Wall clock time and date at job start Tue Mar 9 2021 13:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46927 * 2 1 4 4 C 1.50706 * 109.46940 * 240.00484 * 2 1 3 5 5 C 1.32770 * 124.71174 * 299.99775 * 4 2 1 6 6 C 1.44425 * 113.08301 * 180.26974 * 5 4 2 7 7 C 1.47190 * 123.45947 * 179.72701 * 6 5 4 8 8 O 1.21629 * 119.99992 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99739 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99790 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85183 * 23.79855 * 10 9 7 12 12 C 1.53778 * 113.61142 * 155.00020 * 10 9 7 13 13 C 1.53787 * 87.08037 * 139.97940 * 12 10 9 14 14 H 1.08997 * 113.61524 * 89.11115 * 13 12 10 15 15 C 1.50696 * 113.61267 * 220.01688 * 13 12 10 16 16 N 1.30175 * 126.79955 * 264.68555 * 15 13 12 17 17 O 1.20930 * 111.60242 * 179.80133 * 16 15 13 18 18 C 1.34041 * 111.56206 * 0.47986 * 17 16 15 19 19 C 1.35443 * 106.45153 * 359.71125 * 18 17 16 20 20 C 1.53778 * 113.61011 * 252.49685 * 10 9 7 21 21 C 1.36011 * 113.07836 * 359.50680 * 6 5 4 22 22 S 1.70453 * 110.81620 * 0.47711 * 21 6 5 23 23 H 0.96704 * 114.00312 * 59.99842 * 1 2 3 24 24 H 1.08990 * 109.47243 * 120.00147 * 2 1 3 25 25 H 1.48500 * 110.00055 * 60.00318 * 3 2 1 26 26 H 1.48500 * 110.00143 * 181.32032 * 3 2 1 27 27 H 1.08002 * 123.45547 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99997 * 359.97438 * 9 7 6 29 29 H 1.09001 * 113.61478 * 254.52164 * 12 10 9 30 30 H 1.08994 * 113.62195 * 25.34667 * 12 10 9 31 31 H 1.08008 * 126.77219 * 179.73212 * 18 17 16 32 32 H 1.07993 * 128.00831 * 179.97438 * 19 18 17 33 33 H 1.09002 * 113.61809 * 334.56417 * 20 10 9 34 34 H 1.09000 * 113.61581 * 105.47193 * 20 10 9 35 35 H 1.07999 * 124.59229 * 180.19635 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6688 -1.9762 -1.5329 6 6 2.2827 -2.4022 -2.7689 7 6 2.1460 -3.7616 -3.3165 8 8 1.4880 -4.5936 -2.7215 9 7 2.7502 -4.0843 -4.4773 10 6 2.6137 -5.4371 -5.0227 11 1 1.7187 -5.9483 -4.6680 12 6 2.8004 -5.5083 -6.5475 13 6 3.5773 -6.8145 -6.3124 14 1 2.9464 -7.7034 -6.3101 15 6 4.7930 -6.9602 -7.1909 16 7 4.8636 -7.5942 -8.3256 17 8 5.9739 -7.5339 -8.8010 18 6 6.8093 -6.8404 -8.0149 19 6 6.0843 -6.4405 -6.9430 20 6 3.8942 -6.2805 -4.9055 21 6 2.9960 -1.4168 -3.3772 22 16 2.9445 0.0209 -2.4630 23 1 -0.3934 0.4417 -0.7650 24 1 1.7923 -0.5138 0.8899 25 1 1.5615 2.4679 1.2085 26 1 3.5345 1.7704 -0.0322 27 1 1.0627 -2.6225 -0.9154 28 1 3.2746 -3.4206 -4.9520 29 1 1.8684 -5.6472 -7.0954 30 1 3.4122 -4.7014 -6.9507 31 1 7.8543 -6.6397 -8.2000 32 1 6.4158 -5.8597 -6.0952 33 1 4.8064 -5.6855 -4.8596 34 1 3.8454 -7.0428 -4.1279 35 1 3.5271 -1.5312 -4.3106 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_18339242_6894386.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:17 Heat of formation + Delta-G solvation = 59.498224 kcal Electronic energy + Delta-G solvation = -21677.043398 eV Core-core repulsion = 18158.871964 eV Total energy + Delta-G solvation = -3518.171434 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.91145 -41.36340 -39.86364 -38.68295 -37.08911 -35.38304 -33.98182 -32.63763 -31.71203 -27.41531 -27.00401 -26.96411 -25.38293 -24.02914 -22.53233 -21.79385 -21.11919 -20.32496 -19.05596 -18.81118 -18.47290 -18.12201 -17.67550 -17.18743 -16.47758 -16.27999 -16.02325 -15.83939 -15.52489 -15.20287 -14.56519 -14.46509 -14.16726 -13.95807 -13.86635 -13.67152 -13.61706 -13.44822 -12.86644 -12.69295 -12.40476 -12.29448 -12.04386 -11.92952 -11.79678 -10.99093 -10.89780 -10.66274 -10.60582 -10.17465 -10.03931 -9.55453 -5.24134 -0.41749 0.28228 0.52471 0.63416 0.86891 1.14293 1.20228 1.50924 1.82904 2.03845 2.29881 2.30853 3.04753 3.20550 3.28603 3.43347 3.52191 3.57528 3.77572 3.78561 3.86141 3.94089 4.15037 4.22674 4.32567 4.36371 4.49051 4.52367 4.59024 4.63121 4.66358 4.79321 4.84646 4.96147 4.99558 5.12018 5.17480 5.42756 6.39554 6.43329 7.16298 7.29359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.026 4.026 3 Si 0.654 3.346 4 C -0.244 4.244 5 C -0.053 4.053 6 C -0.156 4.156 7 C 0.579 3.421 8 O -0.530 6.530 9 N -0.716 5.716 10 C 0.127 3.873 11 H 0.123 0.877 12 C -0.132 4.132 13 C -0.034 4.034 14 H 0.114 0.886 15 C 0.029 3.971 16 N -0.362 5.362 17 O 0.100 5.900 18 C -0.055 4.055 19 C -0.234 4.234 20 C -0.140 4.140 21 C -0.206 4.206 22 S 0.197 5.803 23 H 0.381 0.619 24 H 0.124 0.876 25 H -0.232 1.232 26 H -0.236 1.236 27 H 0.157 0.843 28 H 0.400 0.600 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.217 0.783 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.947 5.462 -2.652 7.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.139 4.139 3 Si 0.553 3.447 4 C -0.360 4.360 5 C -0.082 4.082 6 C -0.174 4.174 7 C 0.365 3.635 8 O -0.407 6.407 9 N -0.367 5.367 10 C 0.022 3.978 11 H 0.141 0.859 12 C -0.171 4.171 13 C -0.054 4.054 14 H 0.132 0.868 15 C -0.130 4.130 16 N -0.065 5.065 17 O 0.033 5.967 18 C -0.136 4.136 19 C -0.255 4.255 20 C -0.179 4.179 21 C -0.345 4.345 22 S 0.463 5.537 23 H 0.229 0.771 24 H 0.141 0.859 25 H -0.155 1.155 26 H -0.161 1.161 27 H 0.174 0.826 28 H 0.235 0.765 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.234 0.766 32 H 0.188 0.812 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.781 5.898 -2.168 7.334 hybrid contribution 0.430 -1.292 0.501 1.451 sum 4.211 4.607 -1.667 6.460 Atomic orbital electron populations 1.86545 1.16514 1.81662 1.49147 1.24448 0.85304 1.09068 0.95096 0.95100 0.82040 0.77522 0.90033 1.24811 1.08538 0.99216 1.03454 1.21053 0.98076 0.94352 0.94725 1.20260 1.04462 0.94666 0.98025 1.17654 0.78749 0.86566 0.80502 1.90827 1.40137 1.50474 1.59218 1.45789 1.53362 1.13666 1.23861 1.22476 0.99531 0.82725 0.93105 0.85931 1.23397 1.01094 0.96852 0.95773 1.20687 0.92184 0.99193 0.93308 0.86828 1.23385 0.96793 0.98638 0.94215 1.73885 1.00416 1.20010 1.12161 1.84878 1.14353 1.55449 1.42002 1.26096 0.99030 0.96939 0.91576 1.22696 0.92954 1.07586 1.02300 1.23561 0.98856 0.99793 0.95740 1.25785 1.04549 0.98955 1.05162 1.83103 1.46799 1.11439 1.12355 0.77126 0.85870 1.15505 1.16051 0.82563 0.76535 0.89702 0.89207 0.76602 0.81205 0.89074 0.89903 0.81187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.08 12.85 -35.23 -0.45 -0.37 16 2 C -0.03 0.02 2.95 36.01 0.11 0.13 16 3 Si 0.65 -1.23 30.91 -169.99 -5.25 -6.48 16 4 C -0.24 0.12 5.68 -36.18 -0.21 -0.09 16 5 C -0.05 -0.07 9.91 -39.02 -0.39 -0.45 16 6 C -0.16 -0.10 5.98 -104.63 -0.63 -0.73 16 7 C 0.58 1.22 7.79 -12.62 -0.10 1.12 16 8 O -0.53 -3.26 16.40 5.25 0.09 -3.17 16 9 N -0.72 0.80 5.32 -54.17 -0.29 0.51 16 10 C 0.13 -0.12 4.24 -67.12 -0.28 -0.41 16 11 H 0.12 0.07 7.46 -51.93 -0.39 -0.31 16 12 C -0.13 0.24 7.38 -25.92 -0.19 0.05 16 13 C -0.03 0.03 4.29 -90.96 -0.39 -0.36 16 14 H 0.11 -0.06 8.14 -51.93 -0.42 -0.48 16 15 C 0.03 0.03 6.70 -82.10 -0.55 -0.52 16 16 N -0.36 -1.14 12.07 33.42 0.40 -0.74 16 17 O 0.10 0.17 11.20 17.17 0.19 0.36 16 18 C -0.05 0.09 12.30 29.73 0.37 0.46 16 19 C -0.23 0.29 10.28 -39.38 -0.40 -0.11 16 20 C -0.14 0.21 7.27 -25.92 -0.19 0.02 16 21 C -0.21 0.43 10.38 29.93 0.31 0.74 16 22 S 0.20 -0.44 20.18 -107.50 -2.17 -2.61 16 23 H 0.38 -1.55 8.70 45.56 0.40 -1.15 16 24 H 0.12 -0.06 7.96 -51.93 -0.41 -0.48 16 25 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 26 H -0.24 0.02 7.11 56.52 0.40 0.42 16 27 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 28 H 0.40 -1.54 7.22 -40.82 -0.29 -1.84 16 29 H 0.08 -0.14 8.14 -51.93 -0.42 -0.57 16 30 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 31 H 0.22 -1.27 8.06 -52.48 -0.42 -1.69 16 32 H 0.17 -0.61 7.12 -52.49 -0.37 -0.99 16 33 H 0.09 -0.23 6.62 -51.93 -0.34 -0.57 16 34 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.17 -0.86 7.01 -52.49 -0.37 -1.23 16 LS Contribution 319.00 15.07 4.81 4.81 Total: 0.00 -9.04 319.00 -8.73 -17.77 By element: Atomic # 1 Polarization: -6.40 SS G_CDS: -3.52 Total: -9.92 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.54 Total: -0.15 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: 0.12 Total: -0.23 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -0.17 Total: -3.18 kcal Atomic # 14 Polarization: -1.23 SS G_CDS: -5.25 Total: -6.48 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.17 Total: -2.61 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -9.04 -8.73 -17.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_6894386.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.270 kcal (2) G-P(sol) polarization free energy of solvation -9.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds