Wall clock time and date at job start Tue Mar 9 2021 13:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.46987 * 2 1 4 4 C 1.50699 * 109.47024 * 239.99509 * 2 1 3 5 5 C 1.33740 * 125.12367 * 299.99730 * 4 2 1 6 6 C 1.37797 * 115.08174 * 180.02562 * 5 4 2 7 7 C 1.34975 * 114.70126 * 0.02562 * 6 5 4 8 8 C 1.47564 * 125.27594 * 180.02562 * 7 6 5 9 9 C 1.39815 * 120.00276 * 180.02562 * 8 7 6 10 10 C 1.36555 * 120.00497 * 179.97438 * 9 8 7 11 11 C 1.39832 * 119.99864 * 0.02562 * 10 9 8 12 12 C 1.47564 * 120.00085 * 179.97438 * 11 10 9 13 13 O 1.21593 * 120.00155 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99835 * 179.72680 * 12 11 10 15 15 C 1.46499 * 120.00195 * 180.27874 * 14 12 11 16 16 H 1.09003 * 112.84782 * 336.19400 * 15 14 12 17 17 C 1.53783 * 113.61627 * 107.49574 * 15 14 12 18 18 C 1.53783 * 87.07930 * 139.98233 * 17 15 14 19 19 H 1.08999 * 113.61623 * 89.11690 * 18 17 15 20 20 C 1.50700 * 113.61640 * 220.01916 * 18 17 15 21 21 N 1.30175 * 126.80054 * 192.52151 * 20 18 17 22 22 O 1.20925 * 111.60007 * 179.97438 * 21 20 18 23 23 C 1.34038 * 111.56805 * 0.02562 * 22 21 20 24 24 C 1.35452 * 106.44667 * 359.74712 * 23 22 21 25 25 C 1.53780 * 113.61549 * 204.99613 * 15 14 12 26 26 C 1.39830 * 119.99512 * 0.25382 * 11 10 9 27 27 C 1.36561 * 120.00184 * 359.48455 * 26 11 10 28 28 S 1.75861 * 125.11672 * 120.30457 * 4 2 1 29 29 H 0.96698 * 114.00390 * 60.00525 * 1 2 3 30 30 H 1.09001 * 109.46837 * 119.99689 * 2 1 3 31 31 H 1.48508 * 109.99893 * 298.67559 * 3 2 1 32 32 H 1.48496 * 110.00300 * 59.99938 * 3 2 1 33 33 H 1.08005 * 122.45915 * 0.02670 * 5 4 2 34 34 H 1.08004 * 122.64359 * 179.97438 * 6 5 4 35 35 H 1.08004 * 120.00011 * 359.95618 * 9 8 7 36 36 H 1.08001 * 120.00078 * 179.97438 * 10 9 8 37 37 H 0.97000 * 119.99736 * 0.27146 * 14 12 11 38 38 H 1.08995 * 113.61478 * 254.53350 * 17 15 14 39 39 H 1.09000 * 113.61177 * 25.43725 * 17 15 14 40 40 H 1.08000 * 126.77677 * 180.02562 * 23 22 21 41 41 H 1.08000 * 128.00480 * 180.23264 * 24 23 22 42 42 H 1.08999 * 113.61422 * 334.57128 * 25 15 14 43 43 H 1.09002 * 113.61034 * 105.38494 * 25 15 14 44 44 H 1.08004 * 120.00132 * 179.74951 * 26 11 10 45 45 H 1.07992 * 120.00337 * 180.25753 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6722 -1.9848 -1.5427 6 6 2.2382 -2.4245 -2.7197 7 6 2.9684 -1.4977 -3.3751 8 6 3.6738 -1.7159 -4.6527 9 6 4.4014 -0.6744 -5.2364 10 6 5.0546 -0.8765 -6.4184 11 6 4.9955 -2.1250 -7.0454 12 6 5.7010 -2.3432 -8.3229 13 8 6.3341 -1.4376 -8.8303 14 7 5.6485 -3.5482 -8.9244 15 6 6.3539 -3.7668 -10.1896 16 1 6.5241 -2.8439 -10.7442 17 6 7.6086 -4.6451 -10.0517 18 6 7.1971 -5.3042 -11.3788 19 1 7.5991 -4.8022 -12.2588 20 6 7.4126 -6.7955 -11.4046 21 7 7.3721 -7.5713 -12.4491 22 8 7.5858 -8.7247 -12.1555 23 6 7.8012 -8.8665 -10.8402 24 6 7.7042 -7.6282 -10.3000 25 6 5.7529 -4.8962 -11.0429 26 6 4.2631 -3.1649 -6.4645 27 6 3.6142 -2.9643 -5.2798 28 16 2.9529 0.0090 -2.4679 29 1 -0.3934 0.4416 -0.7650 30 1 1.7923 -0.5138 0.8900 31 1 1.5879 2.4585 -1.2244 32 1 1.5615 2.4679 1.2084 33 1 1.0639 -2.6225 -0.9184 34 1 2.1084 -3.4315 -3.0880 35 1 4.4465 0.2901 -4.7526 36 1 5.6163 -0.0718 -6.8695 37 1 5.1438 -4.2708 -8.5194 38 1 8.5421 -4.0857 -10.1130 39 1 7.5754 -5.3230 -9.1988 40 1 8.0149 -9.7860 -10.3154 41 1 7.8205 -7.3433 -9.2647 42 1 5.2124 -5.6427 -10.4609 43 1 5.1871 -4.5395 -11.9035 44 1 4.2140 -4.1281 -6.9507 45 1 3.0519 -3.7687 -4.8291 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_13308390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:13:44 Heat of formation + Delta-G solvation = 88.462804 kcal Electronic energy + Delta-G solvation = -30007.883554 eV Core-core repulsion = 25666.988318 eV Total energy + Delta-G solvation = -4340.895236 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.102 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.90511 -41.57598 -40.48015 -39.51511 -38.90481 -37.51185 -35.43079 -34.20004 -33.32306 -32.62458 -32.26350 -30.54243 -27.72493 -26.97391 -26.64110 -24.80812 -24.13498 -23.94861 -23.46352 -22.35054 -21.55782 -20.92813 -20.34529 -19.21835 -18.87621 -18.61632 -18.45045 -17.77181 -17.40467 -16.71992 -16.53197 -16.39184 -16.26432 -16.20740 -15.98293 -15.67187 -15.48912 -15.06631 -14.67940 -14.57898 -14.42718 -14.31355 -13.88957 -13.84025 -13.77211 -13.67414 -13.56565 -13.30974 -13.16906 -12.83979 -12.58821 -12.40808 -12.37524 -12.17333 -12.01767 -11.79382 -11.57371 -11.01605 -10.92341 -10.90730 -10.68081 -10.60069 -10.26357 -10.14699 -9.60828 -9.08542 -5.14464 -0.93714 0.20584 0.27430 0.33126 0.53293 0.69950 1.14341 1.20836 1.49559 1.52513 1.83304 1.95788 2.00976 2.30741 2.78888 3.05079 3.19625 3.20715 3.35535 3.43828 3.54749 3.56455 3.62985 3.69228 3.74821 3.78439 3.89494 4.10344 4.15762 4.22229 4.30391 4.33178 4.41798 4.45342 4.49412 4.51414 4.54625 4.59936 4.63216 4.79347 4.82508 4.84775 4.92251 4.97209 5.03108 5.10505 5.16599 5.21362 5.24296 5.39877 5.41603 5.66347 6.23080 6.38340 7.13072 7.30107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.033 4.033 3 Si 0.648 3.352 4 C -0.217 4.217 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.149 4.149 8 C 0.014 3.986 9 C -0.120 4.120 10 C -0.048 4.048 11 C -0.137 4.137 12 C 0.561 3.439 13 O -0.532 6.532 14 N -0.716 5.716 15 C 0.125 3.875 16 H 0.123 0.877 17 C -0.140 4.140 18 C -0.034 4.034 19 H 0.113 0.887 20 C 0.028 3.972 21 N -0.362 5.362 22 O 0.100 5.900 23 C -0.055 4.055 24 C -0.234 4.234 25 C -0.133 4.133 26 C -0.078 4.078 27 C -0.110 4.110 28 S 0.135 5.865 29 H 0.378 0.622 30 H 0.128 0.872 31 H -0.240 1.240 32 H -0.234 1.234 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.131 0.869 36 H 0.142 0.858 37 H 0.401 0.599 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.217 0.783 41 H 0.171 0.829 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -3.525 3.672 5.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.145 4.145 3 Si 0.547 3.453 4 C -0.334 4.334 5 C -0.135 4.135 6 C -0.150 4.150 7 C -0.266 4.266 8 C 0.012 3.988 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.141 4.141 12 C 0.349 3.651 13 O -0.409 6.409 14 N -0.367 5.367 15 C 0.020 3.980 16 H 0.140 0.860 17 C -0.179 4.179 18 C -0.054 4.054 19 H 0.132 0.868 20 C -0.131 4.131 21 N -0.065 5.065 22 O 0.033 5.967 23 C -0.136 4.136 24 C -0.255 4.255 25 C -0.172 4.172 26 C -0.097 4.097 27 C -0.130 4.130 28 S 0.402 5.598 29 H 0.226 0.774 30 H 0.146 0.854 31 H -0.164 1.164 32 H -0.157 1.157 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.237 0.763 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.234 0.766 41 H 0.188 0.812 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.147 0.853 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.993 -0.657 2.360 2.644 hybrid contribution -1.749 -2.119 0.873 2.883 sum -0.756 -2.776 3.233 4.328 Atomic orbital electron populations 1.86628 1.17165 1.79913 1.49282 1.24376 0.83845 1.10046 0.96246 0.95230 0.91835 0.75180 0.83059 1.25043 1.06988 0.99082 1.02334 1.20002 1.01213 0.94828 0.97411 1.20387 0.98712 1.00516 0.95342 1.23090 1.05975 0.98060 0.99439 1.18298 0.95209 0.94092 0.91247 1.20980 0.97969 0.98747 0.96185 1.20953 0.95960 0.96259 0.93540 1.20011 1.02100 0.95633 0.96316 1.18253 0.80187 0.82375 0.84292 1.90812 1.42190 1.42415 1.65467 1.45865 1.53364 1.13332 1.24184 1.22486 0.92198 0.98576 0.84694 0.85953 1.23557 0.99340 0.98496 0.96516 1.20686 0.97825 0.86823 1.00044 0.86849 1.23382 1.02689 0.97943 0.89046 1.73883 1.18324 0.90077 1.24182 1.84875 1.64528 1.22621 1.24680 1.26098 1.02203 1.01311 0.84036 1.22700 1.09004 0.92219 1.01576 1.23400 0.95796 0.97515 1.00447 1.20950 0.95402 0.98143 0.95196 1.20868 1.00302 0.96384 0.95433 1.84174 1.48307 1.12682 1.14645 0.77390 0.85428 1.16385 1.15696 0.83654 0.83770 0.85121 0.84026 0.76321 0.89890 0.89023 0.76602 0.81172 0.89184 0.89720 0.85270 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.23 12.86 -35.23 -0.45 -0.68 16 2 C -0.03 0.03 2.96 36.01 0.11 0.13 16 3 Si 0.65 -0.74 30.96 -169.99 -5.26 -6.00 16 4 C -0.22 0.09 5.73 -35.89 -0.21 -0.11 16 5 C -0.10 0.05 10.00 -41.32 -0.41 -0.37 16 6 C -0.12 0.08 9.64 -40.90 -0.39 -0.31 16 7 C -0.15 0.00 6.37 -36.94 -0.24 -0.23 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.62 16 9 C -0.12 -0.01 9.54 -39.60 -0.38 -0.39 16 10 C -0.05 -0.04 9.53 -39.59 -0.38 -0.42 16 11 C -0.14 -0.06 5.88 -104.90 -0.62 -0.67 16 12 C 0.56 0.92 7.76 -12.46 -0.10 0.83 16 13 O -0.53 -2.88 15.93 5.28 0.08 -2.79 16 14 N -0.72 0.95 5.30 -54.05 -0.29 0.67 16 15 C 0.13 -0.15 4.24 -67.12 -0.28 -0.43 16 16 H 0.12 0.04 7.46 -51.93 -0.39 -0.35 16 17 C -0.14 0.24 7.27 -25.92 -0.19 0.06 16 18 C -0.03 0.03 4.29 -90.96 -0.39 -0.36 16 19 H 0.11 -0.08 8.14 -51.93 -0.42 -0.50 16 20 C 0.03 0.02 6.70 -82.10 -0.55 -0.53 16 21 N -0.36 -1.11 12.07 33.42 0.40 -0.70 16 22 O 0.10 0.16 11.20 17.18 0.19 0.35 16 23 C -0.06 0.10 12.30 29.74 0.37 0.46 16 24 C -0.23 0.32 10.27 -39.38 -0.40 -0.08 16 25 C -0.13 0.26 7.38 -25.92 -0.19 0.07 16 26 C -0.08 0.14 9.48 -39.59 -0.38 -0.23 16 27 C -0.11 0.16 9.48 -39.59 -0.38 -0.22 16 28 S 0.13 -0.06 19.46 -107.50 -2.09 -2.15 16 29 H 0.38 -0.85 8.70 45.56 0.40 -0.46 16 30 H 0.13 -0.23 7.96 -51.93 -0.41 -0.65 16 31 H -0.24 -0.18 7.11 56.52 0.40 0.23 16 32 H -0.23 -0.36 7.11 56.52 0.40 0.04 16 33 H 0.15 -0.18 8.06 -52.48 -0.42 -0.60 16 34 H 0.14 -0.38 6.88 -52.48 -0.36 -0.74 16 35 H 0.13 -0.14 7.26 -52.48 -0.38 -0.52 16 36 H 0.14 0.13 7.64 -52.49 -0.40 -0.27 16 37 H 0.40 -1.58 6.74 -40.82 -0.28 -1.86 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 39 H 0.09 -0.25 6.62 -51.93 -0.34 -0.59 16 40 H 0.22 -1.29 8.06 -52.49 -0.42 -1.71 16 41 H 0.17 -0.64 7.12 -52.49 -0.37 -1.01 16 42 H 0.09 -0.24 8.07 -51.93 -0.42 -0.66 16 43 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.13 -0.61 6.38 -52.48 -0.34 -0.95 16 45 H 0.13 -0.47 6.74 -52.49 -0.35 -0.82 16 LS Contribution 394.81 15.07 5.95 5.95 Total: 0.00 -9.25 394.81 -12.04 -21.29 By element: Atomic # 1 Polarization: -7.55 SS G_CDS: -4.96 Total: -12.51 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -5.62 Total: -3.42 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: 0.12 Total: -0.04 kcal Atomic # 8 Polarization: -2.94 SS G_CDS: -0.18 Total: -3.12 kcal Atomic # 14 Polarization: -0.74 SS G_CDS: -5.26 Total: -6.00 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -2.09 Total: -2.15 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -9.25 -12.04 -21.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_13308390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.757 kcal (2) G-P(sol) polarization free energy of solvation -9.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds