Wall clock time and date at job start Tue Mar 9 2021 13:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 349.23448 * 3 2 1 5 5 C 1.52997 * 109.47080 * 109.23425 * 3 2 1 6 6 C 1.52996 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46972 * 300.00293 * 6 5 3 8 8 H 1.09000 * 109.46986 * 299.99742 * 7 6 5 9 9 C 1.52996 * 109.47346 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47278 * 64.99726 * 9 7 6 11 11 C 1.34777 * 120.00574 * 180.02562 * 10 9 7 12 12 O 1.21557 * 119.99328 * 0.02562 * 11 10 9 13 13 C 1.47839 * 120.00345 * 180.02562 * 11 10 9 14 14 C 1.39519 * 120.55775 * 359.71910 * 13 11 10 15 15 N 1.31699 * 120.56171 * 179.72182 * 14 13 11 16 16 C 1.31923 * 121.88044 * 0.55031 * 15 14 13 17 17 C 1.38354 * 121.08164 * 359.74236 * 16 15 14 18 18 C 1.50696 * 120.34906 * 179.97438 * 17 16 15 19 19 O 1.42899 * 109.47328 * 244.97841 * 18 17 16 20 20 Si 1.86305 * 109.47293 * 4.97921 * 18 17 16 21 21 C 1.38352 * 119.29889 * 359.97438 * 17 16 15 22 22 C 1.52997 * 109.47415 * 59.99860 * 7 6 5 23 23 C 1.52999 * 109.46670 * 229.23698 * 3 2 1 24 24 H 4.18746 * 15.04017 * 0.02562 * 4 2 1 25 25 H 1.09000 * 109.47140 * 60.00053 * 5 3 2 26 26 H 1.09001 * 109.47375 * 300.00036 * 5 3 2 27 27 H 1.08992 * 109.47534 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47134 * 59.99508 * 6 5 3 29 29 H 1.08998 * 109.47622 * 184.99440 * 9 7 6 30 30 H 1.09001 * 109.47244 * 305.00138 * 9 7 6 31 31 H 0.97001 * 120.00036 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.71659 * 0.02562 * 14 13 11 33 33 H 1.08003 * 119.45858 * 179.71500 * 16 15 14 34 34 H 1.09004 * 109.47153 * 124.97285 * 18 17 16 35 35 H 0.96702 * 114.00070 * 59.99873 * 19 18 17 36 36 H 1.48502 * 110.00018 * 58.67791 * 20 18 17 37 37 H 1.48493 * 110.00059 * 179.97438 * 20 18 17 38 38 H 1.08007 * 120.85539 * 179.97438 * 21 17 16 39 39 H 1.09001 * 109.46922 * 180.02562 * 22 7 6 40 40 H 1.09000 * 109.47140 * 59.99976 * 22 7 6 41 41 H 1.08993 * 109.47839 * 60.00146 * 23 3 2 42 42 H 1.09000 * 109.47160 * 299.99708 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0099 -1.0088 0.1920 5 6 3.1558 0.4761 -1.3620 6 6 4.6858 0.4762 -1.3622 7 6 5.1959 1.4179 -0.2695 8 1 4.8325 2.4275 -0.4613 9 6 6.7259 1.4176 -0.2693 10 7 7.2146 1.9844 -1.5287 11 6 8.5397 2.0848 -1.7533 12 8 9.3293 1.7045 -0.9110 13 6 9.0328 2.6573 -3.0240 14 6 8.1368 3.0920 -4.0011 15 7 8.5760 3.6071 -5.1308 16 6 9.8644 3.7231 -5.3893 17 6 10.8165 3.3099 -4.4744 18 6 12.2840 3.4497 -4.7870 19 8 12.8766 2.1528 -4.8817 20 14 12.4914 4.3469 -6.4066 21 6 10.4070 2.7671 -3.2695 22 6 4.6861 0.9425 1.0924 23 6 3.1555 0.9428 1.0926 24 1 -1.0500 -0.0011 -0.0003 25 1 2.7921 1.4855 -1.5539 26 1 2.7928 -0.1951 -2.1403 27 1 5.0490 0.8153 -2.3322 28 1 5.0492 -0.5334 -1.1704 29 1 7.0893 2.0181 0.5646 30 1 7.0890 0.3950 -0.1660 31 1 6.5844 2.2875 -2.2009 32 1 7.0740 3.0099 -3.8275 33 1 10.1812 4.1473 -6.3307 34 1 12.7723 4.0153 -3.9933 35 1 12.4904 1.5932 -5.5693 36 1 11.8515 5.6849 -6.3315 37 1 13.9343 4.4918 -6.7259 38 1 11.1286 2.4360 -2.5374 39 1 5.0492 1.6137 1.8707 40 1 5.0495 -0.0671 1.2842 41 1 2.7924 0.6041 2.0629 42 1 2.7918 1.9522 0.9006 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_13287814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:04:15 Heat of formation + Delta-G solvation = 9.817322 kcal Electronic energy + Delta-G solvation = -23450.719442 eV Core-core repulsion = 19977.074530 eV Total energy + Delta-G solvation = -3473.644912 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92922 -40.61093 -39.70816 -37.93089 -36.44824 -34.39106 -33.77686 -33.12792 -31.77323 -31.30791 -27.51157 -27.24004 -25.24649 -23.90477 -23.63502 -22.75725 -21.66118 -20.81303 -19.26161 -19.01383 -18.18599 -17.92036 -17.69260 -16.75607 -16.60255 -16.33004 -16.18478 -15.73115 -15.57940 -15.20657 -15.10679 -14.85617 -14.58219 -14.38423 -14.23069 -13.91145 -13.64119 -13.48211 -13.21625 -13.11406 -12.72281 -12.42421 -12.19029 -12.07400 -11.74979 -11.55477 -11.51274 -11.38531 -11.09210 -10.92549 -10.77752 -10.60360 -10.58121 -10.37663 -10.12790 -5.02704 -0.58074 -0.04261 1.22541 1.61973 1.65278 1.87893 1.90417 1.92890 2.00435 2.62581 3.10502 3.35370 3.38090 3.45477 3.65187 3.70585 3.72662 3.72979 3.77803 3.81246 4.09823 4.14774 4.24740 4.29463 4.38938 4.46271 4.47100 4.47460 4.55625 4.67885 4.73350 4.82138 4.85641 4.93854 4.95519 5.13100 5.14760 5.21046 5.22882 5.26959 5.30584 5.33318 5.38904 5.53471 6.34611 6.63475 6.70448 6.70836 7.02414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.208 4.208 3 C 0.016 3.984 4 H 0.093 0.907 5 C -0.105 4.105 6 C -0.112 4.112 7 C -0.090 4.090 8 H 0.090 0.910 9 C 0.125 3.875 10 N -0.706 5.706 11 C 0.562 3.438 12 O -0.577 6.577 13 C -0.197 4.197 14 C 0.147 3.853 15 N -0.492 5.492 16 C 0.131 3.869 17 C -0.177 4.177 18 C -0.074 4.074 19 O -0.554 6.554 20 Si 0.785 3.215 21 C -0.004 4.004 22 C -0.110 4.110 23 C -0.105 4.105 24 H 0.236 0.764 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.415 0.585 32 H 0.192 0.808 33 H 0.186 0.814 34 H 0.110 0.890 35 H 0.397 0.603 36 H -0.277 1.277 37 H -0.295 1.295 38 H 0.135 0.865 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 0.084 -3.997 5.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.208 4.208 3 C -0.002 4.002 4 H 0.111 0.889 5 C -0.143 4.143 6 C -0.150 4.150 7 C -0.109 4.109 8 H 0.108 0.892 9 C 0.001 3.999 10 N -0.359 5.359 11 C 0.349 3.651 12 O -0.458 6.458 13 C -0.202 4.202 14 C -0.011 4.011 15 N -0.200 5.200 16 C -0.025 4.025 17 C -0.179 4.179 18 C -0.184 4.184 19 O -0.362 6.362 20 Si 0.689 3.311 21 C -0.030 4.030 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.253 0.747 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.253 0.747 32 H 0.208 0.792 33 H 0.202 0.798 34 H 0.128 0.872 35 H 0.247 0.753 36 H -0.204 1.204 37 H -0.223 1.223 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.646 1.010 -3.918 5.447 hybrid contribution 0.174 -0.237 1.380 1.411 sum -3.472 0.773 -2.538 4.370 Atomic orbital electron populations 1.25677 0.96998 1.00606 1.00240 1.23705 0.95349 1.00834 1.00951 1.18478 0.83396 1.01068 0.97231 0.88901 1.21500 0.95765 1.02001 0.95004 1.21624 0.94331 1.00125 0.98904 1.21374 0.91914 1.01203 0.96397 0.89153 1.21481 0.94386 0.98813 0.85185 1.45802 1.05881 1.63183 1.20999 1.18210 0.82950 0.77939 0.85970 1.90804 1.56612 1.50775 1.47564 1.21006 0.95490 1.06804 0.96891 1.23441 1.01025 0.89635 0.87020 1.67806 1.17076 1.14437 1.20682 1.23227 0.87860 0.92772 0.98602 1.21446 0.98448 1.02446 0.95543 1.25249 0.88878 0.91624 1.12618 1.86513 1.62094 1.25607 1.62013 0.93780 0.79303 0.79281 0.78756 1.21652 0.94875 0.90661 0.95830 1.21501 0.94410 1.02544 0.96308 1.21493 0.95597 0.99363 0.97758 0.74745 0.91306 0.91586 0.90190 0.91377 0.91861 0.91738 0.74668 0.79161 0.79755 0.87234 0.75274 1.20383 1.22295 0.84723 0.90735 0.91018 0.91752 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.38 19.25 74.32 1.43 1.06 16 2 C -0.21 -0.53 12.56 31.13 0.39 -0.14 16 3 C 0.02 -0.03 2.56 -12.60 -0.03 -0.07 16 4 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 5 C -0.11 0.50 5.16 30.59 0.16 0.66 16 6 C -0.11 0.83 5.08 30.59 0.16 0.99 16 7 C -0.09 0.64 2.23 -10.80 -0.02 0.61 16 8 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 9 C 0.12 -0.38 5.06 86.38 0.44 0.06 16 10 N -0.71 2.36 5.24 -465.98 -2.44 -0.08 16 11 C 0.56 2.25 7.78 86.78 0.68 2.93 16 12 O -0.58 -7.61 16.42 -3.89 -0.06 -7.67 16 13 C -0.20 -0.27 5.89 -19.99 -0.12 -0.39 16 14 C 0.15 -0.41 10.71 85.02 0.91 0.50 16 15 N -0.49 0.25 10.35 -194.75 -2.01 -1.76 16 16 C 0.13 -0.33 9.84 84.71 0.83 0.50 16 17 C -0.18 0.15 5.35 -19.81 -0.11 0.05 16 18 C -0.07 0.14 2.82 71.23 0.20 0.34 16 19 O -0.55 0.29 12.84 -148.98 -1.91 -1.62 16 20 Si 0.78 -3.80 29.83 68.60 2.05 -1.76 16 21 C 0.00 -0.01 9.38 22.73 0.21 0.20 16 22 C -0.11 0.63 5.20 30.61 0.16 0.78 16 23 C -0.10 0.37 5.16 30.61 0.16 0.53 16 24 H 0.24 -1.02 7.80 -4.42 -0.03 -1.06 16 25 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.08 -0.79 7.18 -2.39 -0.02 -0.80 16 28 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.41 -4.01 5.72 -92.71 -0.53 -4.54 16 32 H 0.19 -1.96 6.42 -2.91 -0.02 -1.98 16 33 H 0.19 -1.49 4.91 -2.91 -0.01 -1.50 16 34 H 0.11 -0.04 7.96 -2.38 -0.02 -0.06 16 35 H 0.40 -3.61 8.70 -74.06 -0.64 -4.25 16 36 H -0.28 0.19 7.11 99.48 0.71 0.89 16 37 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 38 H 0.13 0.82 7.74 -2.91 -0.02 0.79 16 39 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 40 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -21.36 348.92 0.96 -20.40 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -0.10 Total: -16.13 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.44 Total: 8.62 kcal Atomic # 7 Polarization: 2.61 SS G_CDS: -4.46 Total: -1.84 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.98 Total: -9.29 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.05 Total: -1.76 kcal Total: -21.36 0.96 -20.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_13287814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.222 kcal (2) G-P(sol) polarization free energy of solvation -21.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds