Wall clock time and date at job start Tue Mar 9 2021 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09000 * 109.46951 * 237.90778 * 3 2 1 5 5 C 1.52995 * 109.47280 * 357.91267 * 3 2 1 6 6 C 1.53000 * 109.46924 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46846 * 299.99498 * 6 5 3 8 8 H 1.09000 * 109.47224 * 300.00064 * 7 6 5 9 9 C 1.53000 * 109.46810 * 180.02562 * 7 6 5 10 10 N 1.46494 * 109.46984 * 175.00495 * 9 7 6 11 11 C 1.34784 * 120.00153 * 180.02562 * 10 9 7 12 12 O 1.21634 * 119.99423 * 359.97438 * 11 10 9 13 13 C 1.47183 * 120.00149 * 179.97438 * 11 10 9 14 14 C 1.36011 * 123.46047 * 0.02562 * 13 11 10 15 15 S 1.70448 * 110.81640 * 179.97438 * 14 13 11 16 16 C 1.75506 * 92.44768 * 0.02562 * 15 14 13 17 17 C 1.50690 * 124.71452 * 179.97438 * 16 15 14 18 18 O 1.42906 * 109.47230 * 245.02684 * 17 16 15 19 19 Si 1.86298 * 109.47170 * 5.02319 * 17 16 15 20 20 C 1.32772 * 110.57234 * 359.97438 * 16 15 14 21 21 C 1.52995 * 109.46949 * 60.00517 * 7 6 5 22 22 C 1.52996 * 109.46699 * 117.91381 * 3 2 1 23 23 H 4.18742 * 15.03925 * 0.02562 * 4 2 1 24 24 H 1.09000 * 109.47527 * 59.99865 * 5 3 2 25 25 H 1.09001 * 109.47147 * 300.00046 * 5 3 2 26 26 H 1.08999 * 109.46951 * 179.97438 * 6 5 3 27 27 H 1.08992 * 109.47406 * 59.99863 * 6 5 3 28 28 H 1.08998 * 109.47369 * 54.99938 * 9 7 6 29 29 H 1.09005 * 109.46724 * 294.99968 * 9 7 6 30 30 H 0.96999 * 120.00433 * 359.97438 * 10 9 7 31 31 H 1.08000 * 124.59655 * 359.94245 * 14 13 11 32 32 H 1.08997 * 109.47327 * 125.02201 * 17 16 15 33 33 H 0.96692 * 113.99876 * 180.02562 * 18 17 16 34 34 H 1.48506 * 110.00243 * 178.68272 * 19 17 16 35 35 H 1.48495 * 110.00150 * 300.00153 * 19 17 16 36 36 H 1.07996 * 123.45849 * 180.02562 * 20 16 15 37 37 H 1.09000 * 109.47527 * 59.99733 * 21 7 6 38 38 H 1.09001 * 109.47147 * 179.97438 * 21 7 6 39 39 H 1.09003 * 109.47416 * 299.99277 * 22 3 2 40 40 H 1.08999 * 109.47405 * 59.99860 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0091 0.5468 0.8706 5 6 3.1567 -1.4406 0.0525 6 6 4.6867 -1.4398 0.0532 7 6 5.1968 -0.7641 -1.2213 8 1 4.8341 -1.3102 -2.0922 9 6 6.7268 -0.7639 -1.2210 10 7 7.2153 -0.2257 -2.4929 11 6 8.5405 -0.1300 -2.7197 12 8 9.3307 -0.4901 -1.8680 13 6 9.0313 0.4101 -3.9978 14 6 8.2116 0.8333 -4.9973 15 16 9.1179 1.3957 -6.3268 16 6 10.6428 1.0561 -5.5270 17 6 12.0017 1.3089 -6.1273 18 8 12.6762 0.0639 -6.3205 19 14 11.8055 2.1699 -7.7677 20 6 10.4328 0.5455 -4.3195 21 6 4.6862 0.6771 -1.2738 22 6 3.1556 0.6762 -1.2747 23 1 -1.0500 -0.0007 -0.0002 24 1 2.7937 -1.9867 -0.8181 25 1 2.7936 -1.9219 0.9606 26 1 5.0505 -2.4666 0.0911 27 1 5.0494 -0.8939 0.9240 28 1 7.0903 -1.7837 -1.0943 29 1 7.0898 -0.1443 -0.4009 30 1 6.5852 0.0611 -3.1722 31 1 7.1326 0.8149 -4.9546 32 1 12.5849 1.9375 -5.4545 33 1 13.5594 0.1506 -6.7044 34 1 13.1395 2.4534 -8.3553 35 1 11.0120 1.3231 -8.6941 36 1 11.2282 0.2607 -3.6468 37 1 5.0489 1.2231 -0.4030 38 1 5.0499 1.1586 -2.1816 39 1 2.7926 0.1301 -2.1454 40 1 2.7918 1.7030 -1.3121 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17850112_6894386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:05:58 Heat of formation + Delta-G solvation = 4.313419 kcal Electronic energy + Delta-G solvation = -21828.665454 eV Core-core repulsion = 18509.360033 eV Total energy + Delta-G solvation = -3319.305421 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.15220 -39.91339 -38.73132 -37.28455 -36.36506 -34.26074 -32.26285 -31.77080 -31.13150 -27.43810 -26.92676 -25.11914 -23.68367 -22.76516 -21.86608 -20.96216 -20.31212 -19.01784 -18.83169 -18.54038 -18.09343 -16.76453 -16.58543 -16.31109 -16.03884 -15.78788 -15.54545 -15.18584 -15.00049 -14.78367 -14.19003 -14.01467 -13.88801 -13.85615 -13.72437 -13.49867 -13.19751 -13.11356 -12.73537 -12.43184 -12.40851 -12.08266 -12.03832 -11.66954 -11.55708 -11.49573 -11.04664 -10.91616 -10.77523 -10.59970 -10.23197 -9.95747 -9.44794 -5.04433 -0.33822 0.37171 0.69911 0.82513 1.21325 1.57893 1.87911 1.88557 1.90371 2.11676 2.26929 3.30338 3.35133 3.64727 3.71097 3.76802 3.78044 3.92398 4.01403 4.14702 4.27050 4.29165 4.39187 4.42000 4.46607 4.46659 4.55036 4.67858 4.71541 4.75032 4.86661 4.95129 4.99561 5.12277 5.15311 5.17119 5.21126 5.22435 5.29369 5.34367 5.39589 5.53293 6.45916 6.52738 6.70359 7.14490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C 0.016 3.984 4 H 0.093 0.907 5 C -0.104 4.104 6 C -0.110 4.110 7 C -0.089 4.089 8 H 0.089 0.911 9 C 0.125 3.875 10 N -0.708 5.708 11 C 0.574 3.426 12 O -0.586 6.586 13 C -0.182 4.182 14 C -0.190 4.190 15 S 0.247 5.753 16 C -0.211 4.211 17 C -0.051 4.051 18 O -0.557 6.557 19 Si 0.725 3.275 20 C -0.078 4.078 21 C -0.111 4.111 22 C -0.104 4.104 23 H 0.236 0.764 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.207 0.793 32 H 0.101 0.899 33 H 0.398 0.602 34 H -0.258 1.258 35 H -0.268 1.268 36 H 0.133 0.867 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 4.514 -3.691 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.209 4.209 3 C -0.002 4.002 4 H 0.111 0.889 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.108 4.108 8 H 0.107 0.893 9 C 0.002 3.998 10 N -0.361 5.361 11 C 0.361 3.639 12 O -0.467 6.467 13 C -0.200 4.200 14 C -0.328 4.328 15 S 0.513 5.487 16 C -0.327 4.327 17 C -0.162 4.162 18 O -0.368 6.368 19 Si 0.625 3.375 20 C -0.108 4.108 21 C -0.149 4.149 22 C -0.142 4.142 23 H 0.253 0.747 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.252 0.748 31 H 0.224 0.776 32 H 0.119 0.881 33 H 0.249 0.751 34 H -0.182 1.182 35 H -0.194 1.194 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.918 4.595 -5.094 7.900 hybrid contribution 0.949 -1.493 1.570 2.365 sum -2.969 3.102 -3.524 5.555 Atomic orbital electron populations 1.25677 0.96983 1.00290 1.00489 1.23687 0.95319 1.00954 1.00891 1.18469 0.83443 0.98024 1.00231 0.88886 1.21479 0.95491 0.94604 1.02593 1.21492 0.94499 1.01437 0.97361 1.21360 0.91841 0.97562 1.00012 0.89319 1.21442 0.94412 0.98822 0.85136 1.45721 1.05904 1.64722 1.19707 1.17875 0.82693 0.77365 0.85965 1.90789 1.56746 1.51387 1.47813 1.20091 0.93502 1.10164 0.96204 1.26170 1.06304 1.02359 0.98005 1.82962 0.92855 1.58051 1.14794 1.23810 0.99358 1.10905 0.98644 1.24404 0.90275 0.90596 1.10876 1.86570 1.35209 1.29501 1.85506 0.94464 0.84121 0.85108 0.73783 1.21006 0.95276 0.98305 0.96171 1.21621 0.94366 0.95621 1.03283 1.21507 0.95648 1.00717 0.96315 0.74702 0.91562 0.91702 0.90837 0.91033 0.92256 0.91959 0.74833 0.77621 0.88126 0.75089 1.18223 1.19357 0.84895 0.91420 0.90253 0.91327 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.41 19.25 74.32 1.43 1.02 16 2 C -0.21 -0.59 12.56 31.12 0.39 -0.20 16 3 C 0.02 -0.02 2.56 -12.60 -0.03 -0.06 16 4 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 5 C -0.10 0.29 5.16 30.59 0.16 0.45 16 6 C -0.11 0.49 5.20 30.60 0.16 0.65 16 7 C -0.09 0.50 2.22 -10.79 -0.02 0.47 16 8 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 9 C 0.13 -0.10 5.07 86.38 0.44 0.34 16 10 N -0.71 0.50 5.25 -466.60 -2.45 -1.95 16 11 C 0.57 4.29 7.79 86.59 0.67 4.96 16 12 O -0.59 -9.99 16.80 -4.14 -0.07 -10.06 16 13 C -0.18 -0.77 5.98 -19.87 -0.12 -0.89 16 14 C -0.19 0.61 10.38 67.30 0.70 1.31 16 15 S 0.25 -0.72 20.20 -56.49 -1.14 -1.86 16 16 C -0.21 -0.55 5.69 24.51 0.14 -0.41 16 17 C -0.05 0.01 2.93 71.23 0.21 0.22 16 18 O -0.56 -1.69 12.86 -148.98 -1.92 -3.61 16 19 Si 0.72 -2.38 30.92 68.60 2.12 -0.26 16 20 C -0.08 -0.54 9.95 22.67 0.23 -0.31 16 21 C -0.11 0.71 5.08 30.61 0.16 0.87 16 22 C -0.10 0.45 5.16 30.61 0.16 0.61 16 23 H 0.24 -1.01 7.80 -4.42 -0.03 -1.04 16 24 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.06 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.41 -3.10 6.15 -92.71 -0.57 -3.67 16 31 H 0.21 -2.34 7.01 -2.91 -0.02 -2.36 16 32 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.40 -2.24 8.74 -74.06 -0.65 -2.88 16 34 H -0.26 0.03 7.11 99.48 0.71 0.74 16 35 H -0.27 -0.61 7.11 99.48 0.71 0.10 16 36 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.08 -0.70 7.18 -2.39 -0.02 -0.71 16 39 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: 0.00 -21.18 347.70 1.07 -20.11 By element: Atomic # 1 Polarization: -11.28 SS G_CDS: -0.13 Total: -11.41 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.66 Total: 9.04 kcal Atomic # 7 Polarization: 0.50 SS G_CDS: -2.45 Total: -1.95 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -1.98 Total: -13.67 kcal Atomic # 14 Polarization: -2.38 SS G_CDS: 2.12 Total: -0.26 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.14 Total: -1.86 kcal Total: -21.18 1.07 -20.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17850112_6894386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.422 kcal (2) G-P(sol) polarization free energy of solvation -21.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds