Wall clock time and date at job start Tue Mar 9 2021 13:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33819 * 122.44836 * 2 1 4 4 C 1.50693 * 124.52289 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47612 * 29.99450 * 4 3 2 6 6 Si 1.86297 * 109.47086 * 149.99772 * 4 3 2 7 7 S 1.70619 * 110.95243 * 179.85571 * 3 2 1 8 8 C 1.75836 * 91.56263 * 0.34151 * 7 3 2 9 9 C 1.46583 * 125.45507 * 179.78887 * 8 7 3 10 10 O 1.21706 * 119.99519 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00530 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00343 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47271 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47385 * 180.02562 * 13 12 11 15 15 H 1.09004 * 112.84774 * 316.19663 * 14 13 12 16 16 C 1.53784 * 113.61237 * 87.49828 * 14 13 12 17 17 C 1.53778 * 87.07542 * 139.98497 * 16 14 13 18 18 H 1.09004 * 113.69420 * 89.13338 * 17 16 14 19 19 O 1.42911 * 113.61556 * 220.01939 * 17 16 14 20 20 C 1.53777 * 87.08577 * 334.56587 * 17 16 14 21 21 C 1.36647 * 109.08357 * 359.80690 * 8 7 3 22 22 H 1.09002 * 109.47152 * 269.73468 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.73569 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.73549 * 1 2 3 25 25 H 1.09003 * 109.47106 * 269.99796 * 4 3 2 26 26 H 0.96706 * 113.99493 * 59.99851 * 5 4 3 27 27 H 1.48498 * 110.00271 * 58.68167 * 6 4 3 28 28 H 1.48504 * 110.00160 * 179.97438 * 6 4 3 29 29 H 0.97002 * 119.99791 * 0.02562 * 11 9 8 30 30 H 1.09003 * 109.46763 * 300.00322 * 12 11 9 31 31 H 1.08998 * 109.46889 * 60.00242 * 12 11 9 32 32 H 1.08999 * 109.46901 * 300.00394 * 13 12 11 33 33 H 1.08998 * 109.46873 * 59.99705 * 13 12 11 34 34 H 1.08993 * 113.61852 * 254.52963 * 16 14 13 35 35 H 1.08998 * 113.61371 * 25.43815 * 16 14 13 36 36 H 0.96697 * 113.99947 * 277.49999 * 19 17 16 37 37 H 1.08993 * 113.61998 * 270.88541 * 20 17 16 38 38 H 1.09003 * 113.69140 * 139.98848 * 20 17 16 39 39 H 1.08002 * 123.35104 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4980 0.6745 6 14 2.7928 3.6824 0.8787 7 16 3.8970 0.7892 0.0040 8 6 3.5937 -0.9428 -0.0048 9 6 4.6232 -1.9862 -0.0104 10 8 4.3001 -3.1596 -0.0168 11 7 5.9273 -1.6463 -0.0086 12 6 6.9561 -2.6892 -0.0148 13 6 8.3413 -2.0393 -0.0105 14 6 9.4158 -3.1284 -0.0177 15 1 9.1969 -3.9435 0.6723 16 6 9.8046 -3.6009 -1.4286 17 6 11.2586 -3.6395 -0.9294 18 1 11.5455 -4.5947 -0.4897 19 8 12.2057 -3.1631 -1.8876 20 6 10.8476 -2.5820 0.1087 21 6 2.2446 -1.1601 -0.0059 22 1 -0.3633 -0.0048 1.0277 23 1 -0.3633 -0.8876 -0.5179 24 1 -0.3633 0.8924 -0.5097 25 1 1.4930 2.8508 -1.0270 26 1 0.4267 2.2092 1.5961 27 1 4.1168 3.6864 0.2062 28 1 2.2231 5.0538 0.8856 29 1 6.1848 -0.7111 -0.0031 30 1 6.8455 -3.3140 0.8715 31 1 6.8454 -3.3035 -0.9084 32 1 8.4520 -1.4143 -0.8966 33 1 8.4517 -1.4253 0.8833 34 1 9.4052 -4.5817 -1.6862 35 1 9.6285 -2.8543 -2.2030 36 1 12.4681 -3.8236 -2.5432 37 1 10.9566 -1.5570 -0.2454 38 1 11.2896 -2.7392 1.0926 39 1 1.8019 -2.1452 -0.0113 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17837616_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:18 Heat of formation + Delta-G solvation = -69.122722 kcal Electronic energy + Delta-G solvation = -21195.680161 eV Core-core repulsion = 17810.960398 eV Total energy + Delta-G solvation = -3384.719762 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94237 -40.41689 -39.78082 -37.42969 -36.77852 -35.60176 -32.55552 -31.33695 -30.26271 -27.06750 -26.75934 -25.32861 -24.13493 -22.70130 -21.73963 -20.56790 -20.19222 -19.38105 -18.42835 -17.81953 -17.26475 -16.90990 -16.78331 -16.43186 -16.30646 -15.73784 -15.44637 -15.33859 -15.07787 -14.60879 -14.48090 -14.13923 -13.99469 -13.50157 -13.48598 -13.41262 -13.10856 -13.01146 -12.78553 -12.54075 -12.46887 -12.27284 -12.08548 -11.80603 -11.75056 -11.30162 -11.07273 -10.75044 -10.74836 -10.20501 -9.68830 -9.45900 -5.21540 -0.62956 0.26787 0.68869 1.05754 1.32218 1.43325 1.80257 2.02747 2.19656 3.17316 3.21274 3.39068 3.50449 3.52927 3.68014 3.71738 3.87725 4.00279 4.09203 4.17986 4.23484 4.25904 4.40596 4.46684 4.56712 4.59261 4.72817 4.73843 4.78735 4.83517 4.85286 4.92139 5.00943 5.03238 5.14646 5.30093 5.36320 5.37958 5.44695 6.34534 6.35214 6.66795 7.10216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.091 4.091 3 C -0.237 4.237 4 C -0.027 4.027 5 O -0.529 6.529 6 Si 0.659 3.341 7 S 0.192 5.808 8 C -0.262 4.262 9 C 0.591 3.409 10 O -0.525 6.525 11 N -0.728 5.728 12 C 0.121 3.879 13 C -0.121 4.121 14 C -0.106 4.106 15 H 0.098 0.902 16 C -0.167 4.167 17 C 0.074 3.926 18 H 0.082 0.918 19 O -0.561 6.561 20 C -0.124 4.124 21 C -0.046 4.046 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.124 0.876 26 H 0.381 0.619 27 H -0.237 1.237 28 H -0.234 1.234 29 H 0.398 0.602 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.379 0.621 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 1.459 2.269 3.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.356 4.356 4 C -0.140 4.140 5 O -0.335 6.335 6 Si 0.558 3.442 7 S 0.460 5.540 8 C -0.382 4.382 9 C 0.377 3.623 10 O -0.403 6.403 11 N -0.380 5.380 12 C -0.002 4.002 13 C -0.158 4.158 14 C -0.125 4.125 15 H 0.116 0.884 16 C -0.205 4.205 17 C 0.015 3.985 18 H 0.100 0.900 19 O -0.367 6.367 20 C -0.162 4.162 21 C -0.080 4.080 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.229 0.771 27 H -0.161 1.161 28 H -0.157 1.157 29 H 0.232 0.768 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.227 0.773 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.898 2.995 1.979 4.613 hybrid contribution -1.301 -1.306 -0.867 2.038 sum 1.597 1.688 1.111 2.576 Atomic orbital electron populations 1.20650 0.88501 1.03405 1.02881 1.18726 0.98476 0.90473 1.02655 1.24467 0.98356 1.00952 1.11815 1.24465 0.92242 0.95299 1.02018 1.86533 1.27691 1.90031 1.29259 0.94807 0.78200 0.80753 0.90422 1.83023 1.03365 0.98359 1.69205 1.24576 0.98016 0.96999 1.18595 1.16938 0.81591 0.87424 0.76307 1.90863 1.81624 1.18194 1.49618 1.45875 1.05549 1.10445 1.76154 1.21429 0.85678 0.90142 1.02987 1.21764 0.92639 0.98199 1.03226 1.22236 0.93848 0.98411 0.98025 0.88403 1.23793 0.97065 1.02420 0.97173 1.23347 0.87241 0.97437 0.90510 0.89995 1.86531 1.62989 1.42693 1.44479 1.23118 0.94623 0.99815 0.98632 1.20747 0.90910 1.00176 0.96120 0.90886 0.91913 0.89663 0.85885 0.77090 1.16135 1.15722 0.76753 0.90942 0.90983 0.90841 0.90680 0.91070 0.89124 0.77343 0.89041 0.90629 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 8.69 36.01 0.31 0.38 16 2 C -0.09 -0.03 5.75 -106.45 -0.61 -0.65 16 3 C -0.24 0.09 5.54 -35.86 -0.20 -0.10 16 4 C -0.03 0.04 2.76 36.00 0.10 0.14 16 5 O -0.53 0.78 9.85 -35.23 -0.35 0.43 16 6 Si 0.66 -1.34 31.31 -169.99 -5.32 -6.66 16 7 S 0.19 -0.13 19.78 -107.50 -2.13 -2.25 16 8 C -0.26 -0.44 6.45 -36.79 -0.24 -0.67 16 9 C 0.59 1.85 7.78 -12.90 -0.10 1.75 16 10 O -0.53 -3.55 16.84 5.18 0.09 -3.47 16 11 N -0.73 -0.17 5.55 -61.65 -0.34 -0.51 16 12 C 0.12 -0.05 5.67 -4.04 -0.02 -0.07 16 13 C -0.12 0.27 5.17 -26.73 -0.14 0.14 16 14 C -0.11 0.21 3.65 -89.81 -0.33 -0.12 16 15 H 0.10 -0.23 8.13 -51.93 -0.42 -0.66 16 16 C -0.17 0.22 7.46 -25.92 -0.19 0.03 16 17 C 0.07 -0.06 5.21 -25.92 -0.14 -0.19 16 18 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 19 O -0.56 -0.40 13.67 -35.23 -0.48 -0.89 16 20 C -0.12 0.13 7.47 -25.92 -0.19 -0.06 16 21 C -0.05 -0.07 9.80 -40.44 -0.40 -0.47 16 22 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 23 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 24 H 0.08 -0.01 6.40 -51.93 -0.33 -0.34 16 25 H 0.12 -0.13 7.96 -51.93 -0.41 -0.55 16 26 H 0.38 -1.83 8.66 45.56 0.39 -1.43 16 27 H -0.24 0.09 7.09 56.52 0.40 0.49 16 28 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 29 H 0.40 -0.76 7.59 -40.82 -0.31 -1.07 16 30 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.07 -0.16 7.84 -51.93 -0.41 -0.57 16 33 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.11 8.14 -51.93 -0.42 -0.54 16 35 H 0.09 -0.06 7.89 -51.93 -0.41 -0.47 16 36 H 0.38 -1.21 9.12 45.56 0.42 -0.80 16 37 H 0.09 -0.03 8.10 -51.93 -0.42 -0.45 16 38 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 39 H 0.16 0.24 8.06 -52.49 -0.42 -0.18 16 LS Contribution 337.47 15.07 5.09 5.09 Total: 0.00 -7.58 337.47 -10.50 -18.08 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: -4.91 Total: -9.91 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -2.14 Total: 0.09 kcal Atomic # 7 Polarization: -0.17 SS G_CDS: -0.34 Total: -0.51 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -0.74 Total: -3.92 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: -5.32 Total: -6.66 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -2.13 Total: -2.25 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -7.58 -10.50 -18.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.042 kcal (2) G-P(sol) polarization free energy of solvation -7.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds