Wall clock time and date at job start Tue Mar 9 2021 13:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47477 * 2 1 4 4 C 1.50699 * 109.46758 * 119.99751 * 2 1 3 5 5 C 1.32772 * 124.71478 * 64.98530 * 4 2 1 6 6 C 1.44427 * 113.08659 * 180.02562 * 5 4 2 7 7 C 1.47183 * 123.46232 * 180.02562 * 6 5 4 8 8 O 1.21633 * 120.00009 * 359.96707 * 7 6 5 9 9 N 1.34784 * 120.00123 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00126 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47162 * 179.97438 * 11 10 9 13 13 H 1.08993 * 112.85187 * 43.80819 * 12 11 10 14 14 C 1.53783 * 113.61442 * 175.00324 * 12 11 10 15 15 C 1.53780 * 87.08065 * 139.98232 * 14 12 11 16 16 H 1.08996 * 113.61658 * 89.11629 * 15 14 12 17 17 O 1.42912 * 113.61323 * 219.93467 * 15 14 12 18 18 C 1.53779 * 113.61463 * 272.49841 * 12 11 10 19 19 C 1.36011 * 113.07699 * 359.97438 * 6 5 4 20 20 S 1.70448 * 110.81640 * 0.02562 * 19 6 5 21 21 H 0.96700 * 114.00232 * 300.00414 * 1 2 3 22 22 H 1.08997 * 109.47276 * 239.99036 * 2 1 3 23 23 H 1.48509 * 109.99816 * 299.99509 * 3 2 1 24 24 H 1.48501 * 110.00333 * 61.31032 * 3 2 1 25 25 H 1.07997 * 123.45872 * 359.97438 * 5 4 2 26 26 H 0.97000 * 119.99409 * 359.97438 * 9 7 6 27 27 H 1.08997 * 109.47139 * 300.00220 * 10 9 7 28 28 H 1.09004 * 109.47047 * 59.99584 * 10 9 7 29 29 H 1.08997 * 109.47819 * 300.00464 * 11 10 9 30 30 H 1.09004 * 109.46947 * 60.00183 * 11 10 9 31 31 H 1.08997 * 113.61499 * 254.53003 * 14 12 11 32 32 H 1.09008 * 113.61415 * 25.35012 * 14 12 11 33 33 H 0.96695 * 113.99758 * 180.02562 * 17 15 14 34 34 H 1.09000 * 113.61684 * 334.56693 * 18 12 11 35 35 H 1.09001 * 113.61247 * 105.47014 * 18 12 11 36 36 H 1.08001 * 124.59691 * 180.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7481 -2.0002 1.4866 6 6 2.3351 -2.4179 2.7384 7 6 2.2686 -3.7981 3.2454 8 8 1.6960 -4.6559 2.6006 9 7 2.8422 -4.1114 4.4242 10 6 2.7755 -5.4850 4.9290 11 6 3.4995 -5.5696 6.2742 12 6 3.4293 -7.0041 6.8018 13 1 3.6281 -7.7487 6.0311 14 6 4.2331 -7.2252 8.0940 15 6 3.0689 -8.1077 8.5741 16 1 3.1681 -9.1548 8.2884 17 8 2.7541 -7.9373 9.9577 18 6 2.1669 -7.2945 7.6306 19 6 2.9567 -1.4051 3.4000 20 16 2.8392 0.0525 2.5243 21 1 -0.3933 0.4417 0.7650 22 1 1.7923 -0.5140 -0.8899 23 1 1.5617 2.4678 -1.2086 24 1 1.5879 2.4586 1.2241 25 1 1.2143 -2.6683 0.8271 26 1 3.2990 -3.4273 4.9382 27 1 1.7326 -5.7743 5.0584 28 1 3.2533 -6.1576 4.2166 29 1 4.5423 -5.2804 6.1444 30 1 3.0219 -4.8970 6.9867 31 1 5.1627 -7.7736 7.9415 32 1 4.3683 -6.3190 8.6846 33 1 2.0229 -8.4900 10.2656 34 1 1.7360 -6.4077 8.0952 35 1 1.4284 -7.8990 7.1040 36 1 3.4569 -1.5101 4.3514 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17837616_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:19 Heat of formation + Delta-G solvation = -68.542170 kcal Electronic energy + Delta-G solvation = -19263.548279 eV Core-core repulsion = 16034.391310 eV Total energy + Delta-G solvation = -3229.156969 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09742 -40.32337 -38.90706 -37.26053 -36.80847 -35.65912 -32.44687 -31.02498 -26.98868 -26.75910 -26.49336 -24.60718 -22.63425 -22.09000 -20.65922 -20.32146 -19.03221 -18.45176 -18.03483 -17.76832 -16.84502 -16.73657 -16.35603 -16.23391 -15.69523 -15.38802 -15.33089 -15.09010 -14.42837 -14.22131 -14.06938 -13.65863 -13.58596 -13.39929 -13.29141 -12.73957 -12.63690 -12.46950 -12.43593 -11.97924 -11.87091 -11.65885 -11.19142 -11.06389 -10.76113 -10.66233 -10.28373 -10.00384 -9.45964 -5.03306 -0.35162 0.38739 0.69049 0.80439 1.22309 1.55642 1.91051 2.08487 2.24095 3.29370 3.32053 3.50792 3.58988 3.62993 3.79194 3.88954 3.96228 3.99933 4.10878 4.24074 4.30477 4.37991 4.49706 4.61179 4.67954 4.70340 4.81135 4.84336 4.94698 4.97890 5.01866 5.11661 5.16181 5.26299 5.34491 5.49182 6.40378 6.43293 6.86614 7.11469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.048 4.048 3 Si 0.730 3.270 4 C -0.245 4.245 5 C -0.076 4.076 6 C -0.184 4.184 7 C 0.572 3.428 8 O -0.587 6.587 9 N -0.712 5.712 10 C 0.122 3.878 11 C -0.108 4.108 12 C -0.101 4.101 13 H 0.101 0.899 14 C -0.126 4.126 15 C 0.067 3.933 16 H 0.092 0.908 17 O -0.583 6.583 18 C -0.166 4.166 19 C -0.190 4.190 20 S 0.252 5.748 21 H 0.388 0.612 22 H 0.129 0.871 23 H -0.277 1.277 24 H -0.249 1.249 25 H 0.132 0.868 26 H 0.415 0.585 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.393 0.607 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 3.152 3.809 7.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.158 4.158 3 Si 0.631 3.369 4 C -0.362 4.362 5 C -0.106 4.106 6 C -0.201 4.201 7 C 0.359 3.641 8 O -0.468 6.468 9 N -0.364 5.364 10 C -0.002 4.002 11 C -0.146 4.146 12 C -0.120 4.120 13 H 0.120 0.880 14 C -0.164 4.164 15 C 0.008 3.992 16 H 0.110 0.890 17 O -0.392 6.392 18 C -0.204 4.204 19 C -0.328 4.328 20 S 0.518 5.482 21 H 0.238 0.762 22 H 0.146 0.854 23 H -0.203 1.203 24 H -0.174 1.174 25 H 0.149 0.851 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.456 4.948 3.063 7.977 hybrid contribution -2.137 -2.200 0.334 3.085 sum 3.318 2.748 3.397 5.487 Atomic orbital electron populations 1.86613 1.18221 1.80430 1.50085 1.24749 0.83288 1.11532 0.96278 0.94384 0.90453 0.72005 0.80064 1.24829 1.09610 0.98098 1.03670 1.20995 0.98890 0.95063 0.95617 1.20100 1.08037 0.93932 0.98061 1.17961 0.77784 0.87385 0.80992 1.90791 1.45629 1.51272 1.59147 1.45744 1.56825 1.12681 1.21121 1.21380 1.00868 0.82184 0.95742 1.21669 1.01666 0.96782 0.94439 1.22217 0.96515 0.97247 0.96058 0.88033 1.23126 0.97210 1.00299 0.95717 1.23504 0.96714 0.98589 0.80388 0.89037 1.86483 1.57679 1.69064 1.25924 1.23756 0.97289 1.01231 0.98076 1.26187 1.02910 0.97883 1.05825 1.82988 1.48450 1.07607 1.09121 0.76231 0.85365 1.20269 1.17364 0.85054 0.74745 0.92604 0.92113 0.89440 0.90347 0.90177 0.89680 0.75743 0.89822 0.91031 0.77818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.73 12.88 -148.98 -1.92 -3.65 16 2 C -0.05 0.02 2.94 71.24 0.21 0.23 16 3 Si 0.73 -2.62 30.92 68.60 2.12 -0.50 16 4 C -0.25 -0.02 5.65 24.51 0.14 0.12 16 5 C -0.08 -0.39 9.95 22.67 0.23 -0.17 16 6 C -0.18 -0.56 5.98 -19.87 -0.12 -0.68 16 7 C 0.57 4.14 7.79 86.59 0.67 4.82 16 8 O -0.59 -9.98 16.80 -4.13 -0.07 -10.05 16 9 N -0.71 0.41 5.52 -466.62 -2.58 -2.17 16 10 C 0.12 -0.06 5.66 86.38 0.49 0.43 16 11 C -0.11 0.60 5.17 30.59 0.16 0.76 16 12 C -0.10 0.42 3.65 -10.27 -0.04 0.39 16 13 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 14 C -0.13 0.31 7.47 31.12 0.23 0.55 16 15 C 0.07 -0.10 5.21 31.12 0.16 0.06 16 16 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 17 O -0.58 -0.88 13.67 -148.98 -2.04 -2.92 16 18 C -0.17 0.40 7.46 31.12 0.23 0.64 16 19 C -0.19 0.88 10.38 67.30 0.70 1.58 16 20 S 0.25 -1.35 20.20 -56.49 -1.14 -2.49 16 21 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 22 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 23 H -0.28 -0.98 7.11 99.48 0.71 -0.27 16 24 H -0.25 0.46 7.11 99.48 0.71 1.16 16 25 H 0.13 1.22 8.06 -2.91 -0.02 1.19 16 26 H 0.41 -3.21 6.97 -92.71 -0.65 -3.86 16 27 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 30 H 0.08 -0.48 7.84 -2.38 -0.02 -0.50 16 31 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.08 -0.10 8.10 -2.38 -0.02 -0.11 16 33 H 0.39 -2.43 9.12 -74.06 -0.68 -3.10 16 34 H 0.08 -0.08 7.89 -2.39 -0.02 -0.10 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.20 -2.50 7.01 -2.91 -0.02 -2.52 16 Total: 0.00 -21.71 320.17 -3.37 -25.07 By element: Atomic # 1 Polarization: -11.20 SS G_CDS: -0.81 Total: -12.01 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 3.07 Total: 8.73 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -2.58 Total: -2.17 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -4.03 Total: -16.62 kcal Atomic # 14 Polarization: -2.62 SS G_CDS: 2.12 Total: -0.50 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.14 Total: -2.49 kcal Total: -21.71 -3.37 -25.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17837616_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.471 kcal (2) G-P(sol) polarization free energy of solvation -21.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds