Wall clock time and date at job start Tue Mar 9 2021 13:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33819 * 122.44836 * 2 1 4 4 C 1.50693 * 124.52289 * 0.02562 * 3 2 1 5 5 O 1.42897 * 109.47612 * 29.99450 * 4 3 2 6 6 Si 1.86297 * 109.47086 * 149.99772 * 4 3 2 7 7 S 1.70619 * 110.95243 * 179.85571 * 3 2 1 8 8 C 1.75836 * 91.56263 * 0.34151 * 7 3 2 9 9 C 1.46583 * 125.45507 * 179.78887 * 8 7 3 10 10 O 1.21706 * 119.99519 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00530 * 0.02562 * 9 8 7 12 12 C 1.46498 * 120.00343 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47271 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47385 * 180.02562 * 13 12 11 15 15 H 1.09004 * 112.84774 * 316.19663 * 14 13 12 16 16 C 1.53784 * 113.61237 * 87.49828 * 14 13 12 17 17 C 1.53778 * 87.07542 * 139.98497 * 16 14 13 18 18 H 1.09004 * 113.69420 * 89.13338 * 17 16 14 19 19 O 1.42911 * 113.61556 * 220.01939 * 17 16 14 20 20 C 1.53777 * 87.08577 * 334.56587 * 17 16 14 21 21 C 1.36647 * 109.08357 * 359.80690 * 8 7 3 22 22 H 1.09002 * 109.47152 * 269.73468 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.73569 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.73549 * 1 2 3 25 25 H 1.09003 * 109.47106 * 269.99796 * 4 3 2 26 26 H 0.96706 * 113.99493 * 59.99851 * 5 4 3 27 27 H 1.48498 * 110.00271 * 58.68167 * 6 4 3 28 28 H 1.48504 * 110.00160 * 179.97438 * 6 4 3 29 29 H 0.97002 * 119.99791 * 0.02562 * 11 9 8 30 30 H 1.09003 * 109.46763 * 300.00322 * 12 11 9 31 31 H 1.08998 * 109.46889 * 60.00242 * 12 11 9 32 32 H 1.08999 * 109.46901 * 300.00394 * 13 12 11 33 33 H 1.08998 * 109.46873 * 59.99705 * 13 12 11 34 34 H 1.08993 * 113.61852 * 254.52963 * 16 14 13 35 35 H 1.08998 * 113.61371 * 25.43815 * 16 14 13 36 36 H 0.96697 * 113.99947 * 277.49999 * 19 17 16 37 37 H 1.08993 * 113.61998 * 270.88541 * 20 17 16 38 38 H 1.09003 * 113.69140 * 139.98848 * 20 17 16 39 39 H 1.08002 * 123.35104 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4980 0.6745 6 14 2.7928 3.6824 0.8787 7 16 3.8970 0.7892 0.0040 8 6 3.5937 -0.9428 -0.0048 9 6 4.6232 -1.9862 -0.0104 10 8 4.3001 -3.1596 -0.0168 11 7 5.9273 -1.6463 -0.0086 12 6 6.9561 -2.6892 -0.0148 13 6 8.3413 -2.0393 -0.0105 14 6 9.4158 -3.1284 -0.0177 15 1 9.1969 -3.9435 0.6723 16 6 9.8046 -3.6009 -1.4286 17 6 11.2586 -3.6395 -0.9294 18 1 11.5455 -4.5947 -0.4897 19 8 12.2057 -3.1631 -1.8876 20 6 10.8476 -2.5820 0.1087 21 6 2.2446 -1.1601 -0.0059 22 1 -0.3633 -0.0048 1.0277 23 1 -0.3633 -0.8876 -0.5179 24 1 -0.3633 0.8924 -0.5097 25 1 1.4930 2.8508 -1.0270 26 1 0.4267 2.2092 1.5961 27 1 4.1168 3.6864 0.2062 28 1 2.2231 5.0538 0.8856 29 1 6.1848 -0.7111 -0.0031 30 1 6.8455 -3.3140 0.8715 31 1 6.8454 -3.3035 -0.9084 32 1 8.4520 -1.4143 -0.8966 33 1 8.4517 -1.4253 0.8833 34 1 9.4052 -4.5817 -1.6862 35 1 9.6285 -2.8543 -2.2030 36 1 12.4681 -3.8236 -2.5432 37 1 10.9566 -1.5570 -0.2454 38 1 11.2896 -2.7392 1.0926 39 1 1.8019 -2.1452 -0.0113 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:16 Heat of formation + Delta-G solvation = -69.485610 kcal Electronic energy + Delta-G solvation = -21195.695897 eV Core-core repulsion = 17810.960398 eV Total energy + Delta-G solvation = -3384.735498 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06243 -40.35412 -39.79949 -37.35774 -36.81605 -35.67198 -32.59634 -31.30817 -30.21041 -27.06338 -26.66824 -25.28411 -24.13941 -22.64625 -21.84158 -20.46618 -20.18271 -19.41722 -18.37873 -17.80876 -17.29207 -16.93561 -16.83636 -16.36918 -16.25647 -15.72600 -15.42829 -15.33076 -15.16982 -14.57624 -14.47766 -14.13293 -13.95699 -13.47671 -13.40557 -13.34628 -13.10733 -12.98113 -12.72822 -12.48776 -12.44348 -12.25436 -11.98394 -11.78414 -11.67609 -11.32612 -11.14561 -10.68178 -10.67457 -10.32977 -9.69530 -9.43825 -5.06906 -0.69444 0.25221 0.67779 1.10078 1.31358 1.54044 1.89374 1.96092 2.03573 3.30381 3.36310 3.49961 3.59306 3.62704 3.70595 3.78875 4.00043 4.08362 4.08679 4.23869 4.25453 4.36895 4.44067 4.58607 4.60248 4.65358 4.80840 4.81813 4.84620 4.90914 4.94091 4.99846 5.01343 5.10526 5.24509 5.26779 5.38456 5.47731 5.49237 6.27737 6.66666 6.87101 6.96003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.100 4.100 3 C -0.234 4.234 4 C -0.031 4.031 5 O -0.539 6.539 6 Si 0.730 3.270 7 S 0.234 5.766 8 C -0.284 4.284 9 C 0.587 3.413 10 O -0.572 6.572 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.111 4.111 14 C -0.100 4.100 15 H 0.104 0.896 16 C -0.166 4.166 17 C 0.067 3.933 18 H 0.093 0.907 19 O -0.584 6.584 20 C -0.127 4.127 21 C -0.055 4.055 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.122 0.878 26 H 0.396 0.604 27 H -0.254 1.254 28 H -0.273 1.273 29 H 0.410 0.590 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.393 0.607 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 2.303 2.789 4.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.353 4.353 4 C -0.143 4.143 5 O -0.347 6.347 6 Si 0.632 3.368 7 S 0.503 5.497 8 C -0.404 4.404 9 C 0.374 3.626 10 O -0.453 6.453 11 N -0.368 5.368 12 C -0.001 4.001 13 C -0.149 4.149 14 C -0.119 4.119 15 H 0.123 0.877 16 C -0.204 4.204 17 C 0.008 3.992 18 H 0.111 0.889 19 O -0.392 6.392 20 C -0.164 4.164 21 C -0.089 4.089 22 H 0.104 0.896 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.246 0.754 27 H -0.180 1.180 28 H -0.199 1.199 29 H 0.246 0.754 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.215 3.843 2.502 5.601 hybrid contribution -1.389 -1.504 -1.050 2.301 sum 1.826 2.339 1.452 3.304 Atomic orbital electron populations 1.20635 0.87812 1.03008 1.03602 1.18778 0.99024 0.90205 1.03179 1.24688 0.98677 1.01269 1.10703 1.24600 0.92649 0.94747 1.02327 1.86509 1.27549 1.90060 1.30584 0.93978 0.75928 0.77788 0.89125 1.82816 1.02753 0.95965 1.68177 1.24551 0.97768 0.98278 1.19791 1.17206 0.82525 0.87116 0.75703 1.90828 1.82407 1.20021 1.52058 1.45831 1.04869 1.11320 1.74737 1.21450 0.86424 0.90075 1.02196 1.21697 0.91146 0.98082 1.03940 1.22212 0.93453 0.98549 0.97665 0.87740 1.23757 0.96938 1.02329 0.97345 1.23507 0.87191 0.97977 0.90476 0.88895 1.86485 1.63401 1.44066 1.45261 1.23128 0.95144 0.99338 0.98836 1.20820 0.91243 1.00401 0.96444 0.89634 0.92162 0.90114 0.86059 0.75357 1.17996 1.19889 0.75374 0.91465 0.92120 0.90575 0.89480 0.90841 0.89951 0.75733 0.89859 0.90082 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.14 8.69 71.24 0.62 0.76 16 2 C -0.10 -0.08 5.75 -21.05 -0.12 -0.20 16 3 C -0.23 0.33 5.54 24.68 0.14 0.46 16 4 C -0.03 0.11 2.76 71.23 0.20 0.30 16 5 O -0.54 2.07 9.85 -148.98 -1.47 0.60 16 6 Si 0.73 -3.56 31.31 68.60 2.15 -1.41 16 7 S 0.23 -0.46 19.78 -56.49 -1.12 -1.58 16 8 C -0.28 -1.11 6.45 24.08 0.16 -0.96 16 9 C 0.59 4.31 7.78 86.42 0.67 4.99 16 10 O -0.57 -8.89 16.84 -4.37 -0.07 -8.96 16 11 N -0.72 -0.56 5.55 -467.17 -2.59 -3.15 16 12 C 0.12 -0.05 5.67 86.38 0.49 0.44 16 13 C -0.11 0.55 5.17 30.59 0.16 0.71 16 14 C -0.10 0.42 3.65 -10.27 -0.04 0.38 16 15 H 0.10 -0.55 8.13 -2.39 -0.02 -0.57 16 16 C -0.17 0.41 7.46 31.12 0.23 0.65 16 17 C 0.07 -0.10 5.21 31.12 0.16 0.06 16 18 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 19 O -0.58 -0.96 13.67 -148.98 -2.04 -2.99 16 20 C -0.13 0.30 7.47 31.12 0.23 0.53 16 21 C -0.06 -0.23 9.80 21.72 0.21 -0.02 16 22 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 23 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 24 H 0.08 -0.03 6.40 -2.38 -0.02 -0.05 16 25 H 0.12 -0.35 7.96 -2.39 -0.02 -0.37 16 26 H 0.40 -4.29 8.66 -74.05 -0.64 -4.94 16 27 H -0.25 0.50 7.09 99.48 0.71 1.20 16 28 H -0.27 -0.49 7.11 99.48 0.71 0.21 16 29 H 0.41 -1.76 7.59 -92.71 -0.70 -2.46 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.08 -0.38 7.84 -2.39 -0.02 -0.40 16 33 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.08 -0.06 7.89 -2.39 -0.02 -0.08 16 36 H 0.39 -2.41 9.12 -74.06 -0.68 -3.08 16 37 H 0.08 -0.05 8.10 -2.39 -0.02 -0.07 16 38 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 Total: 0.00 -18.21 337.47 -2.93 -21.14 By element: Atomic # 1 Polarization: -10.85 SS G_CDS: -0.90 Total: -11.74 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 3.11 Total: 8.10 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -2.59 Total: -3.15 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -3.58 Total: -11.35 kcal Atomic # 14 Polarization: -3.56 SS G_CDS: 2.15 Total: -1.41 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.12 Total: -1.58 kcal Total: -18.21 -2.93 -21.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.347 kcal (2) G-P(sol) polarization free energy of solvation -18.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds