Wall clock time and date at job start Tue Mar 9 2021 13:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35985 * 116.99890 * 2 1 4 4 C 1.38675 * 119.99953 * 180.02562 * 3 2 1 5 5 C 1.38149 * 120.00131 * 180.02562 * 4 3 2 6 6 C 1.50702 * 120.00125 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.47127 * 255.02117 * 6 5 4 8 8 Si 1.86300 * 109.47189 * 15.01779 * 6 5 4 9 9 C 1.38673 * 119.99889 * 359.97438 * 5 4 3 10 10 O 1.35978 * 120.00016 * 180.02562 * 9 5 4 11 11 C 1.42903 * 117.00089 * 179.97438 * 10 9 5 12 12 C 1.50703 * 109.47143 * 180.02562 * 11 10 9 13 13 O 1.21285 * 120.00065 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99882 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99880 * 179.97438 * 14 12 11 16 16 C 1.53009 * 109.46520 * 154.99891 * 15 14 12 17 17 C 1.53082 * 109.42359 * 180.48233 * 16 15 14 18 18 C 1.52464 * 109.58404 * 300.86204 * 17 16 15 19 19 C 1.52473 * 110.75362 * 58.57036 * 18 17 16 20 20 C 1.53015 * 109.46622 * 275.03759 * 15 14 12 21 21 N 1.46863 * 110.48644 * 181.32678 * 18 17 16 22 22 C 1.34668 * 106.42728 * 118.54396 * 21 18 17 23 23 O 1.21543 * 123.78851 * 180.02562 * 22 21 18 24 24 N 1.33864 * 112.41977 * 0.26758 * 22 21 18 25 25 C 1.46503 * 124.19279 * 179.73157 * 24 22 21 26 26 C 1.34916 * 111.61262 * 359.53841 * 24 22 21 27 27 O 1.21232 * 127.25588 * 180.17310 * 26 24 22 28 28 C 1.38718 * 119.99890 * 0.27658 * 9 5 4 29 29 C 1.38112 * 119.99810 * 359.44692 * 28 9 5 30 30 H 1.09004 * 109.47209 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47044 * 300.00215 * 1 2 3 32 32 H 1.08995 * 109.46935 * 60.00264 * 1 2 3 33 33 H 1.08007 * 119.99994 * 0.03836 * 4 3 2 34 34 H 1.09001 * 109.47572 * 135.02226 * 6 5 4 35 35 H 0.96699 * 113.99665 * 300.00164 * 7 6 5 36 36 H 1.48501 * 110.00235 * 298.68429 * 8 6 5 37 37 H 1.48497 * 109.99795 * 60.00292 * 8 6 5 38 38 H 1.08996 * 109.46788 * 60.00551 * 11 10 9 39 39 H 1.08999 * 109.47665 * 300.00128 * 11 10 9 40 40 H 0.96994 * 120.00019 * 0.02562 * 14 12 11 41 41 H 1.09006 * 109.45949 * 35.01988 * 15 14 12 42 42 H 1.09003 * 109.47509 * 60.49946 * 16 15 14 43 43 H 1.09000 * 109.47793 * 300.47031 * 16 15 14 44 44 H 1.09000 * 109.44637 * 180.82955 * 17 16 15 45 45 H 1.08995 * 109.44807 * 60.89473 * 17 16 15 46 46 H 1.08992 * 109.45158 * 61.45910 * 19 18 17 47 47 H 1.08998 * 109.45308 * 181.39497 * 19 18 17 48 48 H 1.09000 * 109.47756 * 299.49265 * 20 15 14 49 49 H 1.08994 * 109.47734 * 59.53439 * 20 15 14 50 50 H 0.97002 * 126.77971 * 298.57137 * 21 18 17 51 51 H 1.08994 * 109.47511 * 0.02959 * 25 24 22 52 52 H 1.09004 * 109.46960 * 120.02915 * 25 24 22 53 53 H 1.08998 * 109.47424 * 240.02515 * 25 24 22 54 54 H 1.08000 * 119.99849 * 179.70548 * 28 9 5 55 55 H 1.08004 * 119.99328 * 180.25413 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4312 1.2842 -0.0005 5 6 4.0584 2.5151 0.0000 6 6 5.5633 2.5940 0.0000 7 8 6.0208 2.9661 1.3017 8 14 6.2723 0.9326 -0.4559 9 6 3.3031 3.6782 0.0005 10 8 3.9204 4.8897 0.0005 11 6 3.0805 6.0459 0.0005 12 6 3.9347 7.2874 -0.0001 13 8 5.1437 7.1917 -0.0010 14 7 3.3550 8.5042 0.0003 15 6 4.1854 9.7111 0.0003 16 6 3.3971 10.8724 -0.6090 17 6 4.2698 12.1300 -0.6196 18 6 4.6910 12.4718 0.8053 19 6 5.4569 11.3134 1.4349 20 6 4.5793 10.0591 1.4373 21 7 5.5040 13.6947 0.8216 22 6 4.8296 14.5905 1.5674 23 8 5.2230 15.7191 1.7881 24 7 3.6797 14.0967 2.0426 25 6 2.7481 14.8475 2.8880 26 6 3.4830 12.8231 1.6430 27 8 2.5388 12.1093 1.9049 28 6 1.9178 3.6055 0.0063 29 6 1.2908 2.3749 0.0000 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0194 0.3784 -0.0016 34 1 5.8882 3.3393 -0.7260 35 1 5.6901 3.8228 1.6047 36 1 5.8629 -0.0861 0.5441 37 1 5.8040 0.5343 -1.8076 38 1 2.4513 6.0378 0.8905 39 1 2.4511 6.0379 -0.8894 40 1 2.3881 8.5808 0.0014 41 1 5.0845 9.5333 -0.5899 42 1 2.5023 11.0558 -0.0141 43 1 3.1098 10.6206 -1.6299 44 1 3.7035 12.9611 -1.0400 45 1 5.1567 11.9511 -1.2273 46 1 6.3625 11.1217 0.8594 47 1 5.7258 11.5702 2.4595 48 1 3.6807 10.2454 2.0255 49 1 5.1338 9.2283 1.8735 50 1 6.3579 13.8304 0.3817 51 1 3.1400 15.8501 3.0591 52 1 1.7805 14.9156 2.3908 53 1 2.6306 14.3355 3.8430 54 1 1.3296 4.5113 0.0116 55 1 0.2123 2.3185 0.0004 There are 78 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 78 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17849352_4974302.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:47 Heat of formation + Delta-G solvation = -144.364919 kcal Electronic energy + Delta-G solvation = -41262.505712 eV Core-core repulsion = 35847.181280 eV Total energy + Delta-G solvation = -5415.324432 eV No. of doubly occupied orbitals = 78 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.187 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.86006 -41.91231 -41.08570 -40.23335 -39.82593 -38.77229 -38.11522 -37.24950 -36.97973 -35.97775 -34.18154 -32.92031 -32.12107 -31.30522 -30.31195 -29.07823 -28.62669 -28.00334 -26.63334 -25.17386 -24.14076 -23.93055 -23.07494 -22.50494 -22.47427 -21.54106 -20.60085 -19.61631 -19.15777 -18.89061 -18.59687 -18.11021 -18.04554 -17.64976 -17.49306 -17.41773 -17.17847 -16.74814 -16.66626 -16.55417 -16.12185 -15.98158 -15.84411 -15.70860 -15.55416 -15.32818 -15.16213 -14.97777 -14.71866 -14.31177 -14.24354 -14.14842 -13.97148 -13.83652 -13.70862 -13.62016 -13.53813 -13.48615 -13.40214 -13.10597 -12.86444 -12.59145 -12.35916 -12.29420 -12.22533 -12.21168 -11.96980 -11.81476 -11.53823 -11.28374 -11.11269 -10.95130 -10.92983 -10.89728 -10.51298 -10.24216 -10.14117 -8.93567 -4.86523 -0.07186 0.21283 0.45386 1.13126 1.32479 1.43745 1.48521 1.59686 1.83322 1.90560 2.02500 2.22389 2.42412 2.54156 2.78678 3.33634 3.40680 3.43177 3.50215 3.64419 3.73584 3.83707 3.91225 3.93914 3.96575 3.98980 4.04213 4.09378 4.12377 4.13243 4.18415 4.27757 4.32819 4.33875 4.35666 4.37644 4.42502 4.48265 4.54903 4.56643 4.58827 4.67347 4.71726 4.80396 4.87810 4.89815 4.99195 5.00771 5.03989 5.07489 5.16336 5.21283 5.29067 5.44779 5.73070 5.89994 6.06510 6.27575 6.30536 6.47562 6.55340 6.99391 7.14865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.087 3.913 4 C -0.142 4.142 5 C -0.118 4.118 6 C -0.083 4.083 7 O -0.544 6.544 8 Si 0.811 3.189 9 C 0.099 3.901 10 O -0.308 6.308 11 C 0.033 3.967 12 C 0.517 3.483 13 O -0.561 6.561 14 N -0.707 5.707 15 C 0.152 3.848 16 C -0.126 4.126 17 C -0.106 4.106 18 C 0.128 3.872 19 C -0.106 4.106 20 C -0.132 4.132 21 N -0.702 5.702 22 C 0.698 3.302 23 O -0.581 6.581 24 N -0.584 5.584 25 C 0.078 3.922 26 C 0.529 3.471 27 O -0.469 6.469 28 C -0.155 4.155 29 C -0.159 4.159 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.372 0.628 36 H -0.288 1.288 37 H -0.267 1.267 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.418 0.582 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.452 0.548 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.087 0.913 54 H 0.174 0.826 55 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 2.125 -3.404 7.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.042 3.958 4 C -0.161 4.161 5 C -0.119 4.119 6 C -0.191 4.191 7 O -0.351 6.351 8 Si 0.712 3.288 9 C 0.053 3.947 10 O -0.221 6.221 11 C -0.045 4.045 12 C 0.303 3.697 13 O -0.439 6.439 14 N -0.360 5.360 15 C 0.048 3.952 16 C -0.164 4.164 17 C -0.145 4.145 18 C 0.037 3.963 19 C -0.145 4.145 20 C -0.171 4.171 21 N -0.366 5.366 22 C 0.399 3.601 23 O -0.457 6.457 24 N -0.331 5.331 25 C -0.062 4.062 26 C 0.317 3.683 27 O -0.339 6.339 28 C -0.173 4.173 29 C -0.178 4.178 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.221 0.779 36 H -0.216 1.216 37 H -0.193 1.193 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.299 0.701 51 H 0.112 0.888 52 H 0.109 0.891 53 H 0.105 0.895 54 H 0.191 0.809 55 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.727 0.804 -3.335 6.676 hybrid contribution -1.764 1.323 0.403 2.242 sum -7.491 2.128 -2.932 8.321 Atomic orbital electron populations 1.23385 0.75997 1.05711 1.02613 1.86079 1.23844 1.26693 1.89030 1.18990 0.91733 0.85610 0.99434 1.20161 0.92836 0.96928 1.06153 1.19555 0.96878 0.90534 1.04966 1.25352 0.91026 1.14133 0.88609 1.86657 1.73880 1.42349 1.32171 0.92528 0.89973 0.69917 0.76335 1.18677 0.91487 0.84370 1.00126 1.86088 1.35247 1.11561 1.89198 1.22771 0.92883 0.82063 1.06740 1.20355 0.88349 0.85189 0.75851 1.90771 1.16175 1.87224 1.49710 1.45727 1.11434 1.04118 1.74757 1.20958 0.94679 0.83594 0.96010 1.21867 0.98985 0.92323 1.03260 1.21648 1.02678 0.98744 0.91429 1.21213 0.89152 0.87292 0.98641 1.21601 0.99230 0.91544 1.02086 1.21966 1.00520 0.96832 0.97779 1.45556 1.24940 1.11990 1.54149 1.16101 0.80557 0.84415 0.79033 1.91020 1.71407 1.19132 1.64155 1.46460 1.21998 1.15835 1.48778 1.22036 0.92254 0.97482 0.94440 1.20955 0.87649 0.80584 0.79119 1.90746 1.33062 1.54029 1.56081 1.21465 0.92240 0.99962 1.03663 1.21427 1.01653 0.90736 1.03958 0.86751 0.91262 0.91129 0.85907 0.90143 0.77940 1.21574 1.19284 0.86020 0.85872 0.74437 0.89731 0.89910 0.88372 0.89633 0.87101 0.87568 0.90846 0.90520 0.91809 0.70075 0.88826 0.89124 0.89464 0.80890 0.81785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -2.13 10.50 -93.38 -0.98 -3.11 16 3 C 0.09 0.56 6.68 22.49 0.15 0.71 16 4 C -0.14 -1.35 8.59 22.35 0.19 -1.16 16 5 C -0.12 -0.93 5.27 -19.78 -0.10 -1.04 16 6 C -0.08 -0.61 2.33 71.24 0.17 -0.44 16 7 O -0.54 -4.90 12.65 -148.98 -1.89 -6.79 16 8 Si 0.81 4.19 30.40 68.60 2.09 6.27 16 9 C 0.10 0.35 6.62 22.49 0.15 0.50 16 10 O -0.31 -0.87 8.56 -74.27 -0.64 -1.50 16 11 C 0.03 -0.19 5.22 71.24 0.37 0.18 16 12 C 0.52 -0.63 7.87 87.66 0.69 0.06 16 13 O -0.56 -4.96 16.16 15.99 0.26 -4.70 16 14 N -0.71 5.12 5.08 -442.48 -2.25 2.88 16 15 C 0.15 -0.93 2.44 45.00 0.11 -0.82 16 16 C -0.13 1.19 5.14 30.62 0.16 1.35 16 17 C -0.11 1.02 5.10 30.44 0.16 1.18 16 18 C 0.13 -0.76 1.01 2.58 0.00 -0.76 16 19 C -0.11 0.64 5.10 30.45 0.16 0.79 16 20 C -0.13 0.51 5.25 30.63 0.16 0.67 16 21 N -0.70 3.31 5.88 -442.69 -2.60 0.71 16 22 C 0.70 1.88 8.63 179.37 1.55 3.42 16 23 O -0.58 -6.28 17.24 -3.85 -0.07 -6.35 16 24 N -0.58 -0.16 3.01 -796.76 -2.40 -2.56 16 25 C 0.08 -0.20 10.89 127.77 1.39 1.19 16 26 C 0.53 -0.70 6.53 87.78 0.57 -0.12 16 27 O -0.47 -0.62 13.94 -2.88 -0.04 -0.66 16 28 C -0.16 0.29 9.03 22.35 0.20 0.49 16 29 C -0.16 0.02 9.03 22.35 0.20 0.22 16 30 H 0.11 -0.70 8.14 -2.38 -0.02 -0.72 16 31 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 32 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 33 H 0.12 1.36 4.93 -2.91 -0.01 1.35 16 34 H 0.08 0.53 7.82 -2.39 -0.02 0.51 16 35 H 0.37 2.30 8.60 -74.06 -0.64 1.67 16 36 H -0.29 -3.16 6.81 99.48 0.68 -2.49 16 37 H -0.27 -2.05 7.11 99.48 0.71 -1.34 16 38 H 0.12 -1.39 7.65 -2.39 -0.02 -1.41 16 39 H 0.12 -1.46 7.67 -2.39 -0.02 -1.48 16 40 H 0.42 -5.52 8.60 -92.71 -0.80 -6.32 16 41 H 0.08 -0.29 7.58 -2.38 -0.02 -0.31 16 42 H 0.08 -0.61 6.11 -2.39 -0.01 -0.63 16 43 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 45 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 46 H 0.11 -0.91 8.14 -2.39 -0.02 -0.93 16 47 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.08 -0.15 6.11 -2.39 -0.01 -0.16 16 49 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 50 H 0.45 -4.00 8.96 -92.71 -0.83 -4.83 16 51 H 0.09 -0.13 7.45 -2.39 -0.02 -0.15 16 52 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 53 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 54 H 0.17 -1.78 6.29 -2.91 -0.02 -1.80 16 55 H 0.16 -1.06 6.29 -2.91 -0.02 -1.08 16 Total: 0.00 -31.64 440.57 -2.39 -34.03 By element: Atomic # 1 Polarization: -24.42 SS G_CDS: -1.26 Total: -25.68 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 7.38 Total: 7.47 kcal Atomic # 7 Polarization: 8.27 SS G_CDS: -7.25 Total: 1.02 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -3.35 Total: -23.12 kcal Atomic # 14 Polarization: 4.19 SS G_CDS: 2.09 Total: 6.27 kcal Total: -31.64 -2.39 -34.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17849352_4974302.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.330 kcal (2) G-P(sol) polarization free energy of solvation -31.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds