Wall clock time and date at job start Tue Mar 9 2021 13:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35996 * 117.00041 * 2 1 4 4 C 1.39151 * 120.07217 * 179.97438 * 3 2 1 5 5 O 1.35995 * 120.07763 * 0.02562 * 4 3 2 6 6 C 1.42891 * 117.00188 * 179.72322 * 5 4 3 7 7 C 1.50706 * 109.47345 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99401 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00125 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47428 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47598 * 179.97438 * 11 10 9 13 13 H 1.09003 * 112.84627 * 43.80209 * 12 11 10 14 14 C 1.53781 * 113.61564 * 174.99791 * 12 11 10 15 15 C 1.53781 * 87.07950 * 139.98729 * 14 12 11 16 16 H 1.09001 * 113.61962 * 89.19828 * 15 14 12 17 17 O 1.42907 * 113.61099 * 220.01915 * 15 14 12 18 18 C 1.53778 * 113.61730 * 272.49985 * 12 11 10 19 19 C 1.38570 * 119.85250 * 179.72809 * 4 3 2 20 20 C 1.38247 * 119.99930 * 0.25054 * 19 4 3 21 21 N 1.48001 * 119.92891 * 179.97438 * 20 19 4 22 22 O 1.21806 * 119.99922 * 0.02562 * 21 20 19 23 23 O 1.21803 * 120.00235 * 180.02562 * 21 20 19 24 24 C 1.38255 * 120.14346 * 0.02562 * 20 19 4 25 25 C 1.50701 * 119.92495 * 179.97438 * 24 20 19 26 26 O 1.42902 * 109.47213 * 74.99600 * 25 24 20 27 27 Si 1.86298 * 109.47114 * 194.99764 * 25 24 20 28 28 C 1.38246 * 120.14839 * 0.02562 * 24 20 19 29 29 H 1.09000 * 109.47497 * 300.00088 * 1 2 3 30 30 H 1.08993 * 109.47259 * 60.00814 * 1 2 3 31 31 H 1.09006 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47220 * 299.99841 * 6 5 4 33 33 H 1.08996 * 109.47672 * 59.99785 * 6 5 4 34 34 H 0.97000 * 120.00241 * 359.97438 * 9 7 6 35 35 H 1.09005 * 109.47413 * 299.99857 * 10 9 7 36 36 H 1.08999 * 109.47516 * 59.99322 * 10 9 7 37 37 H 1.09002 * 109.47078 * 299.99902 * 11 10 9 38 38 H 1.09004 * 109.47393 * 59.99963 * 11 10 9 39 39 H 1.09004 * 113.61245 * 254.53035 * 14 12 11 40 40 H 1.08997 * 113.61461 * 25.34859 * 14 12 11 41 41 H 0.96700 * 113.99763 * 179.97438 * 17 15 14 42 42 H 1.09001 * 113.60906 * 334.56408 * 18 12 11 43 43 H 1.08993 * 113.61683 * 105.46548 * 18 12 11 44 44 H 1.08001 * 120.00237 * 180.23265 * 19 4 3 45 45 H 1.08999 * 109.47099 * 314.99991 * 25 24 20 46 46 H 0.96700 * 113.99976 * 179.97438 * 26 25 24 47 47 H 1.48499 * 110.00212 * 300.00025 * 27 25 24 48 48 H 1.48497 * 110.00230 * 61.31766 * 27 25 24 49 49 H 1.07993 * 119.99877 * 179.97438 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4359 1.2863 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6002 0.3007 -0.0050 7 6 6.2519 -1.0582 -0.0048 8 8 5.5670 -2.0591 0.0002 9 7 7.5957 -1.1611 -0.0091 10 6 8.2291 -2.4821 -0.0083 11 6 9.7502 -2.3183 -0.0144 12 6 10.4118 -3.6979 -0.0129 13 1 9.9386 -4.3949 -0.7045 14 6 11.9434 -3.6467 -0.1416 15 6 11.9896 -4.7840 0.8925 16 1 11.9492 -5.7791 0.4495 17 8 13.0417 -4.6449 1.8496 18 6 10.6280 -4.2759 1.3956 19 6 4.0603 2.5233 -0.0052 20 6 3.3029 3.6799 -0.0061 21 7 3.9714 5.0003 -0.0117 22 8 5.1876 5.0672 -0.0158 23 8 3.3054 6.0201 -0.0121 24 6 1.9223 3.6057 -0.0009 25 6 1.1015 4.8696 -0.0014 26 8 1.1298 5.4555 -1.3045 27 14 -0.6579 4.4676 0.4607 28 6 1.2932 2.3747 0.0059 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 5.9032 0.8483 -0.8975 33 1 5.9098 0.8526 0.8824 34 1 8.1434 -0.3606 -0.0127 35 1 7.9259 -3.0299 0.8840 36 1 7.9199 -3.0339 -0.8959 37 1 10.0531 -1.7707 -0.9069 38 1 10.0599 -1.7664 0.8731 39 1 12.3087 -3.9373 -1.1266 40 1 12.3805 -2.7136 0.2137 41 1 13.0756 -5.3570 2.5030 42 1 10.7057 -3.5153 2.1725 43 1 9.9316 -5.0743 1.6516 44 1 5.1386 2.5840 -0.0086 45 1 1.5157 5.5721 0.7218 46 1 0.6208 6.2743 -1.3787 47 1 -1.2341 3.5106 -0.5178 48 1 -0.7044 3.8870 1.8266 49 1 0.2146 2.3196 0.0104 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:19:16 Heat of formation + Delta-G solvation = -126.273899 kcal Electronic energy + Delta-G solvation = -35104.206798 eV Core-core repulsion = 30003.938089 eV Total energy + Delta-G solvation = -5100.268708 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.160 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -43.47024 -42.23404 -41.12322 -40.38755 -39.73737 -39.16297 -37.81713 -37.15556 -36.85030 -35.69095 -32.90835 -32.77513 -31.98563 -29.70722 -28.94937 -27.98278 -26.72415 -26.04954 -25.35655 -23.97642 -23.18553 -22.64317 -21.86072 -20.82942 -20.45844 -19.94722 -19.59713 -18.90378 -18.78614 -18.38529 -18.28489 -18.15983 -17.88557 -17.69357 -17.09251 -16.92360 -16.58059 -16.46314 -16.18947 -15.94788 -15.49715 -15.38826 -15.27297 -15.07578 -14.74992 -14.35722 -14.24422 -14.09608 -13.92207 -13.59477 -13.41515 -13.34116 -13.02501 -12.75477 -12.71863 -12.69032 -12.55549 -12.47535 -12.45280 -12.40339 -12.22635 -11.99431 -11.92845 -11.69369 -11.23987 -11.11828 -10.68595 -10.64433 -10.29275 -10.24737 -9.62998 -5.01434 -1.41260 -0.58608 0.09795 0.21826 1.14206 1.15323 1.32479 1.56590 1.69313 1.76099 1.79778 2.26731 2.80711 3.02402 3.17910 3.28160 3.31733 3.45615 3.50346 3.61375 3.71661 3.75549 3.77834 3.78960 3.87600 3.91186 3.98365 3.98663 4.06362 4.07624 4.09484 4.21445 4.23563 4.36326 4.49346 4.56303 4.59190 4.59398 4.65829 4.79871 4.82749 4.93349 4.98894 5.10047 5.21608 5.24210 5.26128 5.43278 5.47901 5.87844 6.32726 6.48923 6.83518 6.85386 7.00915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.305 6.305 3 C 0.163 3.837 4 C 0.103 3.897 5 O -0.291 6.291 6 C 0.025 3.975 7 C 0.514 3.486 8 O -0.569 6.569 9 N -0.709 5.709 10 C 0.122 3.878 11 C -0.109 4.109 12 C -0.102 4.102 13 H 0.101 0.899 14 C -0.127 4.127 15 C 0.066 3.934 16 H 0.092 0.908 17 O -0.584 6.584 18 C -0.165 4.165 19 C -0.107 4.107 20 C -0.043 4.043 21 N 0.037 4.963 22 O -0.193 6.193 23 O -0.139 6.139 24 C -0.004 4.004 25 C -0.100 4.100 26 O -0.553 6.553 27 Si 0.778 3.222 28 C -0.187 4.187 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.422 0.578 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.393 0.607 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.191 0.809 45 H 0.101 0.899 46 H 0.408 0.592 47 H -0.268 1.268 48 H -0.277 1.277 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 0.779 0.783 2.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.216 6.216 3 C 0.115 3.885 4 C 0.056 3.944 5 O -0.203 6.203 6 C -0.052 4.052 7 C 0.300 3.700 8 O -0.448 6.448 9 N -0.364 5.364 10 C -0.001 4.001 11 C -0.147 4.147 12 C -0.121 4.121 13 H 0.120 0.880 14 C -0.165 4.165 15 C 0.007 3.993 16 H 0.110 0.890 17 O -0.392 6.392 18 C -0.203 4.203 19 C -0.126 4.126 20 C -0.127 4.127 21 N 0.552 4.448 22 O -0.400 6.400 23 O -0.360 6.360 24 C -0.006 4.006 25 C -0.209 4.209 26 O -0.364 6.364 27 Si 0.680 3.320 28 C -0.206 4.206 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.243 0.757 42 H 0.103 0.897 43 H 0.090 0.910 44 H 0.208 0.792 45 H 0.119 0.881 46 H 0.261 0.739 47 H -0.195 1.195 48 H -0.203 1.203 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.944 -1.606 0.548 3.398 hybrid contribution 0.916 0.110 0.342 0.984 sum -2.028 -1.496 0.890 2.673 Atomic orbital electron populations 1.23675 0.75280 1.07140 1.02875 1.86313 1.24235 1.24600 1.86497 1.18662 0.89580 0.86004 0.94294 1.17880 0.88357 0.85483 1.02699 1.86297 1.18735 1.26610 1.88668 1.22962 0.78489 0.96277 1.07483 1.20298 0.83164 0.90348 0.76194 1.90781 1.64042 1.39881 1.50077 1.45712 1.05098 1.11003 1.74557 1.21393 0.93177 0.83656 1.01864 1.21677 0.91584 0.97268 1.04122 1.22220 0.95067 0.97170 0.97597 0.88038 1.23134 0.95643 0.98915 0.98791 1.23516 0.86218 0.98992 0.90553 0.89045 1.86486 1.53870 1.53346 1.45479 1.23757 0.97698 1.01459 0.97400 1.20974 1.03244 0.87940 1.00464 1.20536 0.92382 0.82771 1.17016 1.43444 1.00864 1.02980 0.97470 1.94525 0.96129 1.93942 1.55362 1.94477 1.64615 1.24830 1.52031 1.19327 0.90882 0.96166 0.94235 1.25232 1.11052 0.93400 0.91183 1.86385 1.77592 1.45517 1.26868 0.93528 0.75714 0.85882 0.76899 1.21046 1.01313 0.89514 1.08702 0.90872 0.90905 0.85064 0.85256 0.85145 0.74037 0.92373 0.92055 0.89435 0.90201 0.90250 0.89702 0.75741 0.89742 0.90962 0.79207 0.88119 0.73948 1.19480 1.20318 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.30 -1.73 10.28 -79.64 -0.82 -2.55 16 3 C 0.16 0.84 6.70 22.57 0.15 0.99 16 4 C 0.10 0.47 6.70 22.57 0.15 0.62 16 5 O -0.29 -1.81 9.45 -67.08 -0.63 -2.44 16 6 C 0.03 -0.06 5.22 71.24 0.37 0.31 16 7 C 0.51 1.58 7.91 87.66 0.69 2.28 16 8 O -0.57 -8.33 16.50 16.01 0.26 -8.07 16 9 N -0.71 2.81 5.56 -463.07 -2.57 0.23 16 10 C 0.12 -0.30 5.66 86.38 0.49 0.19 16 11 C -0.11 0.72 5.17 30.59 0.16 0.88 16 12 C -0.10 0.48 3.65 -10.27 -0.04 0.44 16 13 H 0.10 -0.54 8.13 -2.39 -0.02 -0.56 16 14 C -0.13 0.33 7.47 31.12 0.23 0.56 16 15 C 0.07 -0.11 5.21 31.12 0.16 0.05 16 16 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 17 O -0.58 -0.88 13.67 -148.98 -2.04 -2.92 16 18 C -0.17 0.49 7.46 31.12 0.23 0.72 16 19 C -0.11 -0.23 8.54 22.35 0.19 -0.04 16 20 C -0.04 -0.26 6.85 36.38 0.25 -0.01 16 21 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 22 O -0.19 -1.97 18.44 18.88 0.35 -1.62 16 23 O -0.14 -1.33 14.62 25.10 0.37 -0.96 16 24 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 25 C -0.10 -0.01 1.73 71.24 0.12 0.12 16 26 O -0.55 -0.34 11.77 -129.63 -1.53 -1.87 16 27 Si 0.78 -3.96 30.19 68.60 2.07 -1.89 16 28 C -0.19 -0.54 7.65 22.35 0.17 -0.37 16 29 H 0.07 -0.39 7.65 -2.39 -0.02 -0.41 16 30 H 0.07 -0.34 7.68 -2.39 -0.02 -0.36 16 31 H 0.13 -0.82 8.14 -2.38 -0.02 -0.84 16 32 H 0.13 -1.11 7.66 -2.39 -0.02 -1.13 16 33 H 0.13 -1.16 7.66 -2.39 -0.02 -1.18 16 34 H 0.42 -4.76 8.47 -92.71 -0.79 -5.55 16 35 H 0.06 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.08 -0.57 7.84 -2.38 -0.02 -0.59 16 39 H 0.08 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.08 -0.09 8.10 -2.39 -0.02 -0.11 16 41 H 0.39 -2.44 9.12 -74.06 -0.68 -3.11 16 42 H 0.08 -0.13 7.89 -2.39 -0.02 -0.15 16 43 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.19 -0.69 5.85 -2.91 -0.02 -0.71 16 45 H 0.10 -0.03 6.07 -2.39 -0.01 -0.05 16 46 H 0.41 -3.87 8.74 -74.06 -0.65 -4.52 16 47 H -0.27 0.46 6.75 99.48 0.67 1.13 16 48 H -0.28 0.17 7.11 99.48 0.71 0.88 16 49 H 0.17 -0.10 3.13 -2.91 -0.01 -0.11 16 Total: 0.00 -31.83 410.81 -1.46 -33.29 By element: Atomic # 1 Polarization: -17.99 SS G_CDS: -1.06 Total: -19.04 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.35 Total: 7.72 kcal Atomic # 7 Polarization: 3.14 SS G_CDS: -2.78 Total: 0.36 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -4.04 Total: -20.44 kcal Atomic # 14 Polarization: -3.96 SS G_CDS: 2.07 Total: -1.89 kcal Total: -31.83 -1.46 -33.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.989 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds