Wall clock time and date at job start Tue Mar 9 2021 13:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46970 * 2 1 4 4 C 1.50694 * 109.47448 * 239.99306 * 2 1 3 5 5 C 1.38400 * 119.82955 * 300.00142 * 4 2 1 6 6 C 1.37894 * 120.17254 * 179.97438 * 5 4 2 7 7 C 1.39831 * 119.82552 * 0.02562 * 6 5 4 8 8 C 1.47202 * 120.17054 * 179.97438 * 7 6 5 9 9 C 1.34814 * 120.00175 * 179.97438 * 8 7 6 10 10 C 1.46426 * 119.99968 * 179.72821 * 9 8 7 11 11 O 1.21698 * 120.00347 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99992 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00210 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.85133 * 336.20040 * 13 12 10 15 15 C 1.53781 * 113.61353 * 107.49942 * 13 12 10 16 16 C 1.53784 * 87.08351 * 139.98323 * 15 13 12 17 17 H 1.09001 * 113.68536 * 89.12573 * 16 15 13 18 18 C 1.50697 * 113.62025 * 220.02350 * 16 15 13 19 19 N 1.30168 * 126.80346 * 192.52305 * 18 16 15 20 20 O 1.20926 * 111.60422 * 179.97438 * 19 18 16 21 21 C 1.34041 * 111.56634 * 359.97438 * 20 19 18 22 22 C 1.35447 * 106.44375 * 359.75267 * 21 20 19 23 23 C 1.53773 * 113.61715 * 204.99782 * 13 12 10 24 24 C 1.39837 * 119.66240 * 0.24999 * 7 6 5 25 25 C 1.37898 * 119.82213 * 359.47411 * 24 7 6 26 26 H 0.96703 * 113.99927 * 60.01024 * 1 2 3 27 27 H 1.09009 * 109.46870 * 119.99273 * 2 1 3 28 28 H 1.48493 * 110.00311 * 59.99589 * 3 2 1 29 29 H 1.48502 * 109.99927 * 181.32177 * 3 2 1 30 30 H 1.07999 * 119.91412 * 0.02562 * 5 4 2 31 31 H 1.07993 * 120.08690 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.00359 * 0.02562 * 8 7 6 33 33 H 1.08000 * 119.99466 * 0.02562 * 9 8 7 34 34 H 0.97004 * 120.00037 * 0.02562 * 12 10 9 35 35 H 1.08998 * 113.61831 * 254.53575 * 15 13 12 36 36 H 1.09005 * 113.61658 * 25.43899 * 15 13 12 37 37 H 1.07998 * 126.77585 * 180.02562 * 21 20 19 38 38 H 1.08008 * 128.00613 * 180.23293 * 22 21 20 39 39 H 1.09003 * 113.61545 * 334.57270 * 23 13 12 40 40 H 1.09000 * 113.61493 * 105.38916 * 23 13 12 41 41 H 1.07995 * 120.09197 * 179.74665 * 24 7 6 42 42 H 1.07997 * 119.91233 * 180.27732 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 1.5949 -2.0356 -1.4457 6 6 2.0503 -2.6925 -2.5693 7 6 2.8545 -2.0164 -3.4921 8 6 3.3452 -2.7104 -4.6939 9 6 4.1199 -2.0552 -5.5816 10 6 4.6130 -2.7473 -6.7741 11 8 4.3239 -3.9141 -6.9636 12 7 5.3870 -2.0921 -7.6618 13 6 5.8809 -2.7847 -8.8545 14 1 5.9239 -3.8665 -8.7284 15 6 5.1896 -2.3413 -10.1547 16 6 6.5725 -2.4174 -10.8233 17 1 6.8053 -3.3985 -11.2373 18 6 6.8366 -1.2950 -11.7936 19 7 7.8061 -1.2246 -12.6593 20 8 7.7570 -0.2004 -13.3004 21 6 6.7181 0.5621 -12.9320 22 6 6.0763 -0.1132 -11.9488 23 6 7.1730 -2.1794 -9.4277 24 6 3.1949 -0.6793 -3.2645 25 6 2.7269 -0.0346 -2.1390 26 1 -0.3933 0.4416 -0.7652 27 1 1.7923 -0.5138 0.8901 28 1 1.5614 2.4680 1.2084 29 1 3.5345 1.7703 -0.0322 30 1 0.9734 -2.5563 -0.7323 31 1 1.7865 -3.7263 -2.7362 32 1 3.0841 -3.7443 -4.8650 33 1 4.3808 -1.0212 -5.4107 34 1 5.6178 -1.1621 -7.5105 35 1 4.4772 -3.0702 -10.5410 36 1 4.7814 -1.3316 -10.1099 37 1 6.4439 1.5231 -13.3417 38 1 5.1905 0.1837 -11.4069 39 1 7.3071 -1.1254 -9.1839 40 1 8.0621 -2.7768 -9.2258 41 1 3.8189 -0.1517 -3.9706 42 1 2.9852 0.9994 -1.9640 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_12360594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:12:52 Heat of formation + Delta-G solvation = 68.766670 kcal Electronic energy + Delta-G solvation = -25351.804484 eV Core-core repulsion = 21461.118954 eV Total energy + Delta-G solvation = -3890.685530 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.89887 -41.26187 -40.69580 -39.51437 -37.83885 -35.36128 -35.07933 -33.86759 -32.61669 -32.30862 -31.30286 -27.76241 -26.95567 -26.58885 -24.44215 -24.10146 -23.75327 -22.42804 -21.72242 -21.14092 -20.22536 -18.96237 -18.80607 -18.45890 -18.11387 -17.47578 -17.04530 -16.65414 -16.36566 -16.25361 -16.00311 -15.79629 -15.55662 -15.17377 -14.96814 -14.66519 -14.46222 -14.19955 -13.92086 -13.90669 -13.70442 -13.52285 -13.37037 -13.07497 -12.81069 -12.40294 -12.31134 -12.07719 -12.00985 -11.79762 -11.76562 -11.39679 -10.99043 -10.89757 -10.59425 -10.51653 -10.11081 -10.09039 -9.32303 -5.12216 -0.61438 0.28434 0.53867 0.85276 1.20514 1.21731 1.54802 1.89816 2.11251 2.23809 2.31631 2.73334 3.06410 3.23046 3.35032 3.44176 3.48949 3.55950 3.61078 3.72266 3.78866 3.79706 3.90093 4.06934 4.12068 4.16887 4.23026 4.33935 4.35372 4.42814 4.51204 4.54046 4.60379 4.64875 4.73621 4.81610 4.85862 4.86758 4.97766 4.99546 5.05062 5.14155 5.28554 5.38150 5.47672 5.52374 5.79050 6.46196 6.48145 7.20832 7.30762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.071 4.071 3 Si 0.689 3.311 4 C -0.107 4.107 5 C -0.095 4.095 6 C -0.092 4.092 7 C -0.074 4.074 8 C -0.014 4.014 9 C -0.216 4.216 10 C 0.549 3.451 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.125 3.875 14 H 0.121 0.879 15 C -0.140 4.140 16 C -0.034 4.034 17 H 0.113 0.887 18 C 0.028 3.972 19 N -0.362 5.362 20 O 0.099 5.901 21 C -0.055 4.055 22 C -0.233 4.233 23 C -0.132 4.132 24 C -0.095 4.095 25 C -0.120 4.120 26 H 0.380 0.620 27 H 0.115 0.885 28 H -0.254 1.254 29 H -0.258 1.258 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.217 0.783 38 H 0.171 0.829 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 6.091 -0.815 6.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.182 4.182 3 Si 0.591 3.409 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.074 4.074 8 C -0.034 4.034 9 C -0.237 4.237 10 C 0.339 3.661 11 O -0.421 6.421 12 N -0.366 5.366 13 C 0.020 3.980 14 H 0.139 0.861 15 C -0.179 4.179 16 C -0.054 4.054 17 H 0.131 0.869 18 C -0.131 4.131 19 N -0.065 5.065 20 O 0.033 5.967 21 C -0.137 4.137 22 C -0.255 4.255 23 C -0.171 4.171 24 C -0.113 4.113 25 C -0.137 4.137 26 H 0.227 0.773 27 H 0.133 0.867 28 H -0.179 1.179 29 H -0.183 1.183 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.237 0.763 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.188 0.812 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.149 0.851 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.191 4.733 -0.306 4.746 hybrid contribution -0.505 0.396 0.470 0.796 sum -0.696 5.129 0.164 5.178 Atomic orbital electron populations 1.86517 1.16926 1.81699 1.49275 1.25106 0.85391 1.10210 0.97498 0.94727 0.80924 0.77923 0.87306 1.20531 0.98269 0.95230 0.96752 1.20997 0.99025 0.93794 0.97455 1.21471 0.96015 1.00101 0.93383 1.19066 0.99242 0.93983 0.95079 1.22422 0.91141 0.99611 0.90196 1.22892 1.03610 1.01129 0.96032 1.18377 0.78173 0.86476 0.83104 1.90839 1.57768 1.16584 1.76863 1.45826 1.52214 1.15331 1.23252 1.22447 0.93651 0.98908 0.82978 0.86107 1.23552 0.95872 1.03169 0.95292 1.20692 0.97931 0.95610 0.91177 0.86907 1.23393 0.93379 0.97902 0.98393 1.73879 1.21920 1.03073 1.07629 1.84875 1.41192 1.22466 1.48181 1.26096 0.89519 0.99671 0.98386 1.22702 1.04430 0.95492 1.02856 1.23395 0.97863 1.02353 0.93536 1.21355 0.98965 0.93789 0.97209 1.20958 0.98567 0.99570 0.94627 0.77293 0.86730 1.17900 1.18267 0.85128 0.85032 0.84438 0.85177 0.76275 0.89986 0.89034 0.76603 0.81163 0.89174 0.89819 0.85063 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.22 12.76 -35.23 -0.45 -0.22 16 2 C -0.07 0.07 2.82 36.00 0.10 0.17 16 3 Si 0.69 -1.24 29.77 -169.99 -5.06 -6.30 16 4 C -0.11 0.08 5.40 -104.51 -0.56 -0.49 16 5 C -0.09 0.02 9.59 -39.65 -0.38 -0.36 16 6 C -0.09 0.04 9.80 -39.11 -0.38 -0.34 16 7 C -0.07 0.03 5.87 -105.06 -0.62 -0.58 16 8 C -0.01 0.00 9.46 -37.16 -0.35 -0.35 16 9 C -0.22 0.20 9.41 -37.50 -0.35 -0.15 16 10 C 0.55 0.67 7.74 -12.97 -0.10 0.57 16 11 O -0.54 -2.90 15.83 5.19 0.08 -2.82 16 12 N -0.72 1.08 5.35 -54.41 -0.29 0.78 16 13 C 0.13 -0.13 4.24 -67.12 -0.28 -0.42 16 14 H 0.12 0.07 7.46 -51.93 -0.39 -0.32 16 15 C -0.14 0.23 7.27 -25.92 -0.19 0.04 16 16 C -0.03 0.03 4.29 -90.96 -0.39 -0.36 16 17 H 0.11 -0.06 8.14 -51.93 -0.42 -0.48 16 18 C 0.03 0.03 6.70 -82.10 -0.55 -0.52 16 19 N -0.36 -1.15 12.07 33.42 0.40 -0.75 16 20 O 0.10 0.17 11.20 17.17 0.19 0.36 16 21 C -0.06 0.10 12.30 29.74 0.37 0.46 16 22 C -0.23 0.30 10.27 -39.38 -0.40 -0.10 16 23 C -0.13 0.24 7.38 -25.92 -0.19 0.05 16 24 C -0.10 0.14 9.41 -39.11 -0.37 -0.23 16 25 C -0.12 0.18 8.65 -39.65 -0.34 -0.16 16 26 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 27 H 0.12 -0.05 7.96 -51.92 -0.41 -0.46 16 28 H -0.25 -0.42 7.11 56.52 0.40 -0.01 16 29 H -0.26 -0.11 7.11 56.52 0.40 0.29 16 30 H 0.13 -0.09 8.06 -52.49 -0.42 -0.51 16 31 H 0.13 -0.23 8.06 -52.49 -0.42 -0.65 16 32 H 0.14 0.07 7.52 -52.49 -0.39 -0.32 16 33 H 0.13 -0.49 6.07 -52.49 -0.32 -0.81 16 34 H 0.40 -1.72 8.71 -40.82 -0.36 -2.07 16 35 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 36 H 0.09 -0.24 6.62 -51.93 -0.34 -0.59 16 37 H 0.22 -1.28 8.06 -52.49 -0.42 -1.70 16 38 H 0.17 -0.63 7.12 -52.48 -0.37 -1.01 16 39 H 0.09 -0.22 8.07 -51.93 -0.42 -0.64 16 40 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.13 -0.49 6.17 -52.49 -0.32 -0.82 16 42 H 0.13 -0.43 4.85 -52.49 -0.25 -0.69 16 LS Contribution 359.65 15.07 5.42 5.42 Total: 0.00 -9.76 359.65 -9.63 -19.39 By element: Atomic # 1 Polarization: -8.16 SS G_CDS: -4.92 Total: -13.08 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -5.00 Total: -2.78 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: 0.11 Total: 0.04 kcal Atomic # 8 Polarization: -2.51 SS G_CDS: -0.18 Total: -2.68 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.06 Total: -6.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -9.76 -9.63 -19.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_12360594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.153 kcal (2) G-P(sol) polarization free energy of solvation -9.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds