Wall clock time and date at job start Tue Mar 9 2021 13:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46645 * 2 1 4 4 C 1.50699 * 109.47152 * 119.99802 * 2 1 3 5 5 C 1.34234 * 126.49843 * 255.02855 * 4 2 1 6 6 N 1.36828 * 109.93925 * 179.97438 * 5 4 2 7 7 C 1.46496 * 125.06636 * 180.02562 * 6 5 4 8 8 C 1.50708 * 109.47096 * 264.96916 * 7 6 5 9 9 O 1.21279 * 119.99729 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00109 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00124 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.84632 * 23.80333 * 11 10 8 13 13 C 1.53772 * 113.61715 * 155.00296 * 11 10 8 14 14 C 1.53784 * 87.08358 * 139.98162 * 13 11 10 15 15 H 1.08994 * 113.61556 * 89.20030 * 14 13 11 16 16 C 1.50701 * 113.61657 * 220.02094 * 14 13 11 17 17 N 1.30175 * 126.79884 * 264.69054 * 16 14 13 18 18 O 1.20922 * 111.59916 * 179.79787 * 17 16 14 19 19 C 1.34043 * 111.56866 * 0.47681 * 18 17 16 20 20 C 1.35448 * 106.44502 * 359.71474 * 19 18 17 21 21 C 1.53780 * 113.61438 * 252.50462 * 11 10 8 22 22 C 1.37696 * 109.87288 * 359.97438 * 6 5 4 23 23 C 1.39084 * 133.50782 * 180.02562 * 22 6 5 24 24 C 1.37796 * 119.77332 * 179.97438 * 23 22 6 25 25 C 1.38786 * 120.66350 * 359.97438 * 24 23 22 26 26 C 1.36661 * 120.53213 * 0.02830 * 25 24 23 27 27 C 1.39592 * 119.76241 * 359.67113 * 26 25 24 28 28 H 0.96700 * 114.00311 * 60.00382 * 1 2 3 29 29 H 1.08997 * 109.47332 * 240.00042 * 2 1 3 30 30 H 1.48499 * 109.99670 * 298.67876 * 3 2 1 31 31 H 1.48497 * 110.00233 * 59.99845 * 3 2 1 32 32 H 1.08003 * 125.03199 * 359.95592 * 5 4 2 33 33 H 1.09003 * 109.47107 * 24.96568 * 7 6 5 34 34 H 1.09000 * 109.47752 * 144.96727 * 7 6 5 35 35 H 0.96997 * 119.99768 * 0.02562 * 10 8 7 36 36 H 1.08997 * 113.61926 * 254.53097 * 13 11 10 37 37 H 1.09005 * 113.61408 * 25.43377 * 13 11 10 38 38 H 1.08003 * 126.77166 * 179.73154 * 19 18 17 39 39 H 1.07998 * 128.00570 * 180.02562 * 20 19 18 40 40 H 1.09005 * 113.61542 * 334.55962 * 21 11 10 41 41 H 1.09000 * 113.62045 * 105.47072 * 21 11 10 42 42 H 1.07993 * 120.11253 * 359.93304 * 23 22 6 43 43 H 1.07994 * 119.66472 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.73430 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.11637 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4603 -0.1375 2.3231 6 7 2.8020 -1.0987 3.2350 7 6 3.4057 -0.8400 4.5444 8 6 4.9042 -0.9626 4.4398 9 8 5.4171 -1.2393 3.3763 10 7 5.6741 -0.7647 5.5282 11 6 7.1307 -0.8833 5.4264 12 1 7.4987 -0.7219 4.4131 13 6 7.8904 -0.0777 6.4933 14 6 8.8528 -1.2727 6.5976 15 1 9.6933 -1.2181 5.9058 16 6 9.2764 -1.5853 8.0096 17 7 10.3585 -1.1774 8.6074 18 8 10.4222 -1.5895 9.7425 19 6 9.3648 -2.3540 10.0493 20 6 8.5804 -2.3844 8.9454 21 6 7.6938 -2.1491 6.0939 22 6 2.4928 -2.3454 2.7389 23 6 2.6272 -3.6358 3.2403 24 6 2.2128 -4.7104 2.4838 25 6 1.6614 -4.5190 1.2247 26 6 1.5202 -3.2598 0.7127 27 6 1.9274 -2.1564 1.4645 28 1 -0.3934 0.4416 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5877 2.4585 -1.2243 31 1 1.5613 2.4680 1.2084 32 1 2.5964 0.9249 2.4619 33 1 3.1455 0.1666 4.8720 34 1 3.0314 -1.5653 5.2669 35 1 5.2637 -0.5437 6.3788 36 1 8.3585 0.8273 6.1061 37 1 7.3129 0.0983 7.4009 38 1 9.1756 -2.8480 10.9909 39 1 7.6407 -2.8994 8.8114 40 1 7.0626 -2.5394 6.8923 41 1 8.0032 -2.9163 5.3841 42 1 3.0553 -3.7950 4.2189 43 1 2.3183 -5.7116 2.8747 44 1 1.3420 -5.3721 0.6444 45 1 1.0905 -3.1187 -0.2681 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_18339242_9818708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:25 Heat of formation + Delta-G solvation = 101.258167 kcal Electronic energy + Delta-G solvation = -30174.823770 eV Core-core repulsion = 25936.357506 eV Total energy + Delta-G solvation = -4238.466263 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.88573 -42.52246 -41.12985 -39.53347 -38.07701 -37.68454 -35.36134 -34.29314 -33.75764 -32.56741 -31.42481 -30.27690 -29.13986 -26.93524 -26.82818 -25.56769 -24.05901 -23.72731 -22.87515 -22.13304 -21.56270 -20.78340 -20.50414 -18.82247 -18.55003 -18.47291 -18.32125 -18.14784 -17.68852 -17.15137 -16.43671 -16.37983 -16.22331 -15.92600 -15.68403 -15.43330 -14.90584 -14.86173 -14.72583 -14.49874 -14.34709 -14.11969 -13.84423 -13.71732 -13.51953 -13.41978 -13.21789 -12.80350 -12.72842 -12.55254 -12.48802 -12.36780 -12.08613 -11.92701 -11.74247 -11.71544 -11.10045 -10.86855 -10.56175 -10.52655 -10.34653 -10.11463 -9.14994 -8.62430 -4.88019 0.15097 0.62961 0.65311 1.28900 1.33090 1.43601 1.48001 1.59939 1.63936 1.93231 2.21971 2.48995 2.95470 3.14393 3.32084 3.52442 3.53471 3.61211 3.66705 3.75727 3.79697 3.85673 3.89369 4.02180 4.02704 4.15588 4.24018 4.28601 4.30473 4.41672 4.48246 4.58022 4.60107 4.67279 4.71670 4.74116 4.77919 4.79986 4.90680 4.90941 4.97035 5.13923 5.15080 5.19620 5.49928 5.52139 5.66962 5.73973 5.76209 6.18369 6.25287 6.50514 6.67617 7.16697 7.36625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.052 4.052 3 Si 0.761 3.239 4 C -0.181 4.181 5 C 0.073 3.927 6 N -0.466 5.466 7 C 0.086 3.914 8 C 0.495 3.505 9 O -0.566 6.566 10 N -0.699 5.699 11 C 0.128 3.872 12 H 0.099 0.901 13 C -0.119 4.119 14 C -0.041 4.041 15 H 0.100 0.900 16 C 0.020 3.980 17 N -0.407 5.407 18 O 0.077 5.923 19 C -0.048 4.048 20 C -0.239 4.239 21 C -0.129 4.129 22 C 0.091 3.909 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.088 4.088 27 C -0.119 4.119 28 H 0.389 0.611 29 H 0.073 0.927 30 H -0.284 1.284 31 H -0.277 1.277 32 H 0.193 0.807 33 H 0.159 0.841 34 H 0.145 0.855 35 H 0.421 0.579 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.256 0.744 39 H 0.197 0.803 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 0.115 6.817 6.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.161 4.161 3 Si 0.664 3.336 4 C -0.188 4.188 5 C -0.053 4.053 6 N -0.149 5.149 7 C -0.038 4.038 8 C 0.280 3.720 9 O -0.444 6.444 10 N -0.352 5.352 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.157 4.157 14 C -0.061 4.061 15 H 0.118 0.882 16 C -0.138 4.138 17 N -0.114 5.114 18 O 0.014 5.986 19 C -0.129 4.129 20 C -0.260 4.260 21 C -0.168 4.168 22 C -0.014 4.014 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.107 4.107 27 C -0.123 4.123 28 H 0.239 0.761 29 H 0.091 0.909 30 H -0.211 1.211 31 H -0.204 1.204 32 H 0.209 0.791 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.259 0.741 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.271 0.729 39 H 0.214 0.786 40 H 0.128 0.872 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.369 1.293 6.565 6.701 hybrid contribution -1.745 -0.658 -0.381 1.904 sum -1.376 0.636 6.184 6.367 Atomic orbital electron populations 1.86591 1.19153 1.80694 1.50515 1.24348 0.83377 1.11560 0.96797 0.94099 0.90491 0.71397 0.77650 1.19759 1.10044 0.91551 0.97490 1.21912 0.99902 0.95019 0.88462 1.43406 1.52133 1.03810 1.15514 1.21998 0.89077 1.08859 0.83877 1.21364 0.90340 0.76228 0.84032 1.90804 1.75532 1.48118 1.29918 1.45744 1.06219 1.70953 1.12318 1.22287 0.79422 0.96421 0.99625 0.88300 1.23325 0.96240 0.96832 0.99351 1.20712 0.97602 0.99010 0.88730 0.88181 1.23769 0.91870 0.98851 0.99325 1.73883 1.22308 1.21354 0.93823 1.84819 1.40781 1.49923 1.23074 1.26907 0.86763 0.95922 1.03264 1.23047 1.05010 1.05383 0.92544 1.23509 0.95633 0.96993 1.00714 1.18417 1.01532 0.87050 0.94391 1.20259 1.04619 0.88878 1.01502 1.21151 0.98071 0.99053 0.94320 1.20928 1.02320 0.96960 0.97036 1.20447 0.99125 0.91631 0.99450 1.19360 1.04162 0.93681 0.95081 0.76102 0.90925 1.21073 1.20357 0.79073 0.82375 0.83725 0.74068 0.90139 0.87630 0.72853 0.78601 0.87189 0.91144 0.84628 0.83499 0.84434 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.71 12.86 -148.98 -1.92 -5.63 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.03 16 3 Si 0.76 0.10 30.79 68.60 2.11 2.21 16 4 C -0.18 -1.49 5.61 -18.63 -0.10 -1.60 16 5 C 0.07 0.29 9.89 83.00 0.82 1.11 16 6 N -0.47 -1.41 2.27 -519.99 -1.18 -2.59 16 7 C 0.09 -0.59 6.48 85.64 0.56 -0.03 16 8 C 0.49 -1.04 7.90 87.66 0.69 -0.34 16 9 O -0.57 -5.26 16.02 -3.03 -0.05 -5.30 16 10 N -0.70 5.83 5.35 -440.05 -2.36 3.48 16 11 C 0.13 -0.62 4.24 45.52 0.19 -0.43 16 12 H 0.10 0.04 7.46 -2.39 -0.02 0.02 16 13 C -0.12 0.73 7.38 31.12 0.23 0.96 16 14 C -0.04 0.10 4.29 -11.01 -0.05 0.06 16 15 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C 0.02 0.01 6.70 43.58 0.29 0.31 16 17 N -0.41 -2.61 12.07 -49.57 -0.60 -3.21 16 18 O 0.08 0.23 11.20 71.61 0.80 1.04 16 19 C -0.05 0.26 12.30 67.17 0.83 1.09 16 20 C -0.24 1.21 10.28 22.40 0.23 1.44 16 21 C -0.13 0.70 7.27 31.12 0.23 0.93 16 22 C 0.09 0.74 6.80 39.03 0.27 1.00 16 23 C -0.13 -0.67 10.00 22.37 0.22 -0.45 16 24 C -0.11 -0.49 10.01 22.30 0.22 -0.27 16 25 C -0.15 -0.99 9.97 22.03 0.22 -0.77 16 26 C -0.09 -0.86 10.05 22.23 0.22 -0.64 16 27 C -0.12 -1.32 6.35 -20.20 -0.13 -1.45 16 28 H 0.39 -0.73 8.74 -74.06 -0.65 -1.38 16 29 H 0.07 0.24 7.96 -2.39 -0.02 0.22 16 30 H -0.28 -1.13 7.11 99.48 0.71 -0.43 16 31 H -0.28 -1.04 7.04 99.48 0.70 -0.34 16 32 H 0.19 -0.41 6.30 -2.91 -0.02 -0.43 16 33 H 0.16 -2.24 8.12 -2.39 -0.02 -2.26 16 34 H 0.15 -1.76 8.14 -2.39 -0.02 -1.78 16 35 H 0.42 -6.56 8.73 -92.71 -0.81 -7.37 16 36 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 37 H 0.11 -0.94 8.07 -2.38 -0.02 -0.96 16 38 H 0.26 -3.82 8.06 -2.91 -0.02 -3.84 16 39 H 0.20 -2.23 7.12 -2.91 -0.02 -2.25 16 40 H 0.11 -1.02 6.62 -2.38 -0.02 -1.03 16 41 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 42 H 0.14 -0.05 8.06 -2.91 -0.02 -0.07 16 43 H 0.15 -0.13 8.06 -2.91 -0.02 -0.16 16 44 H 0.14 0.28 8.06 -2.91 -0.02 0.26 16 45 H 0.12 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -32.25 385.26 1.60 -30.65 By element: Atomic # 1 Polarization: -21.14 SS G_CDS: -0.37 Total: -21.52 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.16 Total: 0.88 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -4.13 Total: -2.33 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Atomic # 14 Polarization: 0.10 SS G_CDS: 2.11 Total: 2.21 kcal Total: -32.25 1.60 -30.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_18339242_9818708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.908 kcal (2) G-P(sol) polarization free energy of solvation -32.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds