38874 1.29464 1.22459 0.95804 0.93698 0.88352 1.21436 1.03025 0.99138 0.93608 1.20662 0.78768 0.87520 0.82613 1.90739 1.59988 1.18144 1.77722 1.45906 1.56078 1.14519 1.20486 1.21346 0.95656 0.94326 0.88933 1.21665 1.00821 0.98010 0.94189 1.22251 0.98246 0.97932 0.93592 0.88060 1.23781 0.98606 1.01385 0.96496 1.23516 0.95784 0.97778 0.82200 0.89094 1.86483 1.83966 1.38864 1.29921 1.23134 1.01733 0.97759 0.93926 1.21430 1.06441 0.93893 1.01046 1.20989 0.95993 0.99888 0.92669 0.75545 0.87582 1.21671 1.22583 0.84310 0.84060 0.91392 0.91736 0.85585 0.85466 0.74410 0.92465 0.92230 0.89711 0.90423 0.89769 0.90832 0.75727 0.90277 0.89778 0.84148 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.70 12.83 -148.98 -1.91 -2.61 16 2 C -0.07 -0.05 2.80 71.24 0.20 0.15 16 3 Si 0.77 -0.47 29.80 68.60 2.04 1.58 16 4 C -0.16 -0.29 5.35 -19.85 -0.11 -0.40 16 5 C -0.06 -0.15 9.68 22.25 0.22 0.07 16 6 C -0.16 -0.50 9.99 22.37 0.22 -0.28 16 7 C 0.12 0.51 6.69 22.51 0.15 0.66 16 8 O -0.32 -1.01 10.14 -92.50 -0.94 -1.95 16 9 C 0.07 0.03 4.03 71.98 0.29 0.33 16 10 C -0.13 0.61 6.07 29.85 0.18 0.80 16 11 C 0.52 0.20 7.83 87.66 0.69 0.88 16 12 O -0.59 -5.61 15.98 -3.06 -0.05 -5.65 16 13 N -0.72 3.33 5.56 -463.05 -2.57 0.75 16 14 C 0.12 -0.38 5.67 86.38 0.49 0.10 16 15 C -0.11 0.75 5.17 30.60 0.16 0.90 16 16 C -0.10 0.52 3.65 -10.21 -0.04 0.48 16 17 H 0.10 -0.59 8.13 -2.39 -0.02 -0.61 16 18 C -0.16 0.58 7.48 31.18 0.23 0.81 16 19 C 0.07 -0.14 5.21 31.12 0.16 0.03 16 20 H 0.09 -0.40 8.14 -2.39 -0.02 -0.42 16 21 O -0.58 -0.66 13.67 -148.98 -2.04 -2.69 16 22 C -0.13 0.37 7.47 31.12 0.23 0.60 16 23 C -0.21 -0.57 9.04 22.36 0.20 -0.36 16 24 C -0.08 -0.08 8.66 22.25 0.19 0.11 16 25 H 0.39 -2.61 8.70 -74.06 -0.64 -3.26 16 26 H 0.11 0.18 7.96 -2.39 -0.02 0.16 16 27 H -0.29 -1.33 7.11 99.48 0.71 -0.63 16 28 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 29 H 0.14 0.08 8.06 -2.91 -0.02 0.06 16 30 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 31 H 0.07 0.10 7.61 -2.39 -0.02 0.08 16 32 H 0.06 0.13 7.63 -2.39 -0.02 0.11 16 33 H 0.13 -1.03 8.14 -2.38 -0.02 -1.05 16 34 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 35 H 0.42 -4.54 8.47 -92.71 -0.79 -5.33 16 36 H 0.06 -0.01 8.14 -2.38 -0.02 -0.03 16 37 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H 0.08 -0.55 7.86 -2.39 -0.02 -0.57 16 40 H 0.08 -0.18 7.91 -2.39 -0.02 -0.20 16 41 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.39 -2.61 9.12 -74.06 -0.68 -3.28 16 43 H 0.08 -0.30 8.14 -2.39 -0.02 -0.31 16 44 H 0.08 -0.11 8.10 -2.39 -0.02 -0.13 16 45 H 0.14 0.12 6.30 -2.91 -0.02 0.10 16 46 H 0.15 -0.47 4.90 -2.91 -0.01 -0.49 16 Total: 0.00 -21.82 380.90 -3.05 -24.86 By element: Atomic # 1 Polarization: -18.11 SS G_CDS: -1.06 Total: -19.17 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 3.47 Total: 4.88 kcal Atomic # 7 Polarization: 3.33 SS G_CDS: -2.57 Total: 0.75 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -4.93 Total: -12.91 kcal Atomic # 14 Polarization: -0.47 SS G_CDS: 2.04 Total: 1.58 kcal Total: -21.82 -3.05 -24.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_4549602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.289 kcal (2) G-P(sol) polarization free energy of solvation -21.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds