Wall clock time and date at job start Tue Mar 9 2021 13:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 349.23448 * 3 2 1 5 5 C 1.52997 * 109.47080 * 109.23425 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 9 9 C 1.52996 * 109.47346 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47278 * 64.99726 * 9 7 6 11 11 C 1.34777 * 120.00574 * 180.02562 * 10 9 7 12 12 O 1.21557 * 119.99328 * 0.02562 * 11 10 9 13 13 C 1.47839 * 120.00345 * 180.02562 * 11 10 9 14 14 C 1.39519 * 120.55775 * 359.71910 * 13 11 10 15 15 N 1.31699 * 120.56171 * 179.72182 * 14 13 11 16 16 C 1.31923 * 121.88044 * 0.55031 * 15 14 13 17 17 C 1.38354 * 121.08164 * 359.74236 * 16 15 14 18 18 C 1.50696 * 120.34906 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47328 * 244.97841 * 18 17 16 20 20 Si 1.86305 * 109.47293 * 4.97921 * 18 17 16 21 21 C 1.38352 * 119.29889 * 359.97438 * 17 16 15 22 22 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 23 23 C 1.52999 * 109.46670 * 229.23698 * 3 2 1 24 24 H 4.18746 * 15.04017 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.47140 * 60.00053 * 5 3 2 26 26 H 1.09001 * 109.47375 * 300.00036 * 5 3 2 27 27 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 29 29 H 1.08998 * 109.47622 * 184.99440 * 9 7 6 30 30 H 1.09001 * 109.47244 * 305.00138 * 9 7 6 31 31 H 0.97001 * 120.00036 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.71659 * 0.02562 * 14 13 11 33 33 H 1.08003 * 119.45858 * 179.71500 * 16 15 14 34 34 H 1.09004 * 109.47153 * 124.97285 * 18 17 16 35 35 H 0.96702 * 114.00070 * 59.99873 * 19 18 17 36 36 H 1.48502 * 110.00018 * 58.67791 * 20 18 17 37 37 H 1.48493 * 110.00059 * 179.97438 * 20 18 17 38 38 H 1.08007 * 120.85539 * 179.97438 * 21 17 16 39 39 H 1.09001 * 109.46922 * 180.02562 * 22 7 6 40 40 H 1.09000 * 109.47140 * 59.99976 * 22 7 6 41 41 H 1.08993 * 109.47839 * 60.00146 * 23 3 2 42 42 H 1.09000 * 109.47160 * 299.99708 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0099 -1.0088 0.1920 5 6 3.1558 0.4761 -1.3620 6 6 4.6858 0.4762 -1.3622 7 6 5.1959 1.4179 -0.2695 8 1 4.8325 2.4275 -0.4613 9 6 6.7259 1.4176 -0.2693 10 7 7.2146 1.9844 -1.5287 11 6 8.5397 2.0848 -1.7533 12 8 9.3293 1.7045 -0.9110 13 6 9.0328 2.6573 -3.0240 14 6 8.1368 3.0920 -4.0011 15 7 8.5760 3.6071 -5.1308 16 6 9.8644 3.7231 -5.3893 17 6 10.8165 3.3099 -4.4744 18 6 12.2840 3.4497 -4.7870 19 8 12.8766 2.1528 -4.8817 20 14 12.4914 4.3469 -6.4066 21 6 10.4070 2.7671 -3.2695 22 6 4.6861 0.9425 1.0924 23 6 3.1555 0.9428 1.0926 24 1 -1.0500 -0.0011 -0.0003 25 1 2.7921 1.4855 -1.5539 26 1 2.7928 -0.1951 -2.1403 27 1 5.0490 0.8153 -2.3322 28 1 5.0492 -0.5334 -1.1704 29 1 7.0893 2.0181 0.5646 30 1 7.0890 0.3950 -0.1660 31 1 6.5844 2.2875 -2.2009 32 1 7.0740 3.0099 -3.8275 33 1 10.1812 4.1473 -6.3307 34 1 12.7723 4.0153 -3.9933 35 1 12.4904 1.5932 -5.5693 36 1 11.8515 5.6849 -6.3315 37 1 13.9343 4.4918 -6.7259 38 1 11.1286 2.4360 -2.5374 39 1 5.0492 1.6137 1.8707 40 1 5.0495 -0.0671 1.2842 41 1 2.7924 0.6041 2.0629 42 1 2.7918 1.9522 0.9006 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_17850112_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:16 Heat of formation + Delta-G solvation = 8.674653 kcal Electronic energy + Delta-G solvation = -23450.768991 eV Core-core repulsion = 19977.074530 eV Total energy + Delta-G solvation = -3473.694461 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93109 -40.65695 -39.73515 -37.99318 -36.43412 -34.39893 -33.78650 -33.15969 -31.95101 -31.37041 -27.56884 -27.30074 -25.28358 -23.97188 -23.77120 -22.86161 -21.65042 -20.97139 -19.28957 -19.07817 -18.23938 -17.97100 -17.71769 -16.77898 -16.60597 -16.39164 -16.24008 -15.77096 -15.64501 -15.34321 -15.20735 -14.88845 -14.61071 -14.39842 -14.23764 -13.98851 -13.74127 -13.54687 -13.34937 -13.25267 -12.77298 -12.53212 -12.26013 -12.16900 -11.79090 -11.72535 -11.61239 -11.32890 -11.06600 -10.97306 -10.87249 -10.64526 -10.58659 -10.39440 -10.15735 -5.17471 -0.60281 -0.05045 1.10688 1.50461 1.71265 1.84848 1.90520 1.93629 1.96565 2.61368 2.98585 3.24738 3.28161 3.36330 3.53509 3.56400 3.58121 3.63845 3.69447 3.71638 4.01348 4.06797 4.13279 4.14536 4.26542 4.29016 4.30481 4.37663 4.39802 4.54144 4.61229 4.69809 4.80822 4.81775 4.88721 4.93682 5.00745 5.02923 5.07277 5.18147 5.19604 5.23245 5.29469 5.36019 6.29533 6.41444 6.59128 6.71963 7.04891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.020 3.980 4 H 0.092 0.908 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.102 4.102 8 H 0.081 0.919 9 C 0.123 3.877 10 N -0.724 5.724 11 C 0.564 3.436 12 O -0.528 6.528 13 C -0.188 4.188 14 C 0.139 3.861 15 N -0.477 5.477 16 C 0.129 3.871 17 C -0.179 4.179 18 C -0.064 4.064 19 O -0.536 6.536 20 Si 0.687 3.313 21 C 0.011 3.989 22 C -0.112 4.112 23 C -0.109 4.109 24 H 0.217 0.783 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.400 0.600 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.120 0.880 35 H 0.380 0.620 36 H -0.253 1.253 37 H -0.248 1.248 38 H 0.152 0.848 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.239 -0.283 -2.784 4.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.002 3.998 4 H 0.110 0.890 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.121 4.121 8 H 0.099 0.901 9 C 0.000 4.000 10 N -0.376 5.376 11 C 0.350 3.650 12 O -0.405 6.405 13 C -0.193 4.193 14 C -0.020 4.020 15 N -0.185 5.185 16 C -0.027 4.027 17 C -0.181 4.181 18 C -0.176 4.176 19 O -0.341 6.341 20 Si 0.588 3.412 21 C -0.015 4.015 22 C -0.150 4.150 23 C -0.147 4.147 24 H 0.233 0.767 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.236 0.764 32 H 0.178 0.822 33 H 0.180 0.820 34 H 0.137 0.863 35 H 0.228 0.772 36 H -0.177 1.177 37 H -0.173 1.173 38 H 0.170 0.830 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.581 0.663 -2.696 3.791 hybrid contribution -0.139 -0.113 0.976 0.993 sum -2.720 0.550 -1.720 3.265 Atomic orbital electron populations 1.24987 0.96024 1.00805 1.00380 1.23060 0.94306 1.00556 1.00704 1.18354 0.84331 1.00761 0.96339 0.88995 1.21549 0.95196 1.02183 0.95853 1.21640 0.95138 1.00223 0.98341 1.21471 0.93396 1.00643 0.96542 0.90089 1.21498 0.93388 0.99572 0.85575 1.45909 1.06587 1.64432 1.20706 1.17995 0.82451 0.78491 0.86106 1.90829 1.55281 1.48382 1.45988 1.21044 0.95413 1.05960 0.96866 1.23023 0.99867 0.91068 0.87997 1.67716 1.16644 1.13852 1.20269 1.22873 0.88190 0.93612 0.98030 1.21436 0.98067 1.02626 0.96015 1.25032 0.89338 0.91556 1.11644 1.86552 1.61574 1.25070 1.60887 0.94879 0.83094 0.81908 0.81363 1.21641 0.94632 0.89832 0.95383 1.21521 0.95118 1.02367 0.95950 1.21549 0.95113 0.99740 0.98290 0.76651 0.91347 0.91253 0.91545 0.91114 0.90905 0.90830 0.76419 0.82221 0.82012 0.86291 0.77205 1.17740 1.17272 0.83027 0.90947 0.91066 0.91157 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.16 19.25 29.55 0.57 0.41 16 2 C -0.19 -0.21 12.56 -37.12 -0.47 -0.68 16 3 C 0.02 -0.02 2.56 -93.41 -0.24 -0.26 16 4 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 5 C -0.11 0.23 5.16 -26.73 -0.14 0.10 16 6 C -0.12 0.37 5.08 -26.73 -0.14 0.24 16 7 C -0.10 0.32 2.23 -90.62 -0.20 0.12 16 8 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 9 C 0.12 -0.19 5.06 -4.04 -0.02 -0.21 16 10 N -0.72 1.07 5.24 -61.25 -0.32 0.75 16 11 C 0.56 0.93 7.78 -12.33 -0.10 0.83 16 12 O -0.53 -2.97 16.42 5.32 0.09 -2.88 16 13 C -0.19 -0.10 5.89 -104.82 -0.62 -0.72 16 14 C 0.14 -0.11 10.71 -17.13 -0.18 -0.30 16 15 N -0.48 -0.20 10.35 -12.91 -0.13 -0.34 16 16 C 0.13 -0.10 9.84 -17.47 -0.17 -0.27 16 17 C -0.18 0.09 5.35 -104.54 -0.56 -0.47 16 18 C -0.06 0.08 2.82 36.00 0.10 0.18 16 19 O -0.54 0.27 12.84 -35.23 -0.45 -0.19 16 20 Si 0.69 -1.54 29.83 -169.99 -5.07 -6.61 16 21 C 0.01 0.01 9.38 -38.87 -0.36 -0.35 16 22 C -0.11 0.31 5.20 -26.70 -0.14 0.17 16 23 C -0.11 0.20 5.16 -26.70 -0.14 0.06 16 24 H 0.22 -0.44 7.80 -54.09 -0.42 -0.86 16 25 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 26 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.07 -0.26 7.18 -51.93 -0.37 -0.64 16 28 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 29 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 30 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.40 -1.62 5.72 -40.82 -0.23 -1.85 16 32 H 0.16 -0.64 6.42 -52.49 -0.34 -0.97 16 33 H 0.16 -0.51 4.91 -52.48 -0.26 -0.77 16 34 H 0.12 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.38 -1.70 8.70 45.56 0.40 -1.31 16 36 H -0.25 0.00 7.11 56.52 0.40 0.40 16 37 H -0.25 -0.28 7.11 56.52 0.40 0.13 16 38 H 0.15 0.26 7.74 -52.48 -0.41 -0.15 16 39 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 40 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 41 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 42 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 LS Contribution 348.92 15.07 5.26 5.26 Total: 0.00 -8.56 348.92 -9.33 -17.88 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: -5.89 Total: -12.72 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -2.80 Total: -1.15 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -0.45 Total: 0.41 kcal Atomic # 8 Polarization: -2.70 SS G_CDS: -0.37 Total: -3.07 kcal Atomic # 14 Polarization: -1.54 SS G_CDS: -5.07 Total: -6.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -8.56 -9.33 -17.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.557 kcal (2) G-P(sol) polarization free energy of solvation -8.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds